Rroxscaffold_4G00309630

Metacaspase-1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000588
Physical Location & Seq
Forward (+)
31400627 .. 31404379
3753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00309630.1

Sequence Viewer

Length: 1722 bp
ATGTCAATCCTCCCACAATCTCAAGATCGCCGTCAAAGGCTTTGGCAACTCCGGCCAATTCCTCGCCAAAACCCTCGTCCGTCAGGGCCACACCATCCTCACCACTCCCGATCCGACCACTCCAAAATGACTCCCGGCCTCGTCGTTTCGTTCTTCTCCGACCCACATGAGCTCTACGAGCAACACCCCCAAGACTCTGCACCTCCATCATCTCCTCCTCCTCCTCACAATAATAGGAAATGGAAGGCCATCATTGCTCCCGACCCACCCAGCCAGAAATCAACATCTTTGCTTGTTTTGGCAATTGACTATGTGAATCATGCTTTATCTGTATTGGGCACTGTCCCTTATACTGTTGTTGTGGCCATGTGTCTTCTCAGAGCAAGTCCACCCAATGAGGTCCGCAACGATGCTGGCCGCAATAGATACAGCCCGCATCAGAGAATTTGCCAATGGTATCATTATCAATATGAATTTGATAAGAAGAATTTGATTCCCAGTATCGCATGCGCCAGTTCATATCCCCAGTATCCATCTCTCTGTTCGTCTCAAAAATCATTAAATTCAAACATTCACTCCCCTTCAACTTGTGCATGCACTTCTCCTCCTCCAGATTCCATGATGATGAGCAATTATGGAGGCCAACGACTACTAGTAGTCGACTGTTGCTATTGCCAGACCCAAATCCCGCTGCCTTCTGTGAGTCCTATATCCGTCCGCTGCGGCCGCTGCTATGCCAGTACCCGCGTCGCCTCTCCGGGCTTCCTCCGCTCCCCCTATAGTGCTGTACCCTATTATGTCCTTATAAACCCACCACCACACGCCGGCTTCCCCAATAGATCACCAGGACCTCCGCCGAACGTGCACAGGCCAAAGAAGGCTGTGATCTGTGGGATATCGTATAGATACTCGAGCCATGAGCTCAAGGGTGCCACCAATGACGCCATACGCATGAGGCATCTCCTCATCAGCAAGTTCAAGTTTCCAGAAGATTCCATTGTCATGCTCACTGAAGAAGAAACTGACCCATATAAGATTCCATATAAAAGCAATATTAAAGGGGCATTACGTTGGCTTGTACAAGGATGTCAACCGGGTGACTCCCTTCTGTTTTACTTCTCTGGTCATGGTTCACAGCTGAGGGAGCAGTATCCTGGTGATGAACTTGATGGATATGATGAAACCCTTTGTCCCCTTGACGTCGAAACCCAGGGTATGATTAGTGATGATTGGATAAATGCAACAATTGTTAGGCCCATTCCATATCGGGTCAAGCTTCATGCAATTATAGATTCTTGTAATAGTGGCACCATGCTGGATTTGCCATGGCTTTGCAGAATGGACTGGGGTGGAAACTATACATGGGACAAGGCATCAGGCGTATGGAAAGGAACAAGTGGTGGAGAAGTTATATGTATCAGTGGTTGTGATGACCATCAAACCTCTGCGGAAACACAATCAATCCCAGCAACAGGTGTCATGACTTCCTGCTTCATCCAAGCAATCAAGAGTGGACAGGCAGCCACATATGGGAGCCTACTCTATTTTATGCGTAATACCATTCGAAGTGGTGGTGGTGGTGGTGGTAGTGGTGGTGCTGTTACATCTCTTGCCAGCATGCTTCTAGCAGGCGGAAGTGTTGGTGGTGGTGGACTGAGACAGGATCCTCAATTAACTGCCTGCGACCGATTCGATGTGTACACGAAACCTTTTGCCCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C14 zf-LSD1

Protein Analysis

573

Amino Acids

63.05

Weight (kDa)

8.57

Isoelectric Point (pI)

55.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C14 PF00656 292 - 522 2.3e-28 Caspase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000588)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02170
