Rh1CG175000

Metacaspase-1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000588
Physical Location & Seq
Reverse (-)
38559926 .. 38564854
4929 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG175000.1

Sequence Viewer

Length: 1053 bp
ATGATGACGAGCAATTATGGAGGCCAACGACTTCTAGTGGTCGACTGTTGCTATTGCCAGACCCAAATCCAGCTGCCTTCTGTGAGTCCGATATACATCGTCGGCACATCTGTCCGCTGCGGCCGCTGCTATGCCAGTACCCGCGTCGCCTCTCCGGGCTTCCCCCGCTCCCCCCATAGTGCCGTACCCTACTATGCCCTTATAAACCCACCACCACATGCCTGCTTCCCCCATACATCACCAGGACCTCCGCCGAACGTGCATGGGCGGAAGAAGGCGGTGATCTGCGGGATATCGTATAGAAACTCGAGGGATGAGCTCAATTGTTGCATCAATGACGCCAAATGCATGCGGTATCTCCTCATCACCAAGTTCAAGTTTCCAGAAGATTCCATTCTCATGCTCACTGAAGAAGAAACTCACCCACATAAGATTCCATATAAAAACAACATTAGAAGGGCATTATGTTGGCTTGTACAAGGATGTCAATCGGGGGACTCCCTTCTGTTTTACTTCTCCGGTCATGGTTCACGGCAGAGGAATTATGATGGTGATGAAGTTGATGGATATGATGAAACCCTTTGTCCCCTTGACTTTGAAACCCAGGGTATGATTGTTGATGATGAGATAAATGCAGCAATTGTTAGGCCCATTCCACATGGGGTCAAGCTTCATGCAATTATAGATTCTTGTCATAGTGGCACCATACTGGATTTGCCATGCCTTTGCAGAATGGACAGGGGTGGAAAATATGTATGGGAGGATCATCGACCTCCATCAGGCGTATGGAAAGGAACAAGTGGTGGACAAGTTATATCTATCAGCGGTTGTGATGACCATCAAACCTCTGCAGAGACATCAATGCGTAAGGAGCACAAAGTTGACGGTGAGCTTAGTGGGGATCGAGGATGGGGTGGGGGTCCTTCAGGGCTTCATGAAGGTCAAAGGAGTCTTGATGTGAGGGACGACCTTATTCCAGGCCTCGTTGAAAGCAGGGTTGCCTACGGGAGTTTCGGTGACATCGGTGGAGAAGGCTCGGGCTGCCCAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C14 zf-LSD1

Protein Analysis

350

Amino Acids

38.39

Weight (kDa)

6.05

Isoelectric Point (pI)

