MD07G1240400.v1.1

Metacaspase-1-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
31191515 .. 31194129
2615 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1240400.v1.1.491

Sequence Viewer

Length: 1101 bp
ATGTTGTTGTTGGTAGACTGCTCCGGCTGCCACACGCCGCTGCAGCTGCCGCCCGGCGCTCGGACGATCCGCTGCGCCCTGTGCCACGCCGTCACTCGCATCGCCGACTCCCGCGCTCTTCCTCCTCCCCCTTATTCCTCCTCCTCCTTCTCCTCATCCTCCTCATCTTACCACCACGCACCTCCTCCATCCCCTTCTCCCTACACCCACGCGCCGCCGGTGCCTTCGCCGTCGGCGCACGGGCGGAAGCGGGCCGTCATATGCGCCGTGTCGTATAAGCGGTCCCGGCACGAACTCAAGGGCTGCATTAACGACGCCAAGTGTATGAAGTACTTGCTGGTCAACAAGTTCAACTTTCCCGAGTCCTCCATTCTCATGCTCACCGAAGAAGAAGTTGATCCTTATAGGCGCCCAACCAAGCAAAATATGAGAATGGCAATGTATTGGCTTGTGCAAGGTTGTCAAGCAGGGGATTCTTTGGTGTTTCATTATTCTGGTCATGGATCACAACAGAGGAACTACACTGGGGATGAGGTGGATGGATTTGATGAAACGCTTTGTCCTTCGGATTTTGAGACTCAAGGGATGATTGTTGATGATGAGATCAATGCGACAATTGTCAGACCTCTACCTGCTGGGGCAAGGCTTCATGCAATTGTGGACGCTTGTCATAGCGGTACTGTGCTAGATTTACCATATCTCTGTAGGATGGACAGAAACGGGAAGTATGTATGGGAGGATCATCGCCCTAGATCAGGTGTTTGGAAAGGAACAAACGGTGGAGAGGCCATTTCCTTTAGTGGTTGTGATGATGATCAAACCTCTGCCGATACCTCAGCTTTGTCCAAGATTACTTCGACTGGTGCCATGACTTATGCTTTCATCCAAGCCATCGAGCGTGGACATGGAACTACATATGGGAACATATTGAATGCAATGCGATCTACCATCCGTAACACAGATAATGGTGTTGGAGGTGGTATTGTGACATCTCTTATCTCCATGCTTTTGACAGGAGGGAGTCTTGGCGGGTTAAGACAGGAACCACAGTTAACTGCCCATCAAGCATTTGATGTGTATGCAAAGCCTTTCTTCTTGTAA

Protein Analysis

367

Amino Acids

39.86

Weight (kDa)

6.91

Isoelectric Point (pI)