fragaria_vesca FvH4_7g08970 FvH4_7g08970 FvH4_7g08970 FvH4_7g26490
malus_domestica MD01G1173500.v1.1 MD02G1221900.v1.1 MD05G1044000.v1.1 MD07G1094600.v1.1 MD07G1240400.v1.1 MD07G1240500.v1.1 MD10G1051100.v1.1 MD10G1051200.v1.1
prunus_persica Prupe.2G118900_v2.0.a1 Prupe.2G269200_v2.0.a1 Prupe.8G059400_v2.0.a1
pyrus_communis pycom01g18530 pycom01g18540 pycom02g18780 pycom05g03650 pycom07g07790 pycom07g21680 pycom10g03590
rosa_chinensis RchiOBHm_Chr1g0344331 RchiOBHm_Chr1g0344461 RchiOBHm_Chr1g0344571 RchiOBHm_Chr1g0344661 RchiOBHm_Chr1g0344751 RchiOBHm_Chr1g0344811 RchiOBHm_Chr1g0344881 RchiOBHm_Chr1g0344901 RchiOBHm_Chr1g0344911 RchiOBHm_Chr1g0373091
rosa_laevigata RLG00000028867 RLG00000028877 RLG00000028880 RLG00000028885 RLG00000028898
rosa_multiflora Rmu_co8105290.1_g000001 Rmu_co8220756.1_g000001 Rmu_co8317965.1_g000001 Rmu_co8413861.1_g000001 Rmu_co8518347.1_g000001 Rmu_sc0000390.1_g000001 Rmu_sc0005177.1_g000002 Rmu_sc0007317.1_g000002 Rmu_sc0010876.1_g000003 Rmu_sc0013714.1_g000001 Rmu_sc0029558.1_g000002 Rmu_ssc0000167.1_g000004
rosa_roxburghii Rroxscaffold_4G00284470 Rroxscaffold_4G00309530 Rroxscaffold_4G00309580 Rroxscaffold_4G00309590 Rroxscaffold_4G00309620 Rroxscaffold_4G00309630 Rroxscaffold_4G00309720 Rroxscaffold_4G00309880
rosa_rugosa Rorug01G0173200 Rorug01G0173200 Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug01G0174900 Rorug01G0376100
rosa_samantha Rh1CG175000 Rh1CG176200 Rh1CG177200 Rh1CG177800 Rh1CG177900 Rh1CG178000 Rh1CG361900 Rh1DG188500 Rh1DG188700 Rh1DG189400 Rh1DG379400
rosa_wichuraiana Rw1G015680 Rw1G015800 Rw1G015810 Rw1G015870 Rw1G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 806
AatII GACGTC 1 cut(s) 1203
AccB1I GGYRCC 2 cut(s) 929, 1307
AccBSI CCGCTC 1 cut(s) 771
AccI GTMKAC 1 cut(s) 660
AccII CGCG 1 cut(s) 747
AclWI GGATC 3 cut(s) 105, 1658, 1671
AcoI YGGCCR 4 cut(s) 53, 363, 415, 724
AcsI RAATTY 4 cut(s) 444, 473, 487, 562
AcuI CTGAAG 1 cut(s) 1032
AcyI GRCGYC 2 cut(s) 942, 1200
AfaI GTAC 4 cut(s) 742, 789, 1080, 1700
AfiI CCNNNNNNNGG 3 cut(s) 824, 1472, 1530
AgsI TTSAA 3 cut(s) 567, 585, 979
AhlI ACTAGT 1 cut(s) 652
AjnI CCWGG 3 cut(s) 844, 1153, 1209
AluBI AGCT 4 cut(s) 172, 922, 1138, 1276
AluI AGCT 4 cut(s) 172, 922, 1138, 1276
Alw21I GWGCWC 3 cut(s) 174, 867, 924
Alw26I GTCTC 2 cut(s) 552, 1651
