Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000588

Physical Location & Seq

Genomic Coordinates Forward (+)

31371324 .. 31374324

Gene Structure 3001 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00309580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGATGAAACCCTTTGTCCCCTTGACGTCTTAACCAAGGGTGATAAGGGTATGATTGTTGATGATTGGTTAAATGCAACAATTGTTAGGCCCATTCCACCTGGGGTCAAGCTTCATGCAATTATAGATTCTTGTCATAGTGGCACCATACTGGATTTGCCATGGCTTTGCAATATGGAATGGGATGGAAACTATGAATGGGACGATCATAGGCCTAAATCAGGCGCATACAAAGGAACAAGTGGTGGAGAAGTTATATGTATCAGTGGTTGTCATGACCATCAAAACTCTGAGGAAACACCATCAATCCCATCAACAGGTGTCATGACTTCCTGCTTCATCCAAGCAATCAAGAGTGGACAGGCAGCCACATATGGGAGATTACTCTATTATATGCGTAATAACATTCGTAGGGGTTCTGGTGGTGGTGGTGCTGTTACATCTCTTGACCGCATGCTTGTTGGTGGGCCGGGACAGGAGCCTCAATTAACTGCCGGCAAGCGGTTCGATGTGTACACGAAACCTTTTACCCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0010941 GO:0010942 GO:0016787 GO:0019538 GO:0043067 GO:0043068 GO:0043170 GO:0044238 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MORN Peptidase_C14 zf-LSD1

Protein Analysis

178

Amino Acids

19.36

Weight (kDa)

5.67

Isoelectric Point (pI)