52.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-LSD1 PF06943 7 - 31 2.1e-10 LSD1 zinc finger
Peptidase_C14 PF00656 83 - 355 5.8e-38 Caspase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000588)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02170
fragaria_vesca FvH4_7g08970 FvH4_7g08970 FvH4_7g08970 FvH4_7g26490
malus_domestica MD01G1173500.v1.1 MD02G1221900.v1.1 MD05G1044000.v1.1 MD07G1094600.v1.1 MD07G1240400.v1.1 MD07G1240500.v1.1 MD10G1051100.v1.1 MD10G1051200.v1.1
prunus_persica Prupe.2G118900_v2.0.a1 Prupe.2G269200_v2.0.a1 Prupe.8G059400_v2.0.a1
pyrus_communis pycom01g18530 pycom01g18540 pycom02g18780 pycom05g03650 pycom07g07790 pycom07g21680 pycom10g03590
rosa_chinensis RchiOBHm_Chr1g0344331 RchiOBHm_Chr1g0344461 RchiOBHm_Chr1g0344571 RchiOBHm_Chr1g0344661 RchiOBHm_Chr1g0344751 RchiOBHm_Chr1g0344811 RchiOBHm_Chr1g0344881 RchiOBHm_Chr1g0344901 RchiOBHm_Chr1g0344911 RchiOBHm_Chr1g0373091
rosa_laevigata RLG00000028867 RLG00000028877 RLG00000028880 RLG00000028885 RLG00000028898
rosa_multiflora Rmu_co8105290.1_g000001 Rmu_co8220756.1_g000001 Rmu_co8317965.1_g000001 Rmu_co8413861.1_g000001 Rmu_co8518347.1_g000001 Rmu_sc0000390.1_g000001 Rmu_sc0005177.1_g000002 Rmu_sc0007317.1_g000002 Rmu_sc0010876.1_g000003 Rmu_sc0013714.1_g000001 Rmu_sc0029558.1_g000002 Rmu_ssc0000167.1_g000004
rosa_roxburghii Rroxscaffold_4G00284470 Rroxscaffold_4G00309530 Rroxscaffold_4G00309580 Rroxscaffold_4G00309590 Rroxscaffold_4G00309620 Rroxscaffold_4G00309630 Rroxscaffold_4G00309720 Rroxscaffold_4G00309880
rosa_rugosa Rorug01G0173200 Rorug01G0173200 Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug01G0174900 Rorug01G0376100
rosa_samantha Rh1CG175000 Rh1CG176200 Rh1CG177200 Rh1CG177800 Rh1CG177900 Rh1CG178000 Rh1CG361900 Rh1DG188500 Rh1DG188700 Rh1DG189400 Rh1DG379400
rosa_wichuraiana Rw1G015680 Rw1G015800 Rw1G015810 Rw1G015870 Rw1G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 640
AccB1I GGYRCC 3 cut(s) 220, 408, 863
AccI GTMKAC 1 cut(s) 15
AccII CGCG 2 cut(s) 114, 212
AclWI GGATC 4 cut(s) 61, 392, 511, 747
AcyI GRCGYC 2 cut(s) 315, 409
AfaI GTAC 2 cut(s) 332, 679
AfiI CCNNNNNNNGG 2 cut(s) 60, 755
AgsI TTSAA 2 cut(s) 352, 931
AluBI AGCT 2 cut(s) 46, 839
AluI AGCT 2 cut(s) 46, 839
Alw26I GTCTC 1 cut(s) 569