Alw44I GTGCAC 1 cut(s) 863
AlwI GGATC 3 cut(s) 105, 1658, 1671
Ama87I CYCGRG 1 cut(s) 910
ApaLI GTGCAC 1 cut(s) 863
ApeKI GCWGC 4 cut(s) 691, 720, 729, 1520
ApoI RAATTY 4 cut(s) 444, 473, 487, 562
ArsI GACNNNNNNTTYG 2 cut(s) 61, 93
AspLEI GCGC 1 cut(s) 512
AspS9I GGNCC 4 cut(s) 86, 400, 848, 1254
AsuC2I CCSGG 3 cut(s) 135, 759, 1095
AsuHPI GGTGA 4 cut(s) 92, 834, 1109, 1169
AsuII TTCGAA 1 cut(s) 1564
AvaI CYCGRG 1 cut(s) 910
AvaII GGWCC 2 cut(s) 400, 848
BaeGI GKGCMC 2 cut(s) 341, 867
BalI TGGCCA 1 cut(s) 365
BamHI GGATCC 1 cut(s) 1663
BanI GGYRCC 2 cut(s) 929, 1307
BanII GRGCYC 2 cut(s) 174, 924
BbsI GAAGAC 1 cut(s) 365
Bbv12I GWGCWC 3 cut(s) 174, 867, 924
BbvCI CCTCAGC 1 cut(s) 1139
BbvI GCAGC 4 cut(s) 678, 707, 716, 1532
BccI CCATC 6 cut(s) 102, 214, 257, 541, 1163, 1443
BceAI ACGGC 1 cut(s) 15
BciT130I CCWGG 3 cut(s) 846, 1155, 1211
BciVI GTATCC 2 cut(s) 540, 1161
BcnI CCSGG 3 cut(s) 135, 759, 1095
BcoDI GTCTC 2 cut(s) 552, 1651
BcuI ACTAGT 1 cut(s) 652
BfaI CTAG 2 cut(s) 653, 1625
BfmI CTRYAG 1 cut(s) 778
BfuI GTATCC 2 cut(s) 540, 1161
BisI GCNGC 7 cut(s) 418, 692, 721, 724, 727, 730, 1521
BlsI GCNGC 7 cut(s) 419, 693, 722, 725, 728, 731, 1522
Bme1390I CCNGG 6 cut(s) 135, 759, 846, 1095, 1155, 1211
Bme18I GGWCC 2 cut(s) 400, 848
BmeT110I CYCGRG 1 cut(s) 910
BmgT120I GGNCC 4 cut(s) 86, 400, 848, 1254
BmiI GGNNCC 4 cut(s) 931, 1309, 1535, 1665
BmrFI CCNGG 6 cut(s) 135, 759, 846, 1095, 1155, 1211
BmrI ACTGGG 3 cut(s) 492, 520, 1354
BmsI GCATC 4 cut(s) 400, 445, 967, 1382
BmuI ACTGGG 3 cut(s) 492, 520, 1354
BpiI GAAGAC 1 cut(s) 365
BpmI CTGGAG 1 cut(s) 594
Bpu10I CCTNAGC 1 cut(s) 1139
Bpu14I TTCGAA 1 cut(s) 1564
BpuEI CTTGAG 2 cut(s) 6, 908
BpuMI CCSGG 3 cut(s) 135, 759, 1095
BsaBI GATNNNNATC 1 cut(s) 1434
BsaHI GRCGYC 2 cut(s) 942, 1200
BsaJI CCNNGG 3 cut(s) 1209, 1210, 1325
BsaXI ACNNNNNCTCC 4 cut(s) 560, 589, 590, 619
Bsc4I CCNNNNNNNGG 3 cut(s) 824, 1472, 1530
Bse118I RCCGGY 1 cut(s) 824
Bse1I ACTGG 5 cut(s) 498, 513, 526, 738, 1349
Bse3DI GCAATG 1 cut(s) 252
Bse8I GATNNNNATC 1 cut(s) 1434
BseBI CCWGG 3 cut(s) 846, 1155, 1211
BseDI CCNNGG 3 cut(s) 1209, 1210, 1325
BseGI GGATG 3 cut(s) 94, 1091, 1494
BseJI GATNNNNATC 1 cut(s) 1434
BseLI CCNNNNNNNGG 3 cut(s) 824, 1472, 1530
BseMI GCAATG 1 cut(s) 252
BseMII CTCAG 3 cut(s) 391, 1130, 1646
BseNI ACTGG 5 cut(s) 498, 513, 526, 738, 1349