35.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C14	PF00656	2 - 163	8.3e-10	Caspase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000588)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02170
fragaria_vesca	FvH4_7g08970 FvH4_7g08970 FvH4_7g08970 FvH4_7g26490
malus_domestica	MD01G1173500.v1.1 MD02G1221900.v1.1 MD05G1044000.v1.1 MD07G1094600.v1.1 MD07G1240400.v1.1 MD07G1240500.v1.1 MD10G1051100.v1.1 MD10G1051200.v1.1
prunus_persica	Prupe.2G118900_v2.0.a1 Prupe.2G269200_v2.0.a1 Prupe.8G059400_v2.0.a1
pyrus_communis	pycom01g18530 pycom01g18540 pycom02g18780 pycom05g03650 pycom07g07790 pycom07g21680 pycom10g03590
rosa_chinensis	RchiOBHm_Chr1g0344331 RchiOBHm_Chr1g0344461 RchiOBHm_Chr1g0344571 RchiOBHm_Chr1g0344661 RchiOBHm_Chr1g0344751 RchiOBHm_Chr1g0344811 RchiOBHm_Chr1g0344881 RchiOBHm_Chr1g0344901 RchiOBHm_Chr1g0344911 RchiOBHm_Chr1g0373091
rosa_laevigata	RLG00000028867 RLG00000028877 RLG00000028880 RLG00000028885 RLG00000028898
rosa_multiflora	Rmu_co8105290.1_g000001 Rmu_co8220756.1_g000001 Rmu_co8317965.1_g000001 Rmu_co8413861.1_g000001 Rmu_co8518347.1_g000001 Rmu_sc0000390.1_g000001 Rmu_sc0005177.1_g000002 Rmu_sc0007317.1_g000002 Rmu_sc0010876.1_g000003 Rmu_sc0013714.1_g000001 Rmu_sc0029558.1_g000002 Rmu_ssc0000167.1_g000004
rosa_roxburghii	Rroxscaffold_4G00284470 Rroxscaffold_4G00309530 Rroxscaffold_4G00309580 Rroxscaffold_4G00309590 Rroxscaffold_4G00309620 Rroxscaffold_4G00309630 Rroxscaffold_4G00309720 Rroxscaffold_4G00309880
rosa_rugosa	Rorug01G0173200 Rorug01G0173200 Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug01G0174900 Rorug01G0376100
rosa_samantha	Rh1CG175000 Rh1CG176200 Rh1CG177200 Rh1CG177800 Rh1CG177900 Rh1CG178000 Rh1CG361900 Rh1DG188500 Rh1DG188700 Rh1DG189400 Rh1DG379400
rosa_wichuraiana	Rw1G015680 Rw1G015800 Rw1G015810 Rw1G015870 Rw1G033900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	30
AccB1I	GGYRCC	1 cut(s)	143
AciI	CCGC	2 cut(s)	451, 502
AcyI	GRCGYC	1 cut(s)	27
AfaI	GTAC	1 cut(s)	515
AfiI	CCNNNNNNNGG	4 cut(s)	221, 317, 375, 501
AjnI	CCWGG	1 cut(s)	100
AluBI	AGCT	1 cut(s)	112
AluI	AGCT	1 cut(s)	112
AoxI	GGCC	3 cut(s)	89, 212, 467
ApeKI	GCWGC	1 cut(s)	365
AspLEI	GCGC	1 cut(s)	227
AspS9I	GGNCC	2 cut(s)	90, 467
AsuC2I	CCSGG	1 cut(s)	471
AsuHPI	GGTGA	1 cut(s)	53
BanI	GGYRCC	1 cut(s)	143
BbvI	GCAGC	1 cut(s)	377
BccI	CCATC	4 cut(s)	179, 288, 310, 319
BcgI	CGANNNNNNTGC	2 cut(s)	487, 521
BciT130I	CCWGG	1 cut(s)	102
BcnI	CCSGG	1 cut(s)	471
BisI	GCNGC	1 cut(s)	366
BlsI	GCNGC	1 cut(s)	367
Bme1390I	CCNGG	2 cut(s)	102, 471
BmgT120I	GGNCC	2 cut(s)	90, 467
BmiI	GGNNCC	2 cut(s)	145, 480
BmrFI	CCNGG	2 cut(s)	102, 471
BpuMI	CCSGG	1 cut(s)	471
BsaHI	GRCGYC	1 cut(s)	27
BsaJI	CCNNGG	3 cut(s)	36, 101, 161
Bsc4I	CCNNNNNNNGG	4 cut(s)	221, 317, 375, 501
Bse118I	RCCGGY	1 cut(s)	494
Bse1I	ACTGG	1 cut(s)	156
BseBI	CCWGG	1 cut(s)	102
BseDI	CCNNGG	3 cut(s)	36, 101, 161
BseGI	GGATG	3 cut(s)	10, 190, 339
BseLI	CCNNNNNNNGG	4 cut(s)	221, 317, 375, 501
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	1 cut(s)	156
BseXI	GCAGC	1 cut(s)	377
BshFI	GGCC	3 cut(s)	91, 214, 469
BshNI	GGYRCC	1 cut(s)	143
BsiSI	CCGG	2 cut(s)	470, 495
BslFI	GGGAC	3 cut(s)	3, 215, 486
BslI	CCNNNNNNNGG	4 cut(s)	221, 317, 375, 501
BsmFI	GGGAC	3 cut(s)	3, 215, 486
BsnI	GGCC	3 cut(s)	91, 214, 469
Bsp1407I	TGTACA	1 cut(s)	513
Bsp143I	GATC	1 cut(s)	205
Bsp19I	CCATGG	1 cut(s)	161
BspACI	CCGC	2 cut(s)	451, 502
BspANI	GGCC	3 cut(s)	91, 214, 469
BspCNI	CTCAG	1 cut(s)	283
BspHI	TCATGA	2 cut(s)	274, 324
BspLI	GGNNCC	2 cut(s)	145, 480
BspT107I	GGYRCC	1 cut(s)	143
BsrFI	RCCGGY	1 cut(s)	494
BsrGI	TGTACA	1 cut(s)	513
BsrI	ACTGG	1 cut(s)	156
BssAI	RCCGGY	1 cut(s)	494
BssECI	CCNNGG	3 cut(s)	36, 101, 161
BssMI	GATC	1 cut(s)	205
BssNI	GRCGYC	1 cut(s)	27
BssT1I	CCWWGG	2 cut(s)	36, 161
Bst2UI	CCWGG	1 cut(s)	102
BstACI	GRCGYC	1 cut(s)	27
BstAUI	TGTACA	1 cut(s)	513
BstC8I	GCNNGC	3 cut(s)	455, 496, 500