44.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C14 PF00656 90 - 287 9.2e-26 Caspase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000588)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02170
fragaria_vesca FvH4_7g08970 FvH4_7g08970 FvH4_7g08970 FvH4_7g26490
malus_domestica MD01G1173500.v1.1 MD02G1221900.v1.1 MD05G1044000.v1.1 MD07G1094600.v1.1 MD07G1240400.v1.1 MD07G1240500.v1.1 MD10G1051100.v1.1 MD10G1051200.v1.1
prunus_persica Prupe.2G118900_v2.0.a1 Prupe.2G269200_v2.0.a1 Prupe.8G059400_v2.0.a1
pyrus_communis pycom01g18530 pycom01g18540 pycom02g18780 pycom05g03650 pycom07g07790 pycom07g21680 pycom10g03590
rosa_chinensis RchiOBHm_Chr1g0344331 RchiOBHm_Chr1g0344461 RchiOBHm_Chr1g0344571 RchiOBHm_Chr1g0344661 RchiOBHm_Chr1g0344751 RchiOBHm_Chr1g0344811 RchiOBHm_Chr1g0344881 RchiOBHm_Chr1g0344901 RchiOBHm_Chr1g0344911 RchiOBHm_Chr1g0373091
rosa_laevigata RLG00000028867 RLG00000028877 RLG00000028880 RLG00000028885 RLG00000028898
rosa_multiflora Rmu_co8105290.1_g000001 Rmu_co8220756.1_g000001 Rmu_co8317965.1_g000001 Rmu_co8413861.1_g000001 Rmu_co8518347.1_g000001 Rmu_sc0000390.1_g000001 Rmu_sc0005177.1_g000002 Rmu_sc0007317.1_g000002 Rmu_sc0010876.1_g000003 Rmu_sc0013714.1_g000001 Rmu_sc0029558.1_g000002 Rmu_ssc0000167.1_g000004
rosa_roxburghii Rroxscaffold_4G00284470 Rroxscaffold_4G00309530 Rroxscaffold_4G00309580 Rroxscaffold_4G00309590 Rroxscaffold_4G00309620 Rroxscaffold_4G00309630 Rroxscaffold_4G00309720 Rroxscaffold_4G00309880
rosa_rugosa Rorug01G0173200 Rorug01G0173200 Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug01G0174900 Rorug01G0376100
rosa_samantha Rh1CG175000 Rh1CG176200 Rh1CG177200 Rh1CG177800 Rh1CG177900 Rh1CG178000 Rh1CG361900 Rh1DG188500 Rh1DG188700 Rh1DG189400 Rh1DG379400
rosa_wichuraiana Rw1G015680 Rw1G015800 Rw1G015810 Rw1G015870 Rw1G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 203
AccB1I GGYRCC 1 cut(s) 701
AccBSI CCGCTC 1 cut(s) 168
AccI GTMKAC 1 cut(s) 42
AccII CGCG 1 cut(s) 144
AclWI GGATC 2 cut(s) 771, 909
AcoI YGGCCR 1 cut(s) 121
AcuI CTGAAG 2 cut(s) 429, 909
AcyI GRCGYC 1 cut(s) 339
AfaI GTAC 3 cut(s) 139, 186, 477
AfiI CCNNNNNNNGG 1 cut(s) 779
AgsI TTSAA 3 cut(s) 376, 599, 989
AjnI CCWGG 3 cut(s) 241, 603, 976
AluBI AGCT 4 cut(s) 73, 319, 670, 892
AluI AGCT 4 cut(s) 73, 319, 670, 892
Alw21I GWGCWC 2 cut(s) 321, 876
Alw26I GTCTC 1 cut(s) 848
AlwI GGATC 2 cut(s) 771, 909
Ama87I CYCGRG 2 cut(s) 307, 1036
AoxI GGCC 4 cut(s) 22, 121, 647, 979
ApeKI GCWGC 5 cut(s) 73, 117, 126, 635, 1041
AspS9I GGNCC 3 cut(s) 245, 648, 920
AsuC2I CCSGG 1 cut(s) 156
AsuHPI GGTGA 7 cut(s) 231, 292, 358, 413, 563, 899, 1028
AvaI CYCGRG 2 cut(s) 307, 1036
AvaII GGWCC 2 cut(s) 245, 920
BanI GGYRCC 1 cut(s) 701
BanII GRGCYC 1 cut(s) 321
Bbv12I GWGCWC 2 cut(s) 321, 876
BbvI GCAGC 5 cut(s) 60, 104, 113, 647, 1028
BccI CCATC 5 cut(s) 542, 557, 784, 846, 903