AlwI GGATC 4 cut(s) 61, 392, 511, 747
Ama87I CYCGRG 1 cut(s) 359
AoxI GGCC 2 cut(s) 252, 786
ApeKI GCWGC 6 cut(s) 27, 40, 43, 46, 72, 303
AspLEI GCGC 7 cut(s) 59, 77, 116, 214, 238, 266, 411
AspS9I GGNCC 2 cut(s) 252, 282
AsuC2I CCSGG 2 cut(s) 54, 286
AsuHPI GGTGA 1 cut(s) 373
AvaI CYCGRG 1 cut(s) 359
AvaII GGWCC 1 cut(s) 282
BanI GGYRCC 3 cut(s) 220, 408, 863
BbvCI CCTCAGC 1 cut(s) 835
BbvI GCAGC 6 cut(s) 14, 27, 33, 55, 59, 290
BccI CCATC 6 cut(s) 196, 533, 703, 899, 956, 1068
BceAI ACGGC 4 cut(s) 74, 214, 239, 251
BclI TGATCA 1 cut(s) 814
BcnI CCSGG 2 cut(s) 54, 286
BcoDI GTCTC 1 cut(s) 569
BfaI CTAG 2 cut(s) 686, 750
BfmI CTRYAG 2 cut(s) 41, 703
BfoI RGCGCY 2 cut(s) 60, 412
BfuAI ACCTGC 1 cut(s) 640
BisI GCNGC 9 cut(s) 28, 38, 41, 44, 47, 50, 73, 215, 304
BlsI GCNGC 9 cut(s) 29, 39, 42, 45, 48, 51, 74, 216, 305
BmcAI AGTACT 1 cut(s) 332
Bme1390I CCNGG 2 cut(s) 54, 286
Bme18I GGWCC 1 cut(s) 282
BmeT110I CYCGRG 1 cut(s) 359
BmgT120I GGNCC 2 cut(s) 252, 282
BmiI GGNNCC 5 cut(s) 222, 284, 410, 865, 1044
BmrFI CCNGG 2 cut(s) 54, 286
BmrI ACTGGG 1 cut(s) 534
BmsI GCATC 1 cut(s) 108
BmuI ACTGGG 1 cut(s) 534
BoxI GACNNNNGTC 2 cut(s) 617, 666
Bpu10I CCTNAGC 1 cut(s) 835
BpuEI CTTGAG 2 cut(s) 281, 564
BpuMI CCSGG 2 cut(s) 54, 286
BsaBI GATNNNNATC 1 cut(s) 813
BsaHI GRCGYC 2 cut(s) 315, 409
Bsc4I CCNNNNNNNGG 2 cut(s) 60, 755
Bse118I RCCGGY 1 cut(s) 217
Bse1I ACTGG 2 cut(s) 529, 865
Bse3DI GCAATG 2 cut(s) 444, 942
Bse8I GATNNNNATC 1 cut(s) 813
BseGI GGATG 8 cut(s) 155, 188, 535, 544, 591, 714, 882, 948
BseJI GATNNNNATC 1 cut(s) 813
BseLI CCNNNNNNNGG 2 cut(s) 60, 755
BseMI GCAATG 2 cut(s) 444, 942
BseMII CTCAG 1 cut(s) 849
BseNI ACTGG 2 cut(s) 529, 865
BseRI GAGGAG 6 cut(s) 114, 130, 133, 142, 151, 174
BseXI GCAGC 6 cut(s) 14, 27, 33, 55, 59, 290
BseYI CCCAGC 1 cut(s) 635
Bsh1236I CGCG 2 cut(s) 114, 212
BshFI GGCC 2 cut(s) 254, 788
BshNI GGYRCC 3 cut(s) 220, 408, 863
BsiHKCI CYCGRG 1 cut(s) 359
BsiSI CCGG 4 cut(s) 24, 54, 218, 286
BslFI GGGAC 1 cut(s) 268
BslI CCNNNNNNNGG 2 cut(s) 60, 755
BsmAI GTCTC 1 cut(s) 569
BsmFI GGGAC 1 cut(s) 268
BsmI GAATGC 1 cut(s) 937
BsnI GGCC 2 cut(s) 254, 788
BsoBI CYCGRG 1 cut(s) 359
Bsp143I GATC 8 cut(s) 66, 397, 503, 603, 739, 752, 814, 941
BspANI GGCC 2 cut(s) 254, 788
BspCNI CTCAG 1 cut(s) 848
