Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8220756.1

Orthogroup ID

OG0000588

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 311

Gene Structure 311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8220756.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

atggcattacattggtttgtacagggatgccaaccaggtgactcccttgtgtttcactactctggtcatagttcacggcagagggattatcatggtgatgaagttgacggatatgatgaaaccctttgtccccttgacttcgaaacccagggtatgattgtcgatgatgaaataaatgcaataattgttaggcccattccacatgggctcaagcttcatgcaattatagattcttgtcatagtggcaccatactggatttgaagaatggacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0010941 GO:0010942 GO:0016787 GO:0019538 GO:0043067 GO:0043068 GO:0043170 GO:0044238 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MORN Peptidase_C14 zf-LSD1

Protein Analysis

91

Amino Acids

10.18

Weight (kDa)

4.86

Isoelectric Point (pI)

31.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000588)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02170
fragaria_vesca	FvH4_7g08970 FvH4_7g08970 FvH4_7g08970 FvH4_7g26490
malus_domestica	MD01G1173500.v1.1 MD02G1221900.v1.1 MD05G1044000.v1.1 MD07G1094600.v1.1 MD07G1240400.v1.1 MD07G1240500.v1.1 MD10G1051100.v1.1 MD10G1051200.v1.1
prunus_persica	Prupe.2G118900_v2.0.a1 Prupe.2G269200_v2.0.a1 Prupe.8G059400_v2.0.a1
pyrus_communis	pycom01g18530 pycom01g18540 pycom02g18780 pycom05g03650 pycom07g07790 pycom07g21680 pycom10g03590
rosa_chinensis	RchiOBHm_Chr1g0344331 RchiOBHm_Chr1g0344461 RchiOBHm_Chr1g0344571 RchiOBHm_Chr1g0344661 RchiOBHm_Chr1g0344751 RchiOBHm_Chr1g0344811 RchiOBHm_Chr1g0344881 RchiOBHm_Chr1g0344901 RchiOBHm_Chr1g0344911 RchiOBHm_Chr1g0373091
rosa_laevigata	RLG00000028867 RLG00000028877 RLG00000028880 RLG00000028885 RLG00000028898
rosa_multiflora	Rmu_co8105290.1_g000001 Rmu_co8220756.1_g000001 Rmu_co8317965.1_g000001 Rmu_co8413861.1_g000001 Rmu_co8518347.1_g000001 Rmu_sc0000390.1_g000001 Rmu_sc0005177.1_g000002 Rmu_sc0007317.1_g000002 Rmu_sc0010876.1_g000003 Rmu_sc0013714.1_g000001 Rmu_sc0029558.1_g000002 Rmu_ssc0000167.1_g000004
rosa_roxburghii	Rroxscaffold_4G00284470 Rroxscaffold_4G00309530 Rroxscaffold_4G00309580 Rroxscaffold_4G00309590 Rroxscaffold_4G00309620 Rroxscaffold_4G00309630 Rroxscaffold_4G00309720 Rroxscaffold_4G00309880
rosa_rugosa	Rorug01G0173200 Rorug01G0173200 Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug01G0174900 Rorug01G0376100
rosa_samantha	Rh1CG175000 Rh1CG176200 Rh1CG177200 Rh1CG177800 Rh1CG177900 Rh1CG178000 Rh1CG361900 Rh1DG188500 Rh1DG188700 Rh1DG189400 Rh1DG379400
rosa_wichuraiana	Rw1G015680 Rw1G015800 Rw1G015810 Rw1G015870 Rw1G033900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	245
AfaI	GTAC	1 cut(s)	21
AgsI	TTSAA	1 cut(s)	262
AjnI	CCWGG	2 cut(s)	34, 147
AluBI	AGCT	1 cut(s)	214
AluI	AGCT	1 cut(s)	214
AoxI	GGCC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	192
AsuHPI	GGTGA	2 cut(s)	50, 107
AsuII	TTCGAA	1 cut(s)	141
BanI	GGYRCC	1 cut(s)	245
BanII	GRGCYC	1 cut(s)	210
BceAI	ACGGC	1 cut(s)	92
BciT130I	CCWGG	2 cut(s)	36, 149
Bme1390I	CCNGG	2 cut(s)	36, 149
BmgT120I	GGNCC	1 cut(s)	192
BmiI	GGNNCC	1 cut(s)	247
BmrFI	CCNGG	2 cut(s)	36, 149