BseRI GAGGAG 7 cut(s) 204, 207, 210, 213, 594, 597, 953
BseSI GKGCMC 2 cut(s) 341, 867
BseX3I CGGCCG 1 cut(s) 724
BseXI GCAGC 4 cut(s) 678, 707, 716, 1532
BseYI CCCAGC 2 cut(s) 269, 1465
BsgI GTGCAG 1 cut(s) 183
Bsh1236I CGCG 1 cut(s) 747
Bsh1285I CGRYCG 2 cut(s) 727, 1687
BshNI GGYRCC 2 cut(s) 929, 1307
BsiEI CGRYCG 2 cut(s) 727, 1687
BsiHKAI GWGCWC 3 cut(s) 174, 867, 924
BsiHKCI CYCGRG 1 cut(s) 910
BsiSI CCGG 5 cut(s) 52, 135, 758, 825, 1094
BslFI GGGAC 3 cut(s) 329, 1176, 1379
BslI CCNNNNNNNGG 3 cut(s) 824, 1472, 1530
BsmAI GTCTC 2 cut(s) 552, 1651
BsmBI CGTCTC 1 cut(s) 552
BsmFI GGGAC 3 cut(s) 329, 1176, 1379
BsoBI CYCGRG 1 cut(s) 910
Bsp119I TTCGAA 1 cut(s) 1564
Bsp1286I GDGCHC 4 cut(s) 174, 341, 867, 924
Bsp1407I TGTACA 2 cut(s) 1078, 1698
Bsp143I GATC 5 cut(s) 25, 110, 839, 885, 1663
Bsp19I CCATGG 1 cut(s) 1325
BspCNI CTCAG 3 cut(s) 390, 1131, 1647
BspFNI CGCG 1 cut(s) 747
BspHI TCATGA 1 cut(s) 1479
BspLI GGNNCC 4 cut(s) 931, 1309, 1535, 1665
BspPI GGATC 3 cut(s) 105, 1658, 1671
BspT104I TTCGAA 1 cut(s) 1564
BspT107I GGYRCC 2 cut(s) 929, 1307
BsrBI CCGCTC 1 cut(s) 771
BsrDI GCAATG 1 cut(s) 252
BsrFI RCCGGY 1 cut(s) 824
BsrGI TGTACA 2 cut(s) 1078, 1698
BsrI ACTGG 5 cut(s) 498, 513, 526, 738, 1349
BssAI RCCGGY 1 cut(s) 824
BssECI CCNNGG 3 cut(s) 1209, 1210, 1325
BssMI GATC 5 cut(s) 25, 110, 839, 885, 1663
BssNI GRCGYC 2 cut(s) 942, 1200
BssT1I CCWWGG 1 cut(s) 1325
Bst2UI CCWGG 3 cut(s) 846, 1155, 1211
Bst4CI ACNGT 3 cut(s) 343, 355, 665
BstACI GRCGYC 2 cut(s) 942, 1200
BstAUI TGTACA 2 cut(s) 1078, 1698
BstBI TTCGAA 1 cut(s) 1564
BstC8I GCNNGC 9 cut(s) 415, 434, 508, 595, 826, 1615, 1619, 1630, 1681
BstDEI CTNAG 3 cut(s) 377, 1139, 1655
BstDSI CCRYGG 1 cut(s) 1325
BstF5I GGATG 3 cut(s) 94, 1091, 1494
BstFNI CGCG 1 cut(s) 747
BstHHI GCGC 1 cut(s) 512
BstKTI GATC 5 cut(s) 28, 113, 842, 888, 1666
BstMAI GTCTC 2 cut(s) 552, 1651
BstMBI GATC 5 cut(s) 25, 110, 839, 885, 1663
BstMCI CGRYCG 2 cut(s) 727, 1687
BstMWI GCNNNNNNNGC 9 cut(s) 52, 178, 254, 726, 729, 768, 862, 1144, 1321
BstNI CCWGG 3 cut(s) 846, 1155, 1211
BstNSI RCATGY 3 cut(s) 510, 597, 1621
BstSCI CCNGG 6 cut(s) 133, 757, 844, 1093, 1153, 1209
BstSFI CTRYAG 1 cut(s) 778
BstSLI GKGCMC 2 cut(s) 341, 867
BstUI CGCG 1 cut(s) 747
BstV1I GCAGC 4 cut(s) 678, 707, 716, 1532
BstV2I GAAGAC 1 cut(s) 365