BspFNI CGCG 2 cut(s) 114, 212
BspLI GGNNCC 5 cut(s) 222, 284, 410, 865, 1044
BspMAI CTGCAG 1 cut(s) 45
BspMI ACCTGC 1 cut(s) 640
BspPI GGATC 4 cut(s) 61, 392, 511, 747
BspQI GCTCTTC 1 cut(s) 123
BspT107I GGYRCC 3 cut(s) 220, 408, 863
BsrDI GCAATG 2 cut(s) 444, 942
BsrFI RCCGGY 1 cut(s) 217
BsrI ACTGG 2 cut(s) 529, 865
BssAI RCCGGY 1 cut(s) 217
BssMI GATC 8 cut(s) 66, 397, 503, 603, 739, 752, 814, 941
BssNI GRCGYC 2 cut(s) 315, 409
Bst4CI ACNGT 3 cut(s) 682, 779, 1050
Bst6I CTCTTC 1 cut(s) 123
BstACI GRCGYC 2 cut(s) 315, 409
BstC8I GCNNGC 1 cut(s) 252
BstDEI CTNAG 1 cut(s) 835
BstENI CCTNNNNNAGG 1 cut(s) 753
BstF5I GGATG 8 cut(s) 155, 188, 535, 544, 591, 714, 882, 948
BstFNI CGCG 2 cut(s) 114, 212
BstH2I RGCGCY 2 cut(s) 60, 412
BstHHI GCGC 7 cut(s) 59, 77, 116, 214, 238, 266, 411
BstKTI GATC 8 cut(s) 69, 400, 506, 606, 742, 755, 817, 944
BstMAI GTCTC 1 cut(s) 569
BstMBI GATC 8 cut(s) 66, 397, 503, 603, 739, 752, 814, 941
BstMWI GCNNNNNNNGC 9 cut(s) 27, 43, 46, 49, 81, 220, 235, 286, 1064
BstPAI GACNNNNGTC 2 cut(s) 617, 666
BstSCI CCNGG 2 cut(s) 52, 284
BstSFI CTRYAG 2 cut(s) 41, 703
BstUI CGCG 2 cut(s) 114, 212
BstV1I GCAGC 6 cut(s) 14, 27, 33, 55, 59, 290
BsuRI GGCC 2 cut(s) 254, 788
BtgZI GCGATG 2 cut(s) 85, 728
BtsCI GGATG 8 cut(s) 155, 188, 535, 544, 591, 714, 882, 948
BtsIMutI CAGTG 1 cut(s) 522
BveI ACCTGC 1 cut(s) 640
Cac8I GCNNGC 1 cut(s) 252
CfoI GCGC 7 cut(s) 59, 77, 116, 214, 238, 266, 411
Cfr10I RCCGGY 1 cut(s) 217
Cfr13I GGNCC 2 cut(s) 252, 282
CseI GACGC 2 cut(s) 323, 671
Csp6I GTAC 2 cut(s) 331, 678
CviAII CATG 6 cut(s) 376, 500, 650, 868, 905, 1003
CviQI GTAC 2 cut(s) 331, 678
DdeI CTNAG 1 cut(s) 835
DinI GGCGCC 1 cut(s) 410
DpnI GATC 8 cut(s) 68, 399, 505, 605, 741, 754, 816, 943
DpnII GATC 8 cut(s) 66, 397, 503, 603, 739, 752, 814, 941
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
EciI GGCGGA 1 cut(s) 259
Eco47I GGWCC 1 cut(s) 282
Eco88I CYCGRG 1 cut(s) 359
EcoNI CCTNNNNNAGG 1 cut(s) 753
EgeI GGCGCC 1 cut(s) 410
EheI GGCGCC 1 cut(s) 410
FaeI CATG 6 cut(s) 379, 503, 653, 871, 908, 1006
FalI AAGNNNNNCTT 3 cut(s) 338, 370, 1076
FaqI GGGAC 1 cut(s) 268
FatI CATG 6 cut(s) 375, 499, 649, 867, 904, 1002
FauI CCCGC 3 cut(s) 119, 243, 1022
FauNDI CATATG 2 cut(s) 260, 916
FbaI TGATCA 1 cut(s) 814