BmsI	GCATC	1 cut(s)	17
Bpu14I	TTCGAA	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	194
BsaJI	CCNNGG	2 cut(s)	147, 148
Bse1I	ACTGG	1 cut(s)	258
BseBI	CCWGG	2 cut(s)	36, 149
BseDI	CCNNGG	2 cut(s)	147, 148
BseGI	GGATG	1 cut(s)	32
BseNI	ACTGG	1 cut(s)	258
BshFI	GGCC	1 cut(s)	193
BshNI	GGYRCC	1 cut(s)	245
BslFI	GGGAC	1 cut(s)	114
BsmFI	GGGAC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	193
Bsp119I	TTCGAA	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp1407I	TGTACA	1 cut(s)	19
BspANI	GGCC	1 cut(s)	193
BspLI	GGNNCC	1 cut(s)	247
BspT104I	TTCGAA	1 cut(s)	141
BspT107I	GGYRCC	1 cut(s)	245
BsrGI	TGTACA	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	258
BssECI	CCNNGG	2 cut(s)	147, 148
Bst2UI	CCWGG	2 cut(s)	36, 149
BstAUI	TGTACA	1 cut(s)	19
BstBI	TTCGAA	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	32
BstNI	CCWGG	2 cut(s)	36, 149
BstSCI	CCNGG	2 cut(s)	34, 147
BsuRI	GGCC	1 cut(s)	193
BtsCI	GGATG	1 cut(s)	32
Cfr13I	GGNCC	1 cut(s)	192
CsiI	ACCWGGT	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	20
CviAII	CATG	3 cut(s)	92, 203, 218
CviJI	RGCY	3 cut(s)	193, 208, 214
CviKI_1	RGCY	3 cut(s)	193, 208, 214
CviQI	GTAC	1 cut(s)	20
Eco24I	GRGCYC	1 cut(s)	210
EcoRII	CCWGG	2 cut(s)	34, 147
EcoT38I	GRGCYC	1 cut(s)	210
FaeI	CATG	3 cut(s)	95, 206, 221
FaiI	YATR	9 cut(s)	69, 93, 114, 155, 204, 219, 227, 240, 251
FaqI	GGGAC	1 cut(s)	114
FatI	CATG	3 cut(s)	91, 202, 217
FokI	GGATG	1 cut(s)	39
FriOI	GRGCYC	1 cut(s)	210
HaeIII	GGCC	1 cut(s)	193
Hin1II	CATG	3 cut(s)	95, 206, 221
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HindIII	AAGCTT	1 cut(s)	212
HinfI	GANTC	2 cut(s)	41, 230
HphI	GGTGA	2 cut(s)	50, 107
Hpy166II	GTNNAC	2 cut(s)	74, 106
Hpy8I	GTNNAC	2 cut(s)	74, 106
HpyCH4V	TGCA	2 cut(s)	179, 221
Hsp92II	CATG	3 cut(s)	95, 206, 221
LpnPI	CCDG	7 cut(s)	8, 21, 48, 48, 134, 161, 239
LweI	GCATC	1 cut(s)	17
MabI	ACCWGGT	1 cut(s)	34
MaeIII	GTNAC	1 cut(s)	38
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	2 cut(s)	183, 222
MlyI	GAGTC	1 cut(s)	35
MnlI	CCTC	1 cut(s)	75
MslI	CAYNNNNRTG	1 cut(s)	96
MspR9I	CCNGG	2 cut(s)	36, 149
MvaI	CCWGG	2 cut(s)	36, 149
NlaIII	CATG	3 cut(s)	95, 206, 221
NlaIV	GGNNCC	1 cut(s)	247
NmuCI	GTSAC	1 cut(s)	38
NspV	TTCGAA	1 cut(s)	141
PasI	CCCWGGG	1 cut(s)	148
PfeI	GAWTC	1 cut(s)	230
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
Psp6I	CCWGG	2 cut(s)	34, 147
PspGI	CCWGG	2 cut(s)	34, 147
PspN4I	GGNNCC	1 cut(s)	247
PspPI	GGNCC	1 cut(s)	192
RsaI	GTAC	1 cut(s)	21
RsaNI	GTAC	1 cut(s)	20
RseI	CAYNNNNRTG	1 cut(s)	96
Sau96I	GGNCC	1 cut(s)	192
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	2 cut(s)	36, 149
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	2 cut(s)	40, 216
SexAI	ACCWGGT	1 cut(s)	34
SfaNI	GCATC	1 cut(s)	17
SfuI	TTCGAA	1 cut(s)	141
SmiMI	CAYNNNNRTG	1 cut(s)	96
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	2 cut(s)	183, 222
StyD4I	CCNGG	2 cut(s)	34, 147
TaqI	TCGA	2 cut(s)	141, 162
TasI	AATT	2 cut(s)	183, 222
TatI	WGTACW	1 cut(s)	19
TfiI	GAWTC	1 cut(s)	230
TseFI	GTSAC	1 cut(s)	38
Tsp45I	GTSAC	1 cut(s)	38
TspDTI	ATGAA	4 cut(s)	114, 132, 183, 206
TspGWI	ACGGA	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.