BceAI ACGGC 2 cut(s) 167, 548
BciT130I CCWGG 3 cut(s) 243, 605, 978
BcnI CCSGG 1 cut(s) 156
BcoDI GTCTC 1 cut(s) 848
BfaI CTAG 1 cut(s) 35
BfmI CTRYAG 1 cut(s) 849
BisI GCNGC 7 cut(s) 74, 118, 121, 124, 127, 636, 1042
BlsI GCNGC 7 cut(s) 75, 119, 122, 125, 128, 637, 1043
Bme1390I CCNGG 4 cut(s) 156, 243, 605, 978
Bme18I GGWCC 2 cut(s) 245, 920
BmeT110I CYCGRG 2 cut(s) 307, 1036
BmgT120I GGNCC 3 cut(s) 245, 648, 920
BmiI GGNNCC 2 cut(s) 703, 921
BmrFI CCNGG 4 cut(s) 156, 243, 605, 978
BmsI GCATC 1 cut(s) 339
BpuMI CCSGG 1 cut(s) 156
BsaBI GATNNNNATC 3 cut(s) 95, 487, 837
BsaHI GRCGYC 1 cut(s) 339
BsaJI CCNNGG 2 cut(s) 603, 604
BsaWI WCCGGW 1 cut(s) 518
BsaXI ACNNNNNCTCC 2 cut(s) 1000, 1030
Bsc4I CCNNNNNNNGG 1 cut(s) 779
Bse1I ACTGG 2 cut(s) 135, 714
Bse8I GATNNNNATC 3 cut(s) 95, 487, 837
BseBI CCWGG 3 cut(s) 243, 605, 978
BseDI CCNNGG 2 cut(s) 603, 604
BseGI GGATG 3 cut(s) 319, 488, 914
BseJI GATNNNNATC 3 cut(s) 95, 487, 837
BseLI CCNNNNNNNGG 1 cut(s) 779
BseNI ACTGG 2 cut(s) 135, 714
BseRI GAGGAG 1 cut(s) 350
BseX3I CGGCCG 1 cut(s) 121
BseXI GCAGC 5 cut(s) 60, 104, 113, 647, 1028
Bsh1236I CGCG 1 cut(s) 144
Bsh1285I CGRYCG 1 cut(s) 124
BshFI GGCC 4 cut(s) 24, 123, 649, 981
BshNI GGYRCC 1 cut(s) 701
BsiEI CGRYCG 1 cut(s) 124
BsiHKAI GWGCWC 2 cut(s) 321, 876
BsiHKCI CYCGRG 2 cut(s) 307, 1036
BsiSI CCGG 2 cut(s) 155, 519
BslFI GGGAC 3 cut(s) 509, 570, 977
BslI CCNNNNNNNGG 1 cut(s) 779
BsmAI GTCTC 1 cut(s) 848
BsmFI GGGAC 3 cut(s) 509, 570, 977
BsnI GGCC 4 cut(s) 24, 123, 649, 981
BsoBI CYCGRG 2 cut(s) 307, 1036
Bsp1286I GDGCHC 2 cut(s) 321, 876
Bsp1407I TGTACA 1 cut(s) 475
Bsp143I GATC 3 cut(s) 282, 763, 901
BspANI GGCC 4 cut(s) 24, 123, 649, 981
BspFNI CGCG 1 cut(s) 144
BspHI TCATGA 1 cut(s) 934
BspLI GGNNCC 2 cut(s) 703, 921
BspMAI CTGCAG 1 cut(s) 853
BspPI GGATC 2 cut(s) 771, 909
BspT107I GGYRCC 1 cut(s) 701
BsrBI CCGCTC 1 cut(s) 168
BsrGI TGTACA 1 cut(s) 475
BsrI ACTGG 2 cut(s) 135, 714
BssECI CCNNGG 2 cut(s) 603, 604
BssMI GATC 3 cut(s) 282, 763, 901
BssNI GRCGYC 1 cut(s) 339
Bst2UI CCWGG 3 cut(s) 243, 605, 978
Bst4CI ACNGT 2 cut(s) 47, 887
BstACI GRCGYC 1 cut(s) 339
BstAUI TGTACA 1 cut(s) 475
BstC8I GCNNGC 2 cut(s) 223, 350
BstDEI CTNAG 1 cut(s) 893
BstENI CCTNNNNNAGG 1 cut(s) 777
BstF5I GGATG 3 cut(s) 319, 488, 914
BstFNI CGCG 1 cut(s) 144
BstKTI GATC 3 cut(s) 285, 766, 904
BstMAI GTCTC 1 cut(s) 848
BstMBI GATC 3 cut(s) 282, 763, 901
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 6 cut(s) 123, 126, 165, 259, 871, 1041
BstNI CCWGG 3 cut(s) 243, 605, 978
BstNSI RCATGY 2 cut(s) 221, 352
BstSCI CCNGG 4 cut(s) 154, 241, 603, 976
BstSFI CTRYAG 1 cut(s) 849
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 5 cut(s) 60, 104, 113, 647, 1028
BstZI CGGCCG 1 cut(s) 121
BsuRI GGCC 4 cut(s) 24, 123, 649, 981
BtsCI GGATG 3 cut(s) 319, 488, 914