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 9 cut(s) 28, 38, 41, 44, 47, 50, 73, 215, 304
FokI GGATG 8 cut(s) 142, 175, 542, 551, 598, 721, 869, 935
Fsp4HI GCNGC 9 cut(s) 28, 38, 41, 44, 47, 50, 73, 215, 304
FspBI CTAG 2 cut(s) 686, 750
GlaI GCGC 7 cut(s) 58, 76, 115, 213, 237, 265, 410
GluI GCNGC 9 cut(s) 28, 38, 41, 44, 47, 50, 73, 215, 304
GsaI CCCAGC 1 cut(s) 639
HaeII RGCGCY 2 cut(s) 60, 412
HaeIII GGCC 2 cut(s) 254, 788
HapII CCGG 4 cut(s) 24, 54, 218, 286
HgaI GACGC 2 cut(s) 323, 671
HhaI GCGC 7 cut(s) 59, 77, 116, 214, 238, 266, 411
Hin1I GRCGYC 2 cut(s) 315, 409
Hin1II CATG 6 cut(s) 379, 503, 653, 871, 908, 1006
Hin6I GCGC 7 cut(s) 57, 75, 114, 212, 236, 264, 409
HinP1I GCGC 7 cut(s) 57, 75, 114, 212, 236, 264, 409
HincII GTYRAC 2 cut(s) 343, 1053
HindII GTYRAC 2 cut(s) 343, 1053
HinfI GANTC 5 cut(s) 107, 362, 473, 577, 1021
HpaI GTTAAC 1 cut(s) 1053
HpaII CCGG 4 cut(s) 24, 54, 218, 286
HphI GGTGA 1 cut(s) 373
Hpy166II GTNNAC 5 cut(s) 16, 343, 661, 902, 1053
Hpy188I TCNGA 3 cut(s) 63, 568, 623
Hpy188III TCNNGA 1 cut(s) 359
Hpy8I GTNNAC 5 cut(s) 16, 343, 661, 902, 1053
Hpy99I CGWCG 2 cut(s) 235, 317
HpyAV CCTTC 4 cut(s) 157, 204, 234, 573
HpyCH4III ACNGT 3 cut(s) 682, 779, 1050
HpyCH4V TGCA 6 cut(s) 43, 306, 454, 653, 935, 1082
HpyF10VI GCNNNNNNNGC 9 cut(s) 27, 43, 46, 49, 81, 220, 235, 286, 1064
HpyF3I CTNAG 1 cut(s) 835
Hsp92I GRCGYC 2 cut(s) 315, 409
Hsp92II CATG 6 cut(s) 379, 503, 653, 871, 908, 1006
HspAI GCGC 7 cut(s) 57, 75, 114, 212, 236, 264, 409
KasI GGCGCC 1 cut(s) 408
Ksp22I TGATCA 1 cut(s) 814
KspAI GTTAAC 1 cut(s) 1053
Kzo9I GATC 8 cut(s) 66, 397, 503, 603, 739, 752, 814, 941
LguI GCTCTTC 1 cut(s) 123
LmnI GCTCC 1 cut(s) 26
Lsp1109I GCAGC 6 cut(s) 14, 27, 33, 55, 59, 290
LweI GCATC 1 cut(s) 108
MaeI CTAG 2 cut(s) 686, 750
MaeIII GTNAC 3 cut(s) 91, 953, 985
MalI GATC 8 cut(s) 68, 399, 505, 605, 741, 754, 816, 943
MboI GATC 8 cut(s) 66, 397, 503, 603, 739, 752, 814, 941
MboII GAAGA 4 cut(s) 110, 398, 401, 1084
MfeI CAATTG 2 cut(s) 615, 654
MluCI AATT 2 cut(s) 615, 654
Mly113I GGCGCC 1 cut(s) 409
MlyI GAGTC 4 cut(s) 101, 371, 571, 1030
MmeI TCCRAC 1 cut(s) 952
MseI TTAA 3 cut(s) 309, 1034, 1052
MslI CAYNNNNRTG 1 cut(s) 374
MspA1I CMGCKG 3 cut(s) 40, 46, 72
MspI CCGG 4 cut(s) 24, 54, 218, 286
