Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000588

Physical Location & Seq

Genomic Coordinates Forward (+)

61854527 .. 61856926

Gene Structure 2400 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G033900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAAGTATTTGCTGGTCAACAAGTTCAAGTTTCCGGAGTCTTCCATTGTCATGCTCACAGAAGAAGAAGCTGATCCTTTTCGACGGCCAACCAAACAAAACATGAGAATGGCACTGTTTTGGCTTGTGCAAGGTTGTCAAGCAGGGGATTCTTTGGTGTTTCATTATTCGGGGCATGGATCACAGCAGCGGAACTACACTGGAGACGAGGTGGATGGATATGATGAGACACTGTGTCCCACGGATTATGAGACTCAGGGGATGATCGTGGATGATGAGATCAATGCAACAATTGTTAGACCTCTTCCTGCTGGAGTTAAACTTCATGCTATTGTAGATGCTTGCCATAGTGGTACTGTGCTAGATTTGCCATTTCTCTGTAGAATGGACAGAAATGGGAGGTACATATGGGAGGACCATCGTCCTCGATCAGGTGTTTGGAAGGGAACAAGTGGTGGTGAGGCCATTTCCTTCAGTGGCTGTGACGATGATCAGACCTCTGCTGATACCTCAGCTCTGTCAAAGATTACCTCAACTGGTGCCATGACTTATGCTTTCATCCAAGCCATAGAGCGCGGACATGCAACCACATACGGAAACATGTTGAATGCAATGCGATCCACCATCCGTAACACTGATGGTGGTGCTGGAGGCGGTATTGTGACAACCCTTATCTCCATGCTTTTGACAGGAGGGAGTCTTGGAAGATTGAGACAGGAACCACAGCTAACTGCCGATCAACAATATGATGTGTATACAAAACCTTTCTCCCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0010941 GO:0010942 GO:0016787 GO:0019538 GO:0043067 GO:0043068 GO:0043170 GO:0044238 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C14 zf-LSD1

Protein Analysis

258

Amino Acids

28.43

Weight (kDa)

5.23

Isoelectric Point (pI)