BstDEI	CTNAG	1 cut(s)	291
BstDSI	CCRYGG	1 cut(s)	161
BstENI	CCTNNNNNAGG	1 cut(s)	219
BstF5I	GGATG	3 cut(s)	10, 190, 339
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	1 cut(s)	208
BstMBI	GATC	1 cut(s)	205
BstNI	CCWGG	1 cut(s)	102
BstNSI	RCATGY	1 cut(s)	457
BstSCI	CCNGG	2 cut(s)	100, 469
BstV1I	GCAGC	1 cut(s)	377
BsuRI	GGCC	3 cut(s)	91, 214, 469
BtgI	CCRYGG	1 cut(s)	161
BtsCI	GGATG	3 cut(s)	10, 190, 339
BtsIMutI	CAGTG	1 cut(s)	271
Cac8I	GCNNGC	3 cut(s)	455, 496, 500
CciI	TCATGA	2 cut(s)	274, 324
CfoI	GCGC	1 cut(s)	227
Cfr10I	RCCGGY	1 cut(s)	494
Cfr13I	GGNCC	2 cut(s)	90, 467
Csp6I	GTAC	1 cut(s)	514
CviAII	CATG	5 cut(s)	116, 162, 275, 325, 454
CviJI	RGCY	7 cut(s)	91, 112, 166, 214, 368, 469, 481
CviKI_1	RGCY	7 cut(s)	91, 112, 166, 214, 368, 469, 481
CviQI	GTAC	1 cut(s)	514
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
Eco130I	CCWWGG	2 cut(s)	36, 161
Eco147I	AGGCCT	1 cut(s)	214
EcoNI	CCTNNNNNAGG	1 cut(s)	219
EcoRII	CCWGG	1 cut(s)	100
EcoT14I	CCWWGG	2 cut(s)	36, 161
ErhI	CCWWGG	2 cut(s)	36, 161
FaeI	CATG	5 cut(s)	119, 165, 278, 328, 457
FaqI	GGGAC	3 cut(s)	3, 215, 486
FatI	CATG	5 cut(s)	115, 161, 274, 324, 453
FauNDI	CATATG	1 cut(s)	373
Fnu4HI	GCNGC	1 cut(s)	366
FokI	GGATG	3 cut(s)	17, 197, 326
Fsp4HI	GCNGC	1 cut(s)	366
GlaI	GCGC	1 cut(s)	226
GluI	GCNGC	1 cut(s)	366
HaeIII	GGCC	3 cut(s)	91, 214, 469
HapII	CCGG	2 cut(s)	470, 495
HhaI	GCGC	1 cut(s)	227
Hin1I	GRCGYC	1 cut(s)	27
Hin1II	CATG	5 cut(s)	119, 165, 278, 328, 457
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	1 cut(s)	128
HpaII	CCGG	2 cut(s)	470, 495
HphI	GGTGA	1 cut(s)	53
Hpy166II	GTNNAC	3 cut(s)	359, 514, 516
Hpy188I	TCNGA	1 cut(s)	292
Hpy188III	TCNNGA	4 cut(s)	275, 325, 352, 446
Hpy8I	GTNNAC	3 cut(s)	359, 514, 516
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	3 cut(s)	77, 119, 171
HpyF3I	CTNAG	1 cut(s)	291
HpySE526I	ACGT	1 cut(s)	27
Hsp92I	GRCGYC	1 cut(s)	27
Hsp92II	CATG	5 cut(s)	119, 165, 278, 328, 457
HspAI	GCGC	1 cut(s)	225
KroI	GCCGGC	1 cut(s)	494
KroNI	GCCGGC	1 cut(s)	496
Kzo9I	GATC	1 cut(s)	205
LmnI	GCTCC	1 cut(s)	478
Lsp1109I	GCAGC	1 cut(s)	377
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	436
MalI	GATC	1 cut(s)	207
MboI	GATC	1 cut(s)	205
MfeI	CAATTG	1 cut(s)	81
MluCI	AATT	3 cut(s)	81, 120, 485
MnlI	CCTC	2 cut(s)	286, 492
MroNI	GCCGGC	1 cut(s)	494
MseI	TTAA	3 cut(s)	32, 71, 488
MspI	CCGG	2 cut(s)	470, 495
MspR9I	CCNGG	2 cut(s)	102, 471
MunI	CAATTG	1 cut(s)	81
MvaI	CCWGG	1 cut(s)	102
NaeI	GCCGGC	1 cut(s)	496
NciI	CCSGG	1 cut(s)	471
NcoI	CCATGG	1 cut(s)	161
NdeI	CATATG	1 cut(s)	373
NdeII	GATC	1 cut(s)	205
NgoMIV	GCCGGC	1 cut(s)	494
NlaIII	CATG	5 cut(s)	119, 165, 278, 328, 457
NlaIV	GGNNCC	2 cut(s)	145, 480
NspI	RCATGY	1 cut(s)	457
PaeI	GCATGC	1 cut(s)	457
PagI	TCATGA	2 cut(s)	274, 324
PceI	AGGCCT	1 cut(s)	214
PdiI	GCCGGC	1 cut(s)	496
PfeI	GAWTC	1 cut(s)	128
PkrI	GCNGC	1 cut(s)	367
Psp6I	CCWGG	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	100
PspN4I	GGNNCC	2 cut(s)	145, 480
PspPI	GGNCC	2 cut(s)	90, 467
RsaI	GTAC	1 cut(s)	515
RsaNI	GTAC	1 cut(s)	514
SaqAI	TTAA	3 cut(s)	32, 71, 488
SatI	GCNGC	1 cut(s)	366
Sau3AI	GATC	1 cut(s)	205
Sau96I	GGNCC	2 cut(s)	90, 467
ScrFI	CCNGG	2 cut(s)	102, 471
SetI	ASST	5 cut(s)	30, 103, 114, 322, 526
SphI	GCATGC	1 cut(s)	457
Sse9I	AATT	3 cut(s)	81, 120, 485
SseBI	AGGCCT	1 cut(s)	214
SsiI	CCGC	2 cut(s)	451, 502
StuI	AGGCCT	1 cut(s)	214
StyD4I	CCNGG	2 cut(s)	100, 469
StyI	CCWWGG	2 cut(s)	36, 161
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	1 cut(s)	507
TasI	AATT	3 cut(s)	81, 120, 485
TatI	WGTACW	1 cut(s)	513
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	3 cut(s)	32, 71, 488
Tru9I	TTAA	3 cut(s)	32, 71, 488
TscAI	CASTG	1 cut(s)	271
TseI	GCWGC	1 cut(s)	365
TspDTI	ATGAA	4 cut(s)	21, 104, 210, 328
TspRI	CASTG	1 cut(s)	271
XagI	CCTNNNNNAGG	1 cut(s)	219
XceI	RCATGY	1 cut(s)	457
ZraI	GACGTC	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.