Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000588

Physical Location & Seq

Genomic Coordinates Reverse (-)

37728372 .. 37734690

Gene Structure 6319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG188500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCATTACATTGGCTTGTACAAGGATGCCAACCAGGTGACTCCCTTGTGTTTCACTACTCTGGTCATGGTTCACGGCAGAGGGCTTATCATGAGGATGAAGTTGATGGATATGATGAAACCCTTTGTCCCCTTGACTTCGAAACCCAGGGTATGATTGTCGATGATGAGATAAATGCAATAATTGTTAGGCCCCTTCCACATGGGGTCAAGCTTCATGCAATTATAGACTCCTGTCATAGTGGCACTGTACTGGATTTGCCATTCCTTTGCAGAATGGACAGGGGTGGAAAATATGTATGGGAGGATCATCGCCCTCGATCAGGCATGTGGAAAGGAACAAGTGGTGGAGAAGTTATATCTATCAGTGGTTGTGATGACGATCAAACCTCTGCTGATACATCAGCTCTATCCAAGATCACATCAACCGGTGCCATGACTTTGTGCTTCATCCAAGCAATCGAGCGTGGACAGGCAGCCACATATGGGAGCATACTCAATTCTATGCGTAATACCATTCGAATCTTAACAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0010941 GO:0010942 GO:0016787 GO:0019538 GO:0043067 GO:0043068 GO:0043170 GO:0044238 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MORN Peptidase_C14 zf-LSD1

Protein Analysis

178

Amino Acids

19.59

Weight (kDa)

5.36

Isoelectric Point (pI)