37.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C14	PF00656	9 - 245	1.4e-27	Caspase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000588)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02170
fragaria_vesca	FvH4_7g08970 FvH4_7g08970 FvH4_7g08970 FvH4_7g26490
malus_domestica	MD01G1173500.v1.1 MD02G1221900.v1.1 MD05G1044000.v1.1 MD07G1094600.v1.1 MD07G1240400.v1.1 MD07G1240500.v1.1 MD10G1051100.v1.1 MD10G1051200.v1.1
prunus_persica	Prupe.2G118900_v2.0.a1 Prupe.2G269200_v2.0.a1 Prupe.8G059400_v2.0.a1
pyrus_communis	pycom01g18530 pycom01g18540 pycom02g18780 pycom05g03650 pycom07g07790 pycom07g21680 pycom10g03590
rosa_chinensis	RchiOBHm_Chr1g0344331 RchiOBHm_Chr1g0344461 RchiOBHm_Chr1g0344571 RchiOBHm_Chr1g0344661 RchiOBHm_Chr1g0344751 RchiOBHm_Chr1g0344811 RchiOBHm_Chr1g0344881 RchiOBHm_Chr1g0344901 RchiOBHm_Chr1g0344911 RchiOBHm_Chr1g0373091
rosa_laevigata	RLG00000028867 RLG00000028877 RLG00000028880 RLG00000028885 RLG00000028898
rosa_multiflora	Rmu_co8105290.1_g000001 Rmu_co8220756.1_g000001 Rmu_co8317965.1_g000001 Rmu_co8413861.1_g000001 Rmu_co8518347.1_g000001 Rmu_sc0000390.1_g000001 Rmu_sc0005177.1_g000002 Rmu_sc0007317.1_g000002 Rmu_sc0010876.1_g000003 Rmu_sc0013714.1_g000001 Rmu_sc0029558.1_g000002 Rmu_ssc0000167.1_g000004
rosa_roxburghii	Rroxscaffold_4G00284470 Rroxscaffold_4G00309530 Rroxscaffold_4G00309580 Rroxscaffold_4G00309590 Rroxscaffold_4G00309620 Rroxscaffold_4G00309630 Rroxscaffold_4G00309720 Rroxscaffold_4G00309880
rosa_rugosa	Rorug01G0173200 Rorug01G0173200 Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug01G0174900 Rorug01G0376100
rosa_samantha	Rh1CG175000 Rh1CG176200 Rh1CG177200 Rh1CG177800 Rh1CG177900 Rh1CG178000 Rh1CG361900 Rh1DG188500 Rh1DG188700 Rh1DG189400 Rh1DG379400
rosa_wichuraiana	Rw1G015680 Rw1G015800 Rw1G015810 Rw1G015870 Rw1G033900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	539
AccI	GTMKAC	1 cut(s)	755
AccII	CGCG	1 cut(s)	576
AccIII	TCCGGA	1 cut(s)	34
AciI	CCGC	3 cut(s)	190, 576, 654
AclWI	GGATC	3 cut(s)	68, 187, 612
AcoI	YGGCCR	1 cut(s)	86
AcuI	CTGAAG	1 cut(s)	457
AfaI	GTAC	2 cut(s)	355, 404
AfiI	CCNNNNNNNGG	1 cut(s)	431
AflIII	ACRYGT	1 cut(s)	600
AgsI	TTSAA	2 cut(s)	28, 607
AhdI	GACNNNNNGTC	1 cut(s)	234
AluBI	AGCT	3 cut(s)	71, 515, 727
AluI	AGCT	3 cut(s)	71, 515, 727
Alw26I	GTCTC	4 cut(s)	198, 221, 245, 706
AlwI	GGATC	3 cut(s)	68, 187, 612
AlwNI	CAGNNNCTG	1 cut(s)	480
Aor13HI	TCCGGA	1 cut(s)	34
AoxI	GGCC	2 cut(s)	86, 462
ApeKI	GCWGC	1 cut(s)	187
AspLEI	GCGC	1 cut(s)	576
AspS9I	GGNCC	1 cut(s)	415
AsuHPI	GGTGA	1 cut(s)	470
AvaII	GGWCC	1 cut(s)	415
BanI	GGYRCC	1 cut(s)	539
BbsI	GAAGAC	1 cut(s)	33
BbvCI	CCTCAGC	1 cut(s)	511
BbvI	GCAGC	1 cut(s)	199
BccI	CCATC	4 cut(s)	209, 426, 632, 632
BceAI	ACGGC	1 cut(s)	101
BclI	TGATCA	1 cut(s)	490
BcoDI	GTCTC	4 cut(s)	198, 221, 245, 706
BfaI	CTAG	1 cut(s)	362
BfmI	CTRYAG	2 cut(s)	379, 773
BisI	GCNGC	1 cut(s)	188
BlsI	GCNGC	1 cut(s)	189
Bme18I	GGWCC	1 cut(s)	415
BmeRI	GACNNNNNGTC	1 cut(s)	234
BmgT120I	GGNCC	1 cut(s)	415
BmiI	GGNNCC	2 cut(s)	541, 720
BmsI	GCATC	1 cut(s)	328
BoxI	GACNNNNGTC	1 cut(s)	420
BpiI	GAAGAC	1 cut(s)	33
BpmI	CTGGAG	3 cut(s)	222, 333, 669