BstX2I RGATCY 1 cut(s) 1663
BstYI RGATCY 1 cut(s) 1663
BstZI CGGCCG 1 cut(s) 724
BsuI GTATCC 2 cut(s) 540, 1161
BtgI CCRYGG 1 cut(s) 1325
BtsCI GGATG 3 cut(s) 94, 1091, 1494
BtsIMutI CAGTG 3 cut(s) 339, 1008, 1426
Cac8I GCNNGC 9 cut(s) 415, 434, 508, 595, 826, 1615, 1619, 1630, 1681
CciI TCATGA 1 cut(s) 1479
CciNI GCGGCCGC 1 cut(s) 724
CfoI GCGC 1 cut(s) 512
Cfr10I RCCGGY 1 cut(s) 824
Cfr13I GGNCC 4 cut(s) 86, 400, 848, 1254
CseI GACGC 2 cut(s) 736, 950
Csp6I GTAC 4 cut(s) 741, 788, 1079, 1699
CviQI GTAC 4 cut(s) 741, 788, 1079, 1699
DdeI CTNAG 3 cut(s) 377, 1139, 1655
DpnI GATC 5 cut(s) 27, 112, 841, 887, 1665
DpnII GATC 5 cut(s) 25, 110, 839, 885, 1663
EaeI YGGCCR 4 cut(s) 53, 363, 415, 724
EagI CGGCCG 1 cut(s) 724
EciI GGCGGA 2 cut(s) 843, 1647
Ecl136II GAGCTC 2 cut(s) 172, 922
EclXI CGGCCG 1 cut(s) 724
Eco130I CCWWGG 1 cut(s) 1325
Eco24I GRGCYC 2 cut(s) 174, 924
Eco32I GATATC 1 cut(s) 897
Eco47I GGWCC 2 cut(s) 400, 848
Eco52I CGGCCG 1 cut(s) 724
Eco53kI GAGCTC 2 cut(s) 172, 922
Eco57I CTGAAG 1 cut(s) 1032
Eco88I CYCGRG 1 cut(s) 910
EcoICRI GAGCTC 2 cut(s) 172, 922
EcoO109I RGGNCCY 1 cut(s) 848
EcoRII CCWGG 3 cut(s) 844, 1153, 1209
EcoRV GATATC 1 cut(s) 897
EcoT14I CCWWGG 1 cut(s) 1325
EcoT38I GRGCYC 2 cut(s) 174, 924
ErhI CCWWGG 1 cut(s) 1325
Esp3I CGTCTC 1 cut(s) 552
FaqI GGGAC 3 cut(s) 329, 1176, 1379
FauI CCCGC 3 cut(s) 441, 696, 752
FauNDI CATATG 1 cut(s) 1528
FblI GTMKAC 1 cut(s) 660
Fnu4HI GCNGC 7 cut(s) 418, 692, 721, 724, 727, 730, 1521
FokI GGATG 3 cut(s) 81, 1098, 1481
FriOI GRGCYC 2 cut(s) 174, 924
Fsp4HI GCNGC 7 cut(s) 418, 692, 721, 724, 727, 730, 1521
FspBI CTAG 2 cut(s) 653, 1625
GlaI GCGC 1 cut(s) 511
GluI GCNGC 7 cut(s) 418, 692, 721, 724, 727, 730, 1521
GsaI CCCAGC 2 cut(s) 273, 1469
GsuI CTGGAG 1 cut(s) 594
HapII CCGG 5 cut(s) 52, 135, 758, 825, 1094
HgaI GACGC 2 cut(s) 736, 950
HhaI GCGC 1 cut(s) 512
Hin1I GRCGYC 2 cut(s) 942, 1200
Hin6I GCGC 1 cut(s) 510
HinP1I GCGC 1 cut(s) 510
HincII GTYRAC 2 cut(s) 661, 1091
HindII GTYRAC 2 cut(s) 661, 1091
HindIII AAGCTT 1 cut(s) 1274
HpaII CCGG 5 cut(s) 52, 135, 758, 825, 1094
HphI GGTGA 4 cut(s) 92, 834, 1109, 1169
Hpy166II GTNNAC 9 cut(s) 389, 661, 865, 1091, 1133, 1514, 1652, 1699, 1701
Hpy188I TCNGA 4 cut(s) 115, 160, 380, 441
Hpy188III TCNNGA 7 cut(s) 23, 108, 260, 611, 986, 1480, 1507