BtsIMutI CAGTG 1 cut(s) 405
Cac8I GCNNGC 2 cut(s) 223, 350
CciI TCATGA 1 cut(s) 934
CciNI GCGGCCGC 1 cut(s) 121
Cfr13I GGNCC 3 cut(s) 245, 648, 920
CseI GACGC 2 cut(s) 133, 347
Csp6I GTAC 3 cut(s) 138, 185, 476
CviAII CATG 9 cut(s) 218, 263, 349, 400, 524, 659, 674, 720, 935
CviQI GTAC 3 cut(s) 138, 185, 476
DdeI CTNAG 1 cut(s) 893
DpnI GATC 3 cut(s) 284, 765, 903
DpnII GATC 3 cut(s) 282, 763, 901
EaeI YGGCCR 1 cut(s) 121
EagI CGGCCG 1 cut(s) 121
EciI GGCGGA 2 cut(s) 240, 283
Ecl136II GAGCTC 1 cut(s) 319
EclXI CGGCCG 1 cut(s) 121
Eco147I AGGCCT 1 cut(s) 981
Eco24I GRGCYC 1 cut(s) 321
Eco32I GATATC 1 cut(s) 294
Eco47I GGWCC 2 cut(s) 245, 920
Eco52I CGGCCG 1 cut(s) 121
Eco53kI GAGCTC 1 cut(s) 319
Eco57I CTGAAG 2 cut(s) 429, 909
Eco88I CYCGRG 2 cut(s) 307, 1036
EcoICRI GAGCTC 1 cut(s) 319
EcoNI CCTNNNNNAGG 1 cut(s) 777
EcoO109I RGGNCCY 2 cut(s) 245, 920
EcoRII CCWGG 3 cut(s) 241, 603, 976
EcoRV GATATC 1 cut(s) 294
EcoT22I ATGCAT 1 cut(s) 350
EcoT38I GRGCYC 1 cut(s) 321
FaeI CATG 9 cut(s) 221, 266, 352, 403, 527, 662, 677, 723, 938
FaqI GGGAC 3 cut(s) 509, 570, 977
FatI CATG 9 cut(s) 217, 262, 348, 399, 523, 658, 673, 719, 934
FauI CCCGC 3 cut(s) 149, 173, 281
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 7 cut(s) 74, 118, 121, 124, 127, 636, 1042
FokI GGATG 3 cut(s) 326, 495, 921
FriOI GRGCYC 1 cut(s) 321
Fsp4HI GCNGC 7 cut(s) 74, 118, 121, 124, 127, 636, 1042
FspBI CTAG 1 cut(s) 35
GluI GCNGC 7 cut(s) 74, 118, 121, 124, 127, 636, 1042
HaeIII GGCC 4 cut(s) 24, 123, 649, 981
HapII CCGG 2 cut(s) 155, 519
HgaI GACGC 2 cut(s) 133, 347
Hin1I GRCGYC 1 cut(s) 339
Hin1II CATG 9 cut(s) 221, 266, 352, 403, 527, 662, 677, 723, 938
HincII GTYRAC 2 cut(s) 43, 883
HindII GTYRAC 2 cut(s) 43, 883
HindIII AAGCTT 1 cut(s) 668
HinfI GANTC 6 cut(s) 85, 389, 433, 497, 686, 949
HpaII CCGG 2 cut(s) 155, 519
HphI GGTGA 7 cut(s) 231, 292, 358, 413, 563, 899, 1028
Hpy166II GTNNAC 4 cut(s) 43, 530, 806, 883
Hpy188I TCNGA 1 cut(s) 90
Hpy188III TCNNGA 3 cut(s) 383, 935, 953
Hpy8I GTNNAC 4 cut(s) 43, 530, 806, 883
Hpy99I CGWCG 2 cut(s) 104, 149
HpyAV CCTTC 7 cut(s) 87, 268, 450, 512, 932, 933, 1025
HpyCH4III ACNGT 2 cut(s) 47, 887
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 7 cut(s) 262, 330, 348, 635, 677, 729, 851
HpyF10VI GCNNNNNNNGC 6 cut(s) 123, 126, 165, 259, 871, 1041
HpyF3I CTNAG 1 cut(s) 893
HpySE526I ACGT 1 cut(s) 258
Hsp92I GRCGYC 1 cut(s) 339
Hsp92II CATG 9 cut(s) 221, 266, 352, 403, 527, 662, 677, 723, 938
Kzo9I GATC 3 cut(s) 282, 763, 901
LmnI GCTCC 2 cut(s) 173, 871
Lsp1109I GCAGC 5 cut(s) 60, 104, 113, 647, 1028
LweI GCATC 1 cut(s) 339
MaeI CTAG 1 cut(s) 35
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 1 cut(s) 1016
MalI GATC 3 cut(s) 284, 765, 903
MbiI CCGCTC 1 cut(s) 168
MboI GATC 3 cut(s) 282, 763, 901
MboII GAAGA 4 cut(s) 283, 398, 422, 425
MfeI CAATTG 2 cut(s) 322, 639