Bpu10I	CCTNAGC	1 cut(s)	511
BsaJI	CCNNGG	1 cut(s)	240
BsaWI	WCCGGW	1 cut(s)	34
BsaXI	ACNNNNNCTCC	2 cut(s)	195, 225
Bsc4I	CCNNNNNNNGG	1 cut(s)	431
Bse1I	ACTGG	2 cut(s)	205, 541
Bse3DI	GCAATG	1 cut(s)	618
BseAI	TCCGGA	1 cut(s)	34
BseDI	CCNNGG	1 cut(s)	240
BseGI	GGATG	5 cut(s)	220, 267, 277, 558, 624
BseLI	CCNNNNNNNGG	1 cut(s)	431
BseMI	GCAATG	1 cut(s)	618
BseMII	CTCAG	2 cut(s)	269, 525
BseNI	ACTGG	2 cut(s)	205, 541
BseXI	GCAGC	1 cut(s)	199
Bsh1236I	CGCG	1 cut(s)	576
BshFI	GGCC	2 cut(s)	88, 464
BshNI	GGYRCC	1 cut(s)	539
BsiSI	CCGG	1 cut(s)	35
BslFI	GGGAC	1 cut(s)	222
BslI	CCNNNNNNNGG	1 cut(s)	431
BsmAI	GTCTC	4 cut(s)	198, 221, 245, 706
BsmBI	CGTCTC	1 cut(s)	198
BsmFI	GGGAC	1 cut(s)	222
BsmI	GAATGC	1 cut(s)	613
BsnI	GGCC	2 cut(s)	88, 464
Bsp13I	TCCGGA	1 cut(s)	34
Bsp143I	GATC	8 cut(s)	73, 179, 264, 279, 428, 490, 617, 736
BspACI	CCGC	3 cut(s)	190, 576, 654
BspANI	GGCC	2 cut(s)	88, 464
BspCNI	CTCAG	2 cut(s)	268, 524
BspEI	TCCGGA	1 cut(s)	34
BspFNI	CGCG	1 cut(s)	576
BspLI	GGNNCC	2 cut(s)	541, 720
BspPI	GGATC	3 cut(s)	68, 187, 612
BspT107I	GGYRCC	1 cut(s)	539
BsrDI	GCAATG	1 cut(s)	618
BsrI	ACTGG	2 cut(s)	205, 541
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	8 cut(s)	73, 179, 264, 279, 428, 490, 617, 736
BssNAI	GTATAC	1 cut(s)	756
Bst1107I	GTATAC	1 cut(s)	756
Bst4CI	ACNGT	3 cut(s)	117, 234, 358
Bst6I	CTCTTC	1 cut(s)	309
BstC8I	GCNNGC	1 cut(s)	343
BstDEI	CTNAG	2 cut(s)	255, 511
BstDSI	CCRYGG	1 cut(s)	240
BstENI	CCTNNNNNAGG	1 cut(s)	429
BstF5I	GGATG	5 cut(s)	220, 267, 277, 558, 624
BstFNI	CGCG	1 cut(s)	576
BstHHI	GCGC	1 cut(s)	576
BstKTI	GATC	8 cut(s)	76, 182, 267, 282, 431, 493, 620, 739
BstMAI	GTCTC	4 cut(s)	198, 221, 245, 706
BstMBI	GATC	8 cut(s)	73, 179, 264, 279, 428, 490, 617, 736
BstMWI	GCNNNNNNNGC	1 cut(s)	367
BstNSI	RCATGY	2 cut(s)	584, 604
BstPAI	GACNNNNGTC	1 cut(s)	420
BstSFI	CTRYAG	2 cut(s)	379, 773
BstUI	CGCG	1 cut(s)	576
BstV1I	GCAGC	1 cut(s)	199
BstV2I	GAAGAC	1 cut(s)	33
BstZ17I	GTATAC	1 cut(s)	756
BsuRI	GGCC	2 cut(s)	88, 464
BtgI	CCRYGG	1 cut(s)	240
BtsCI	GGATG	5 cut(s)	220, 267, 277, 558, 624
BtsIMutI	CAGTG	5 cut(s)	113, 198, 230, 481, 633
Cac8I	GCNNGC	1 cut(s)	343
CaiI	CAGNNNCTG	1 cut(s)	480
CfoI	GCGC	1 cut(s)	576
Cfr13I	GGNCC	1 cut(s)	415
Csp6I	GTAC	2 cut(s)	354, 403
CviAII	CATG	8 cut(s)	52, 103, 176, 326, 544, 581, 601, 679
CviJI	RGCY	8 cut(s)	71, 88, 124, 464, 480, 515, 566, 727
CviKI_1	RGCY	8 cut(s)	71, 88, 124, 464, 480, 515, 566, 727
CviQI	GTAC	2 cut(s)	354, 403
DdeI	CTNAG	2 cut(s)	255, 511
DpnI	GATC	8 cut(s)	75, 181, 266, 281, 430, 492, 619, 738
DpnII	GATC	8 cut(s)	73, 179, 264, 279, 428, 490, 617, 736
DriI	GACNNNNNGTC	1 cut(s)	234
EaeI	YGGCCR	1 cut(s)	86
Eam1104I	CTCTTC	1 cut(s)	309
Eam1105I	GACNNNNNGTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	415
Eco57I	CTGAAG	1 cut(s)	457
EcoNI	CCTNNNNNAGG	1 cut(s)	429
Esp3I	CGTCTC	1 cut(s)	198
FaeI	CATG	8 cut(s)	55, 106, 179, 329, 547, 584, 604, 682
FaqI	GGGAC	1 cut(s)	222
FatI	CATG	8 cut(s)	51, 102, 175, 325, 543, 580, 600, 678
FauNDI	CATATG	1 cut(s)	407
FbaI	TGATCA	1 cut(s)	490
FblI	GTMKAC	1 cut(s)	755
Fnu4HI	GCNGC	1 cut(s)	188
FokI	GGATG	5 cut(s)	227, 274, 284, 545, 611
Fsp4HI	GCNGC	1 cut(s)	188