30.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C14	PF00656	2 - 173	6e-22	Caspase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000588)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02170
fragaria_vesca	FvH4_7g08970 FvH4_7g08970 FvH4_7g08970 FvH4_7g26490
malus_domestica	MD01G1173500.v1.1 MD02G1221900.v1.1 MD05G1044000.v1.1 MD07G1094600.v1.1 MD07G1240400.v1.1 MD07G1240500.v1.1 MD10G1051100.v1.1 MD10G1051200.v1.1
prunus_persica	Prupe.2G118900_v2.0.a1 Prupe.2G269200_v2.0.a1 Prupe.8G059400_v2.0.a1
pyrus_communis	pycom01g18530 pycom01g18540 pycom02g18780 pycom05g03650 pycom07g07790 pycom07g21680 pycom10g03590
rosa_chinensis	RchiOBHm_Chr1g0344331 RchiOBHm_Chr1g0344461 RchiOBHm_Chr1g0344571 RchiOBHm_Chr1g0344661 RchiOBHm_Chr1g0344751 RchiOBHm_Chr1g0344811 RchiOBHm_Chr1g0344881 RchiOBHm_Chr1g0344901 RchiOBHm_Chr1g0344911 RchiOBHm_Chr1g0373091
rosa_laevigata	RLG00000028867 RLG00000028877 RLG00000028880 RLG00000028885 RLG00000028898
rosa_multiflora	Rmu_co8105290.1_g000001 Rmu_co8220756.1_g000001 Rmu_co8317965.1_g000001 Rmu_co8413861.1_g000001 Rmu_co8518347.1_g000001 Rmu_sc0000390.1_g000001 Rmu_sc0005177.1_g000002 Rmu_sc0007317.1_g000002 Rmu_sc0010876.1_g000003 Rmu_sc0013714.1_g000001 Rmu_sc0029558.1_g000002 Rmu_ssc0000167.1_g000004
rosa_roxburghii	Rroxscaffold_4G00284470 Rroxscaffold_4G00309530 Rroxscaffold_4G00309580 Rroxscaffold_4G00309590 Rroxscaffold_4G00309620 Rroxscaffold_4G00309630 Rroxscaffold_4G00309720 Rroxscaffold_4G00309880
rosa_rugosa	Rorug01G0173200 Rorug01G0173200 Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug01G0174900 Rorug01G0376100
rosa_samantha	Rh1CG175000 Rh1CG176200 Rh1CG177200 Rh1CG177800 Rh1CG177900 Rh1CG178000 Rh1CG361900 Rh1DG188500 Rh1DG188700 Rh1DG189400 Rh1DG379400
rosa_wichuraiana	Rw1G015680 Rw1G015800 Rw1G015810 Rw1G015870 Rw1G033900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	431
AclWI	GGATC	1 cut(s)	315
AfaI	GTAC	2 cut(s)	21, 252
AfiI	CCNNNNNNNGG	2 cut(s)	323, 486
AgeI	ACCGGT	1 cut(s)	428
AjnI	CCWGG	2 cut(s)	34, 147
AluBI	AGCT	2 cut(s)	214, 407
AluI	AGCT	2 cut(s)	214, 407
AlwI	GGATC	1 cut(s)	315
AoxI	GGCC	1 cut(s)	191
ApeKI	GCWGC	1 cut(s)	476
AsiGI	ACCGGT	1 cut(s)	428
AspS9I	GGNCC	1 cut(s)	192
AsuHPI	GGTGA	1 cut(s)	50
AsuII	TTCGAA	2 cut(s)	141, 520
BanI	GGYRCC	1 cut(s)	431
BbvI	GCAGC	1 cut(s)	488
BccI	CCATC	1 cut(s)	101
BceAI	ACGGC	1 cut(s)	92
BciT130I	CCWGG	2 cut(s)	36, 149
BisI	GCNGC	1 cut(s)	477
BlsI	GCNGC	1 cut(s)	478
Bme1390I	CCNGG	2 cut(s)	36, 149
BmgT120I	GGNCC	1 cut(s)	192
BmiI	GGNNCC	2 cut(s)	194, 433
BmrFI	CCNGG	2 cut(s)	36, 149
BmsI	GCATC	1 cut(s)	17
BoxI	GACNNNNGTC	1 cut(s)	234
Bpu14I	TTCGAA	2 cut(s)	141, 520
BsaBI	GATNNNNATC	1 cut(s)	381
BsaJI	CCNNGG	2 cut(s)	147, 148
BsaWI	WCCGGW	1 cut(s)	428
Bsc4I	CCNNNNNNNGG	2 cut(s)	323, 486
Bse118I	RCCGGY	1 cut(s)	428
Bse1I	ACTGG	1 cut(s)	258
Bse8I	GATNNNNATC	1 cut(s)	381
BseBI	CCWGG	2 cut(s)	36, 149
BseDI	CCNNGG	2 cut(s)	147, 148
BseGI	GGATG	3 cut(s)	32, 103, 450
BseJI	GATNNNNATC	1 cut(s)	381
BseLI	CCNNNNNNNGG	2 cut(s)	323, 486
BseNI	ACTGG	1 cut(s)	258
BseXI	GCAGC	1 cut(s)	488
BshFI	GGCC	1 cut(s)	193
BshNI	GGYRCC	1 cut(s)	431
BshTI	ACCGGT	1 cut(s)	428
BsiSI	CCGG	1 cut(s)	429
BslFI	GGGAC	1 cut(s)	114
BslI	CCNNNNNNNGG	2 cut(s)	323, 486
BsmFI	GGGAC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	193
Bsp119I	TTCGAA	2 cut(s)	141, 520
Bsp1407I	TGTACA	1 cut(s)	19
Bsp143I	GATC	4 cut(s)	307, 320, 382, 417
BspANI	GGCC	1 cut(s)	193
BspHI	TCATGA	1 cut(s)	91
BspLI	GGNNCC	2 cut(s)	194, 433
BspPI	GGATC	1 cut(s)	315
BspT104I	TTCGAA	2 cut(s)	141, 520
BspT107I	GGYRCC	1 cut(s)	431
BsrFI	RCCGGY	1 cut(s)	428
BsrGI	TGTACA	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	258
BssAI	RCCGGY	1 cut(s)	428
BssECI	CCNNGG	2 cut(s)	147, 148
BssMI	GATC	4 cut(s)	307, 320, 382, 417
