Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0000588

Physical Location & Seq

Genomic Coordinates Forward (+)

17497748 .. 17498040

Gene Structure 293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g18540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGATCGATCAAACTTCTGCTGATACCTCAGCTTTGTCAAAGATTACTTCGACTGGTGCCATGACTTATGCTTTCATCCAAGCCATCGAGCGTGGACATGGAGATACATATGGTAACATGTTGAATGCAATGATCGATCTACCATCCGTAACACAGACAATGATGTTGGAGGTGGTATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0010941 GO:0010942 GO:0016787 GO:0019538 GO:0043067 GO:0043068 GO:0043170 GO:0044238 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C14 zf-LSD1

Protein Analysis

61

Amino Acids

6.46

Weight (kDa)

4.23

Isoelectric Point (pI)

7.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000588)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02170
fragaria_vesca	FvH4_7g08970 FvH4_7g08970 FvH4_7g08970 FvH4_7g26490
malus_domestica	MD01G1173500.v1.1 MD02G1221900.v1.1 MD05G1044000.v1.1 MD07G1094600.v1.1 MD07G1240400.v1.1 MD07G1240500.v1.1 MD10G1051100.v1.1 MD10G1051200.v1.1
prunus_persica	Prupe.2G118900_v2.0.a1 Prupe.2G269200_v2.0.a1 Prupe.8G059400_v2.0.a1
pyrus_communis	pycom01g18530 pycom01g18540 pycom02g18780 pycom05g03650 pycom07g07790 pycom07g21680 pycom10g03590
rosa_chinensis	RchiOBHm_Chr1g0344331 RchiOBHm_Chr1g0344461 RchiOBHm_Chr1g0344571 RchiOBHm_Chr1g0344661 RchiOBHm_Chr1g0344751 RchiOBHm_Chr1g0344811 RchiOBHm_Chr1g0344881 RchiOBHm_Chr1g0344901 RchiOBHm_Chr1g0344911 RchiOBHm_Chr1g0373091
rosa_laevigata	RLG00000028867 RLG00000028877 RLG00000028880 RLG00000028885 RLG00000028898
rosa_multiflora	Rmu_co8105290.1_g000001 Rmu_co8220756.1_g000001 Rmu_co8317965.1_g000001 Rmu_co8413861.1_g000001 Rmu_co8518347.1_g000001 Rmu_sc0000390.1_g000001 Rmu_sc0005177.1_g000002 Rmu_sc0007317.1_g000002 Rmu_sc0010876.1_g000003 Rmu_sc0013714.1_g000001 Rmu_sc0029558.1_g000002 Rmu_ssc0000167.1_g000004
rosa_roxburghii	Rroxscaffold_4G00284470 Rroxscaffold_4G00309530 Rroxscaffold_4G00309580 Rroxscaffold_4G00309590 Rroxscaffold_4G00309620 Rroxscaffold_4G00309630 Rroxscaffold_4G00309720 Rroxscaffold_4G00309880
rosa_rugosa	Rorug01G0173200 Rorug01G0173200 Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug01G0174900 Rorug01G0376100
rosa_samantha	Rh1CG175000 Rh1CG176200 Rh1CG177200 Rh1CG177800 Rh1CG177900 Rh1CG178000 Rh1CG361900 Rh1DG188500 Rh1DG188700 Rh1DG189400 Rh1DG379400