FspBI	CTAG	1 cut(s)	362
GlaI	GCGC	1 cut(s)	575
GluI	GCNGC	1 cut(s)	188
GsuI	CTGGAG	3 cut(s)	222, 333, 669
HaeIII	GGCC	2 cut(s)	88, 464
HapII	CCGG	1 cut(s)	35
HhaI	GCGC	1 cut(s)	576
Hin1II	CATG	8 cut(s)	55, 106, 179, 329, 547, 584, 604, 682
Hin6I	GCGC	1 cut(s)	574
HinP1I	GCGC	1 cut(s)	574
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HinfI	GANTC	4 cut(s)	38, 149, 253, 697
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	1 cut(s)	470
Hpy166II	GTNNAC	2 cut(s)	19, 756
Hpy188I	TCNGA	1 cut(s)	495
Hpy188III	TCNNGA	1 cut(s)	35
Hpy8I	GTNNAC	2 cut(s)	19, 756
Hpy99I	CGWCG	1 cut(s)	87
HpyAV	CCTTC	2 cut(s)	436, 481
HpyCH4III	ACNGT	3 cut(s)	117, 234, 358
HpyCH4V	TGCA	4 cut(s)	130, 287, 584, 611
HpyF10VI	GCNNNNNNNGC	1 cut(s)	367
HpyF3I	CTNAG	2 cut(s)	255, 511
Hsp92II	CATG	8 cut(s)	55, 106, 179, 329, 547, 584, 604, 682
HspAI	GCGC	1 cut(s)	574
Kpn2I	TCCGGA	1 cut(s)	34
Ksp22I	TGATCA	1 cut(s)	490
Kzo9I	GATC	8 cut(s)	73, 179, 264, 279, 428, 490, 617, 736
Lsp1109I	GCAGC	1 cut(s)	199
LweI	GCATC	1 cut(s)	328
MaeI	CTAG	1 cut(s)	362
MaeIII	GTNAC	3 cut(s)	482, 629, 661
MalI	GATC	8 cut(s)	75, 181, 266, 281, 430, 492, 619, 738
MboI	GATC	8 cut(s)	73, 179, 264, 279, 428, 490, 617, 736
MboII	GAAGA	5 cut(s)	33, 74, 77, 296, 717
MfeI	CAATTG	1 cut(s)	291
MluCI	AATT	1 cut(s)	291
MlyI	GAGTC	3 cut(s)	47, 247, 706
MroI	TCCGGA	1 cut(s)	34
MseI	TTAA	1 cut(s)	318
MslI	CAYNNNNRTG	2 cut(s)	50, 107
MspA1I	CMGCKG	1 cut(s)	190
MspI	CCGG	1 cut(s)	35
MunI	CAATTG	1 cut(s)	291
Mva1269I	GAATGC	1 cut(s)	613
MvnI	CGCG	1 cut(s)	576
MwoI	GCNNNNNNNGC	1 cut(s)	367
NdeI	CATATG	1 cut(s)	407
NdeII	GATC	8 cut(s)	73, 179, 264, 279, 428, 490, 617, 736
NlaIII	CATG	8 cut(s)	55, 106, 179, 329, 547, 584, 604, 682
NlaIV	GGNNCC	2 cut(s)	541, 720
NmuCI	GTSAC	2 cut(s)	482, 661
NspI	RCATGY	2 cut(s)	584, 604
PciI	ACATGT	1 cut(s)	600
PctI	GAATGC	1 cut(s)	613
PfeI	GAWTC	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	189
PleI	GAGTC	3 cut(s)	46, 247, 705
PpsI	GAGTC	3 cut(s)	46, 247, 705
PscI	ACATGT	1 cut(s)	600
PshAI	GACNNNNGTC	1 cut(s)	420
PspN4I	GGNNCC	2 cut(s)	541, 720
PspPI	GGNCC	1 cut(s)	415
PstNI	CAGNNNCTG	1 cut(s)	480
RsaI	GTAC	2 cut(s)	355, 404
RsaNI	GTAC	2 cut(s)	354, 403
RseI	CAYNNNNRTG	2 cut(s)	50, 107
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	1 cut(s)	188
Sau3AI	GATC	8 cut(s)	73, 179, 264, 279, 428, 490, 617, 736
Sau96I	GGNCC	1 cut(s)	415
SchI	GAGTC	3 cut(s)	47, 247, 706
SfaNI	GCATC	1 cut(s)	328
SfcI	CTRYAG	2 cut(s)	379, 773
SinI	GGWCC	1 cut(s)	415
SmiMI	CAYNNNNRTG	2 cut(s)	50, 107
Sse9I	AATT	1 cut(s)	291
SsiI	CCGC	3 cut(s)	190, 576, 654
SspMI	CTAG	1 cut(s)	362
TaaI	ACNGT	3 cut(s)	117, 234, 358
TaqI	TCGA	2 cut(s)	82, 427
TasI	AATT	1 cut(s)	291
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	5 cut(s)	120, 205, 237, 481, 640
TseFI	GTSAC	2 cut(s)	482, 661
TseI	GCWGC	1 cut(s)	187
Tsp45I	GTSAC	2 cut(s)	482, 661
TspDTI	ATGAA	4 cut(s)	17, 152, 314, 547
TspGWI	ACGGA	3 cut(s)	257, 609, 617
TspRI	CASTG	5 cut(s)	120, 205, 237, 481, 640
VpaK11BI	GGWCC	1 cut(s)	415
XagI	CCTNNNNNAGG	1 cut(s)	429
XceI	RCATGY	2 cut(s)	584, 604
XmiI	GTMKAC	1 cut(s)	755
XspI	CTAG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.