MspR9I CCNGG 2 cut(s) 54, 286
MunI CAATTG 2 cut(s) 615, 654
Mva1269I GAATGC 1 cut(s) 937
MvnI CGCG 2 cut(s) 114, 212
MwoI GCNNNNNNNGC 9 cut(s) 27, 43, 46, 49, 81, 220, 235, 286, 1064
NarI GGCGCC 1 cut(s) 409
NciI CCSGG 2 cut(s) 54, 286
NdeI CATATG 2 cut(s) 260, 916
NdeII GATC 8 cut(s) 66, 397, 503, 603, 739, 752, 814, 941
NlaIII CATG 6 cut(s) 379, 503, 653, 871, 908, 1006
NlaIV GGNNCC 5 cut(s) 222, 284, 410, 865, 1044
NmuCI GTSAC 2 cut(s) 91, 985
PciSI GCTCTTC 1 cut(s) 123
PctI GAATGC 1 cut(s) 937
PfeI GAWTC 1 cut(s) 473
PkrI GCNGC 9 cut(s) 29, 39, 42, 45, 48, 51, 74, 216, 305
PleI GAGTC 4 cut(s) 101, 370, 571, 1029
PluTI GGCGCC 1 cut(s) 412
PpsI GAGTC 4 cut(s) 101, 370, 571, 1029
PshAI GACNNNNGTC 2 cut(s) 617, 666
PspFI CCCAGC 1 cut(s) 635
PspN4I GGNNCC 5 cut(s) 222, 284, 410, 865, 1044
PspPI GGNCC 2 cut(s) 252, 282
PstI CTGCAG 1 cut(s) 45
PvuII CAGCTG 1 cut(s) 46
RsaI GTAC 2 cut(s) 332, 679
RsaNI GTAC 2 cut(s) 331, 678
RseI CAYNNNNRTG 1 cut(s) 374
SapI GCTCTTC 1 cut(s) 123
SaqAI TTAA 3 cut(s) 309, 1034, 1052
SatI GCNGC 9 cut(s) 28, 38, 41, 44, 47, 50, 73, 215, 304
Sau3AI GATC 8 cut(s) 66, 397, 503, 603, 739, 752, 814, 941
Sau96I GGNCC 2 cut(s) 252, 282
ScaI AGTACT 1 cut(s) 332
SchI GAGTC 4 cut(s) 101, 371, 571, 1030
ScrFI CCNGG 2 cut(s) 54, 286
SfaNI GCATC 1 cut(s) 108
SfcI CTRYAG 2 cut(s) 41, 703
SfoI GGCGCC 1 cut(s) 410
SgrAI CRCCGGYG 1 cut(s) 217
SinI GGWCC 1 cut(s) 282
SmiMI CAYNNNNRTG 1 cut(s) 374
SmlI CTYRAG 2 cut(s) 296, 579
SmoI CTYRAG 2 cut(s) 296, 579
Sse9I AATT 2 cut(s) 615, 654
SspDI GGCGCC 1 cut(s) 408
SspMI CTAG 2 cut(s) 686, 750
StyD4I CCNGG 2 cut(s) 52, 284
TaaI ACNGT 3 cut(s) 682, 779, 1050
TaqI TCGA 2 cut(s) 857, 894
TasI AATT 2 cut(s) 615, 654
TatI WGTACW 1 cut(s) 330
TauI GCSGC 3 cut(s) 40, 52, 217
TfiI GAWTC 1 cut(s) 473
Tru1I TTAA 3 cut(s) 309, 1034, 1052
Tru9I TTAA 3 cut(s) 309, 1034, 1052
TscAI CASTG 1 cut(s) 529
TseFI GTSAC 2 cut(s) 91, 985
TseI GCWGC 6 cut(s) 27, 40, 43, 46, 72, 303
Tsp45I GTSAC 2 cut(s) 91, 985
TspDTI ATGAA 5 cut(s) 341, 476, 564, 638, 871
TspGWI ACGGA 1 cut(s) 941
TspRI CASTG 1 cut(s) 529
VpaK11BI GGWCC 1 cut(s) 282
XagI CCTNNNNNAGG 1 cut(s) 753
XmiI GTMKAC 1 cut(s) 15
XspI CTAG 2 cut(s) 686, 750
ZrmI AGTACT 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.