Bst2UI	CCWGG	2 cut(s)	36, 149
Bst4CI	ACNGT	1 cut(s)	250
BstAUI	TGTACA	1 cut(s)	19
BstBI	TTCGAA	2 cut(s)	141, 520
BstENI	CCTNNNNNAGG	1 cut(s)	321
BstF5I	GGATG	3 cut(s)	32, 103, 450
BstKTI	GATC	4 cut(s)	310, 323, 385, 420
BstMBI	GATC	4 cut(s)	307, 320, 382, 417
BstNI	CCWGG	2 cut(s)	36, 149
BstNSI	RCATGY	1 cut(s)	331
BstPAI	GACNNNNGTC	1 cut(s)	234
BstSCI	CCNGG	2 cut(s)	34, 147
BstV1I	GCAGC	1 cut(s)	488
BsuRI	GGCC	1 cut(s)	193
BtgZI	GCGATG	1 cut(s)	296
BtsCI	GGATG	3 cut(s)	32, 103, 450
BtsIMutI	CAGTG	2 cut(s)	246, 373
CciI	TCATGA	1 cut(s)	91
Cfr10I	RCCGGY	1 cut(s)	428
Cfr13I	GGNCC	1 cut(s)	192
CsiI	ACCWGGT	1 cut(s)	34
Csp6I	GTAC	2 cut(s)	20, 251
CspAI	ACCGGT	1 cut(s)	428
CviAII	CATG	6 cut(s)	68, 92, 203, 218, 328, 436
CviJI	RGCY	6 cut(s)	16, 86, 193, 214, 407, 479
CviKI_1	RGCY	6 cut(s)	16, 86, 193, 214, 407, 479
CviQI	GTAC	2 cut(s)	20, 251
DpnI	GATC	4 cut(s)	309, 322, 384, 419
DpnII	GATC	4 cut(s)	307, 320, 382, 417
EcoNI	CCTNNNNNAGG	1 cut(s)	321
EcoO109I	RGGNCCY	1 cut(s)	192
EcoRII	CCWGG	2 cut(s)	34, 147
FaeI	CATG	6 cut(s)	71, 95, 206, 221, 331, 439
FaqI	GGGAC	1 cut(s)	114
FatI	CATG	6 cut(s)	67, 91, 202, 217, 327, 435
FauNDI	CATATG	1 cut(s)	484
Fnu4HI	GCNGC	1 cut(s)	477
FokI	GGATG	3 cut(s)	39, 110, 437
Fsp4HI	GCNGC	1 cut(s)	477
GluI	GCNGC	1 cut(s)	477
HaeIII	GGCC	1 cut(s)	193
HapII	CCGG	1 cut(s)	429
Hin1II	CATG	6 cut(s)	71, 95, 206, 221, 331, 439
HindIII	AAGCTT	1 cut(s)	212
HinfI	GANTC	3 cut(s)	41, 230, 522
HpaII	CCGG	1 cut(s)	429
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	2 cut(s)	74, 470
Hpy188III	TCNNGA	1 cut(s)	92
Hpy8I	GTNNAC	2 cut(s)	74, 470
HpyAV	CCTTC	1 cut(s)	206
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4V	TGCA	3 cut(s)	179, 221, 273
Hsp92II	CATG	6 cut(s)	71, 95, 206, 221, 331, 439
Kzo9I	GATC	4 cut(s)	307, 320, 382, 417
LmnI	GCTCC	1 cut(s)	489
Lsp1109I	GCAGC	1 cut(s)	488
LweI	GCATC	1 cut(s)	17
MabI	ACCWGGT	1 cut(s)	34
MaeIII	GTNAC	1 cut(s)	38
MalI	GATC	4 cut(s)	309, 322, 384, 419
MboI	GATC	4 cut(s)	307, 320, 382, 417
MluCI	AATT	3 cut(s)	183, 222, 499
MlyI	GAGTC	2 cut(s)	35, 224
MnlI	CCTC	5 cut(s)	75, 88, 298, 327, 400
MseI	TTAA	1 cut(s)	527
MslI	CAYNNNNRTG	1 cut(s)	96
MspI	CCGG	1 cut(s)	429
MspR9I	CCNGG	2 cut(s)	36, 149
MvaI	CCWGG	2 cut(s)	36, 149
NdeI	CATATG	1 cut(s)	484
NdeII	GATC	4 cut(s)	307, 320, 382, 417
NlaIII	CATG	6 cut(s)	71, 95, 206, 221, 331, 439
NlaIV	GGNNCC	2 cut(s)	194, 433
NmuCI	GTSAC	1 cut(s)	38
NspI	RCATGY	1 cut(s)	331
NspV	TTCGAA	2 cut(s)	141, 520
PagI	TCATGA	1 cut(s)	91
PasI	CCCWGGG	1 cut(s)	148
PfeI	GAWTC	1 cut(s)	522
PinAI	ACCGGT	1 cut(s)	428
PkrI	GCNGC	1 cut(s)	478
PleI	GAGTC	2 cut(s)	35, 224
PpsI	GAGTC	2 cut(s)	35, 224
PshAI	GACNNNNGTC	1 cut(s)	234
Psp6I	CCWGG	2 cut(s)	34, 147
PspGI	CCWGG	2 cut(s)	34, 147
PspN4I	GGNNCC	2 cut(s)	194, 433
PspPI	GGNCC	1 cut(s)	192
RsaI	GTAC	2 cut(s)	21, 252
RsaNI	GTAC	2 cut(s)	20, 251
RseI	CAYNNNNRTG	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	527
SatI	GCNGC	1 cut(s)	477
Sau3AI	GATC	4 cut(s)	307, 320, 382, 417
Sau96I	GGNCC	1 cut(s)	192
SchI	GAGTC	2 cut(s)	35, 224
ScrFI	CCNGG	2 cut(s)	36, 149
SetI	ASST	4 cut(s)	40, 216, 392, 409
SexAI	ACCWGGT	1 cut(s)	34
SfaNI	GCATC	1 cut(s)	17
SfuI	TTCGAA	2 cut(s)	141, 520
SmiMI	CAYNNNNRTG	1 cut(s)	96
Sse9I	AATT	3 cut(s)	183, 222, 499
StyD4I	CCNGG	2 cut(s)	34, 147
TaaI	ACNGT	1 cut(s)	250
TaqI	TCGA	5 cut(s)	141, 162, 319, 462, 520
TasI	AATT	3 cut(s)	183, 222, 499
TatI	WGTACW	2 cut(s)	19, 250
TfiI	GAWTC	1 cut(s)	522
Tru1I	TTAA	1 cut(s)	527
Tru9I	TTAA	1 cut(s)	527
TscAI	CASTG	2 cut(s)	253, 373
TseFI	GTSAC	1 cut(s)	38
TseI	GCWGC	1 cut(s)	476
Tsp45I	GTSAC	1 cut(s)	38
TspDTI	ATGAA	4 cut(s)	114, 132, 206, 439
TspRI	CASTG	2 cut(s)	253, 373
XagI	CCTNNNNNAGG	1 cut(s)	321
XceI	RCATGY	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.