Hpy8I GTNNAC 9 cut(s) 389, 661, 865, 1091, 1133, 1514, 1652, 1699, 1701
Hpy99I CGWCG 3 cut(s) 146, 752, 1205
HpyAV CCTTC 5 cut(s) 238, 591, 705, 871, 1115
HpyCH4III ACNGT 3 cut(s) 343, 355, 665
HpyCH4IV ACGT 3 cut(s) 861, 1069, 1200
HpyCH4V TGCA 7 cut(s) 200, 593, 597, 865, 1241, 1283, 1335
HpyF10VI GCNNNNNNNGC 9 cut(s) 52, 178, 254, 726, 729, 768, 862, 1144, 1321
HpyF3I CTNAG 3 cut(s) 377, 1139, 1655
HpySE526I ACGT 3 cut(s) 861, 1069, 1200
Hsp92I GRCGYC 2 cut(s) 942, 1200
HspAI GCGC 1 cut(s) 510
KroI GCCGGC 1 cut(s) 824
KroNI GCCGGC 1 cut(s) 826
Kzo9I GATC 5 cut(s) 25, 110, 839, 885, 1663
LmnI GCTCC 4 cut(s) 262, 776, 1144, 1533
Lsp1109I GCAGC 4 cut(s) 678, 707, 716, 1532
LweI GCATC 4 cut(s) 400, 445, 967, 1382
MaeI CTAG 2 cut(s) 653, 1625
MaeII ACGT 3 cut(s) 861, 1069, 1200
MaeIII GTNAC 2 cut(s) 1097, 1600
MalI GATC 5 cut(s) 27, 112, 841, 887, 1665
MbiI CCGCTC 1 cut(s) 771
MboI GATC 5 cut(s) 25, 110, 839, 885, 1663
MboII GAAGA 6 cut(s) 145, 365, 496, 1001, 1025, 1028
MfeI CAATTG 2 cut(s) 303, 1245
MflI RGATCY 1 cut(s) 1663
MhlI GDGCHC 4 cut(s) 174, 341, 867, 924
MlsI TGGCCA 1 cut(s) 365
MluNI TGGCCA 1 cut(s) 365
MlyI GAGTC 4 cut(s) 124, 188, 712, 1094
MmeI TCCRAC 2 cut(s) 138, 183
Mox20I TGGCCA 1 cut(s) 365
MroNI GCCGGC 1 cut(s) 824
MscI TGGCCA 1 cut(s) 365
MseI TTAA 3 cut(s) 560, 1056, 1673
MslI CAYNNNNRTG 3 cut(s) 623, 950, 1001
Msp20I TGGCCA 1 cut(s) 365
MspA1I CMGCKG 4 cut(s) 691, 720, 729, 1138
MspI CCGG 5 cut(s) 52, 135, 758, 825, 1094
MspR9I CCNGG 6 cut(s) 135, 759, 846, 1095, 1155, 1211
MunI CAATTG 2 cut(s) 303, 1245
MvaI CCWGG 3 cut(s) 846, 1155, 1211
MvnI CGCG 1 cut(s) 747
MwoI GCNNNNNNNGC 9 cut(s) 52, 178, 254, 726, 729, 768, 862, 1144, 1321
NaeI GCCGGC 1 cut(s) 826
NciI CCSGG 3 cut(s) 135, 759, 1095
NcoI CCATGG 1 cut(s) 1325
NdeI CATATG 1 cut(s) 1528
NdeII GATC 5 cut(s) 25, 110, 839, 885, 1663
NgoMIV GCCGGC 1 cut(s) 824
NlaIV GGNNCC 4 cut(s) 931, 1309, 1535, 1665
NmuCI GTSAC 1 cut(s) 1097
NotI GCGGCCGC 1 cut(s) 724
NspI RCATGY 3 cut(s) 510, 597, 1621
NspV TTCGAA 1 cut(s) 1564
PaeI GCATGC 3 cut(s) 510, 597, 1621
PaeR7I CTCGAG 1 cut(s) 910
PagI TCATGA 1 cut(s) 1479
PasI CCCWGGG 1 cut(s) 1210
PdiI GCCGGC 1 cut(s) 826
PfeI GAWTC 7 cut(s) 316, 493, 614, 992, 1036, 1292, 1689
PkrI GCNGC 7 cut(s) 419, 693, 722, 725, 728, 731, 1522
PleI GAGTC 4 cut(s) 124, 188, 711, 1094