MhlI GDGCHC 2 cut(s) 321, 876
MluCI AATT 5 cut(s) 13, 322, 541, 639, 678
MlyI GAGTC 3 cut(s) 94, 491, 958
Mph1103I ATGCAT 1 cut(s) 350
MslI CAYNNNNRTG 1 cut(s) 398
MspA1I CMGCKG 4 cut(s) 73, 117, 126, 825
MspI CCGG 2 cut(s) 155, 519
MspR9I CCNGG 4 cut(s) 156, 243, 605, 978
MunI CAATTG 2 cut(s) 322, 639
MvaI CCWGG 3 cut(s) 243, 605, 978
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 6 cut(s) 123, 126, 165, 259, 871, 1041
NciI CCSGG 1 cut(s) 156
NdeII GATC 3 cut(s) 282, 763, 901
NlaIII CATG 9 cut(s) 221, 266, 352, 403, 527, 662, 677, 723, 938
NlaIV GGNNCC 2 cut(s) 703, 921
NmuCI GTSAC 1 cut(s) 1016
NotI GCGGCCGC 1 cut(s) 121
NsiI ATGCAT 1 cut(s) 350
NspI RCATGY 2 cut(s) 221, 352
PaeI GCATGC 1 cut(s) 352
PaeR7I CTCGAG 1 cut(s) 307
PagI TCATGA 1 cut(s) 934
PasI CCCWGGG 1 cut(s) 604
PceI AGGCCT 1 cut(s) 981
PfeI GAWTC 3 cut(s) 389, 433, 686
PkrI GCNGC 7 cut(s) 75, 119, 122, 125, 128, 637, 1043
PleI GAGTC 3 cut(s) 93, 491, 957
PpsI GAGTC 3 cut(s) 93, 491, 957
PpuMI RGGWCCY 2 cut(s) 245, 920
PsiI TTATAA 1 cut(s) 203
Psp124BI GAGCTC 1 cut(s) 321
Psp5II RGGWCCY 2 cut(s) 245, 920
Psp6I CCWGG 3 cut(s) 241, 603, 976
PspGI CCWGG 3 cut(s) 241, 603, 976
PspN4I GGNNCC 2 cut(s) 703, 921
PspPI GGNCC 3 cut(s) 245, 648, 920
PspPPI RGGWCCY 2 cut(s) 245, 920
PspXI VCTCGAGB 1 cut(s) 307
PstI CTGCAG 1 cut(s) 853
PvuII CAGCTG 1 cut(s) 73
RsaI GTAC 3 cut(s) 139, 186, 477
RsaNI GTAC 3 cut(s) 138, 185, 476
RseI CAYNNNNRTG 1 cut(s) 398
SacI GAGCTC 1 cut(s) 321
SalI GTCGAC 1 cut(s) 41
SatI GCNGC 7 cut(s) 74, 118, 121, 124, 127, 636, 1042
Sau3AI GATC 3 cut(s) 282, 763, 901
Sau96I GGNCC 3 cut(s) 245, 648, 920
SchI GAGTC 3 cut(s) 94, 491, 958
ScrFI CCNGG 4 cut(s) 156, 243, 605, 978
SduI GDGCHC 2 cut(s) 321, 876
SfaNI GCATC 1 cut(s) 339
SfcI CTRYAG 1 cut(s) 849
Sfr274I CTCGAG 1 cut(s) 307
SinI GGWCC 2 cut(s) 245, 920
SlaI CTCGAG 1 cut(s) 307
SmiMI CAYNNNNRTG 1 cut(s) 398
SmlI CTYRAG 1 cut(s) 307
SmoI CTYRAG 1 cut(s) 307
SphI GCATGC 1 cut(s) 352
Sse9I AATT 5 cut(s) 13, 322, 541, 639, 678
SseBI AGGCCT 1 cut(s) 981
SspMI CTAG 1 cut(s) 35
SstI GAGCTC 1 cut(s) 321
StuI AGGCCT 1 cut(s) 981
StyD4I CCNGG 4 cut(s) 154, 241, 603, 976
TaaI ACNGT 2 cut(s) 47, 887
TaiI ACGT 1 cut(s) 261
TaqI TCGA 4 cut(s) 42, 308, 769, 904
TasI AATT 5 cut(s) 13, 322, 541, 639, 678
TatI WGTACW 1 cut(s) 475
TauI GCSGC 2 cut(s) 123, 126
TfiI GAWTC 3 cut(s) 389, 433, 686
TscAI CASTG 1 cut(s) 412
TseFI GTSAC 1 cut(s) 1016
TseI GCWGC 5 cut(s) 73, 117, 126, 635, 1041
Tsp45I GTSAC 1 cut(s) 1016
TspDTI ATGAA 5 cut(s) 570, 588, 662, 923, 951
TspRI CASTG 1 cut(s) 412
VpaK11BI GGWCC 2 cut(s) 245, 920
XagI CCTNNNNNAGG 1 cut(s) 777
XceI RCATGY 2 cut(s) 221, 352
XcmI CCANNNNNNNNNTGG 1 cut(s) 783
XhoI CTCGAG 1 cut(s) 307
XmiI GTMKAC 1 cut(s) 42
XspI CTAG 1 cut(s) 35
Zsp2I ATGCAT 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.