rosa_wichuraiana	Rw1G015680 Rw1G015800 Rw1G015810 Rw1G015870 Rw1G033900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	56
AflIII	ACRYGT	1 cut(s)	117
AgsI	TTSAA	1 cut(s)	124
AluBI	AGCT	1 cut(s)	32
AluI	AGCT	1 cut(s)	32
BanI	GGYRCC	1 cut(s)	56
BbvCI	CCTCAGC	1 cut(s)	28
BccI	CCATC	2 cut(s)	92, 151
BmiI	GGNNCC	1 cut(s)	58
Bpu10I	CCTNAGC	1 cut(s)	28
Bsa29I	ATCGAT	2 cut(s)	6, 135
Bse1I	ACTGG	1 cut(s)	58
Bse3DI	GCAATG	1 cut(s)	135
BseCI	ATCGAT	2 cut(s)	6, 135
BseGI	GGATG	2 cut(s)	75, 143
BseMI	GCAATG	1 cut(s)	135
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	1 cut(s)	58
BshNI	GGYRCC	1 cut(s)	56
BshVI	ATCGAT	2 cut(s)	6, 135
BsmI	GAATGC	1 cut(s)	130
Bsp143I	GATC	4 cut(s)	3, 7, 132, 136
BspCNI	CTCAG	1 cut(s)	41
BspDI	ATCGAT	2 cut(s)	6, 135
BspLI	GGNNCC	1 cut(s)	58
BspT107I	GGYRCC	1 cut(s)	56
BsrDI	GCAATG	1 cut(s)	135
BsrI	ACTGG	1 cut(s)	58
BssMI	GATC	4 cut(s)	3, 7, 132, 136
BstDEI	CTNAG	1 cut(s)	28
BstF5I	GGATG	2 cut(s)	75, 143
BstKTI	GATC	4 cut(s)	6, 10, 135, 139
BstMBI	GATC	4 cut(s)	3, 7, 132, 136
BstNSI	RCATGY	1 cut(s)	121
Bsu15I	ATCGAT	2 cut(s)	6, 135
BsuTUI	ATCGAT	2 cut(s)	6, 135
BtsCI	GGATG	2 cut(s)	75, 143
ClaI	ATCGAT	2 cut(s)	6, 135
CviAII	CATG	3 cut(s)	61, 98, 118
CviJI	RGCY	2 cut(s)	32, 83
CviKI_1	RGCY	2 cut(s)	32, 83
DdeI	CTNAG	1 cut(s)	28
DpnI	GATC	4 cut(s)	5, 9, 134, 138
DpnII	GATC	4 cut(s)	3, 7, 132, 136
FaeI	CATG	3 cut(s)	64, 101, 121
FaiI	YATR	6 cut(s)	62, 69, 99, 109, 111, 119
FatI	CATG	3 cut(s)	60, 97, 117
FauNDI	CATATG	1 cut(s)	109
FokI	GGATG	2 cut(s)	62, 130
Hin1II	CATG	3 cut(s)	64, 101, 121
Hpy166II	GTNNAC	1 cut(s)	95
Hpy8I	GTNNAC	1 cut(s)	95
HpyCH4V	TGCA	1 cut(s)	128
HpyF3I	CTNAG	1 cut(s)	28
Hsp92II	CATG	3 cut(s)	64, 101, 121
Kzo9I	GATC	4 cut(s)	3, 7, 132, 136
LpnPI	CCDG	1 cut(s)	39
MaeIII	GTNAC	2 cut(s)	113, 148
MalI	GATC	4 cut(s)	5, 9, 134, 138
MboI	GATC	4 cut(s)	3, 7, 132, 136
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	2 cut(s)	37, 163
Mva1269I	GAATGC	1 cut(s)	130
NdeI	CATATG	1 cut(s)	109
NdeII	GATC	4 cut(s)	3, 7, 132, 136
NlaIII	CATG	3 cut(s)	64, 101, 121
NlaIV	GGNNCC	1 cut(s)	58
NspI	RCATGY	1 cut(s)	121
PciI	ACATGT	1 cut(s)	117
PctI	GAATGC	1 cut(s)	130
PscI	ACATGT	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	58
Sau3AI	GATC	4 cut(s)	3, 7, 132, 136
SetI	ASST	3 cut(s)	29, 34, 174
SgeI	CNNG	7 cut(s)	66, 73, 92, 100, 104, 110, 130
TaqI	TCGA	4 cut(s)	6, 50, 87, 135
TspDTI	ATGAA	1 cut(s)	64
TspGWI	ACGGA	1 cut(s)	136
XceI	RCATGY	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.