PpsI GAGTC 4 cut(s) 124, 188, 711, 1094
PpuMI RGGWCCY 1 cut(s) 848
PsiI TTATAA 1 cut(s) 806
Psp124BI GAGCTC 2 cut(s) 174, 924
Psp5II RGGWCCY 1 cut(s) 848
Psp6I CCWGG 3 cut(s) 844, 1153, 1209
PspFI CCCAGC 2 cut(s) 269, 1465
PspGI CCWGG 3 cut(s) 844, 1153, 1209
PspN4I GGNNCC 4 cut(s) 931, 1309, 1535, 1665
PspPI GGNCC 4 cut(s) 86, 400, 848, 1254
PspPPI RGGWCCY 1 cut(s) 848
PspXI VCTCGAGB 1 cut(s) 910
PsuI RGATCY 1 cut(s) 1663
PvuII CAGCTG 1 cut(s) 1138
RsaI GTAC 4 cut(s) 742, 789, 1080, 1700
RsaNI GTAC 4 cut(s) 741, 788, 1079, 1699
RseI CAYNNNNRTG 3 cut(s) 623, 950, 1001
SacI GAGCTC 2 cut(s) 174, 924
SalI GTCGAC 1 cut(s) 659
SaqAI TTAA 3 cut(s) 560, 1056, 1673
SatI GCNGC 7 cut(s) 418, 692, 721, 724, 727, 730, 1521
Sau3AI GATC 5 cut(s) 25, 110, 839, 885, 1663
Sau96I GGNCC 4 cut(s) 86, 400, 848, 1254
SchI GAGTC 4 cut(s) 124, 188, 712, 1094
ScrFI CCNGG 6 cut(s) 135, 759, 846, 1095, 1155, 1211
SduI GDGCHC 4 cut(s) 174, 341, 867, 924
SfaNI GCATC 4 cut(s) 400, 445, 967, 1382
SfcI CTRYAG 1 cut(s) 778
Sfr274I CTCGAG 1 cut(s) 910
SfuI TTCGAA 1 cut(s) 1564
SinI GGWCC 2 cut(s) 400, 848
SlaI CTCGAG 1 cut(s) 910
SmiMI CAYNNNNRTG 3 cut(s) 623, 950, 1001
SmlI CTYRAG 3 cut(s) 21, 910, 923
SmoI CTYRAG 3 cut(s) 21, 910, 923
SpeI ACTAGT 1 cut(s) 652
SphI GCATGC 3 cut(s) 510, 597, 1621
SspI AATATT 1 cut(s) 1054
SspMI CTAG 2 cut(s) 653, 1625
SstI GAGCTC 2 cut(s) 174, 924
StyD4I CCNGG 6 cut(s) 133, 757, 844, 1093, 1153, 1209
StyI CCWWGG 1 cut(s) 1325
TaaI ACNGT 3 cut(s) 343, 355, 665
TaiI ACGT 3 cut(s) 864, 1072, 1203
TaqI TCGA 5 cut(s) 660, 911, 1203, 1564, 1692
TaqII GACCGA 1 cut(s) 1701
TatI WGTACW 2 cut(s) 1078, 1698
TauI GCSGC 3 cut(s) 420, 726, 729
TfiI GAWTC 7 cut(s) 316, 493, 614, 992, 1036, 1292, 1689
Tru1I TTAA 3 cut(s) 560, 1056, 1673
Tru9I TTAA 3 cut(s) 560, 1056, 1673
TscAI CASTG 3 cut(s) 346, 1015, 1426
TseFI GTSAC 1 cut(s) 1097
TseI GCWGC 4 cut(s) 691, 720, 729, 1520
Tsp45I GTSAC 1 cut(s) 1097
TspDTI ATGAA 6 cut(s) 486, 507, 1176, 1194, 1268, 1483
TspGWI ACGGA 2 cut(s) 69, 703
TspRI CASTG 3 cut(s) 346, 1015, 1426
VneI GTGCAC 1 cut(s) 863
VpaK11BI GGWCC 2 cut(s) 400, 848
XapI RAATTY 4 cut(s) 444, 473, 487, 562
XceI RCATGY 3 cut(s) 510, 597, 1621
XhoI CTCGAG 1 cut(s) 910
XmiI GTMKAC 1 cut(s) 660
XspI CTAG 2 cut(s) 653, 1625
ZraI GACGTC 1 cut(s) 1201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.