Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0000588

Physical Location & Seq

Genomic Coordinates Reverse (-)

3898853 .. 3899731

Gene Structure 879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g03590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCATGTCGGAATGAGAGGTGCAATGGGTGTGGACCGCAATTTCTTGTGCCATCAGAAGCACAAATCATTCGTTGTGATTCGTGTCAAGGCATCACCCGCATTAGTAGACCATCCGTCAATCCTCTGATCCGAGCAGGCCAAGATACAATAAACCACGCTGTCAACCGTGTTCAAAGCCGAATGACTAGAGTGATGTCCAGGCCCTCCCCGAATACTGCCCGCCCTGCTAATCTTCAATACTACCAGCCATTTGTACCAAAACCCTTGATGCCTCCTTCGGCGTATGGAAGAAAGCGTGCGGTGCTCTGTGGAGTGAGTTACAATGGGAAAAGTTACAAGCTTAAAGGAACTGTGAACGATGTTCACTACATGAAATACTTTCTTGTTGACAGATTGGGTTTTCCAAATCATTCCGTACTCATGCTCACAGAACATGAGATGGACCCTTTTAGGATCCCAACAAAACAAAACATGCGAATGGCGTTACAGTGGTTGGTGCAGGGCTGCCAATCAGGAGACTCGTTGGTGTTCTACTTCTCCGGCCATGGCTCAACCCAGCGTGACTATTCGATGGATGAGATTGACGGCAATGATGAAACGTTGTGCCCTGTTGATTTTGAGACCGAGGGGATCGATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0010941 GO:0010942 GO:0016787 GO:0019538 GO:0043067 GO:0043068 GO:0043170 GO:0044238 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C14 zf-LSD1

Protein Analysis

215

Amino Acids

24.23

Weight (kDa)

8.63

Isoelectric Point (pI)

52.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C14	PF00656	98 - 212	4e-19	Caspase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000588)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02170
fragaria_vesca	FvH4_7g08970 FvH4_7g08970 FvH4_7g08970 FvH4_7g26490
malus_domestica	MD01G1173500.v1.1 MD02G1221900.v1.1 MD05G1044000.v1.1 MD07G1094600.v1.1 MD07G1240400.v1.1 MD07G1240500.v1.1 MD10G1051100.v1.1 MD10G1051200.v1.1
prunus_persica	Prupe.2G118900_v2.0.a1 Prupe.2G269200_v2.0.a1 Prupe.8G059400_v2.0.a1
pyrus_communis	pycom01g18530 pycom01g18540 pycom02g18780 pycom05g03650 pycom07g07790 pycom07g21680 pycom10g03590
rosa_chinensis	RchiOBHm_Chr1g0344331 RchiOBHm_Chr1g0344461 RchiOBHm_Chr1g0344571 RchiOBHm_Chr1g0344661 RchiOBHm_Chr1g0344751 RchiOBHm_Chr1g0344811 RchiOBHm_Chr1g0344881 RchiOBHm_Chr1g0344901 RchiOBHm_Chr1g0344911 RchiOBHm_Chr1g0373091
rosa_laevigata	RLG00000028867 RLG00000028877 RLG00000028880 RLG00000028885 RLG00000028898
rosa_multiflora	Rmu_co8105290.1_g000001 Rmu_co8220756.1_g000001 Rmu_co8317965.1_g000001 Rmu_co8413861.1_g000001 Rmu_co8518347.1_g000001 Rmu_sc0000390.1_g000001 Rmu_sc0005177.1_g000002 Rmu_sc0007317.1_g000002 Rmu_sc0010876.1_g000003 Rmu_sc0013714.1_g000001 Rmu_sc0029558.1_g000002 Rmu_ssc0000167.1_g000004
rosa_roxburghii	Rroxscaffold_4G00284470 Rroxscaffold_4G00309530 Rroxscaffold_4G00309580 Rroxscaffold_4G00309590 Rroxscaffold_4G00309620 Rroxscaffold_4G00309630 Rroxscaffold_4G00309720 Rroxscaffold_4G00309880
rosa_rugosa	Rorug01G0173200 Rorug01G0173200 Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug01G0174900 Rorug01G0376100
rosa_samantha	Rh1CG175000 Rh1CG176200 Rh1CG177200 Rh1CG177800 Rh1CG177900 Rh1CG178000 Rh1CG361900 Rh1DG188500 Rh1DG188700 Rh1DG189400 Rh1DG379400
rosa_wichuraiana	Rw1G015680 Rw1G015800 Rw1G015810 Rw1G015870 Rw1G033900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	109
AciI	CCGC	4 cut(s)	38, 100, 223, 302
AclI	AACGTT	1 cut(s)	602
AclWI	GGATC	4 cut(s)	124, 451, 464, 641
AcoI	YGGCCR	1 cut(s)	544
AfaI	GTAC	2 cut(s)	258, 420
AgsI	TTSAA	2 cut(s)	176, 239
AhdI	GACNNNNNGTC	1 cut(s)	116
AjnI	CCWGG	1 cut(s)	200
AluBI	AGCT	1 cut(s)	343
AluI	AGCT	1 cut(s)	343
Alw21I	GWGCWC	1 cut(s)	309
Alw26I	GTCTC	2 cut(s)	513, 617
AlwI	GGATC	4 cut(s)	124, 451, 464, 641
AoxI	GGCC	3 cut(s)	139, 203, 544
ApeKI	GCWGC	1 cut(s)	507
AspS9I	GGNCC	3 cut(s)	35, 204, 445
AsuHPI	GGTGA	1 cut(s)	88
AvaII	GGWCC	2 cut(s)	35, 445
BaeGI	GKGCMC	1 cut(s)	611
BamHI	GGATCC	1 cut(s)	456
Bbv12I	GWGCWC	1 cut(s)	309
BbvI	GCAGC	1 cut(s)	494
BccI	CCATC	4 cut(s)	61, 121, 436, 568
BceAI	ACGGC	1 cut(s)	604
BciT130I	CCWGG	1 cut(s)	202
BcoDI	GTCTC	2 cut(s)	513, 617
BfaI	CTAG	1 cut(s)	189
BisI	GCNGC	1 cut(s)	508
BlsI	GCNGC	1 cut(s)	509
Bme1390I	CCNGG	1 cut(s)	202
Bme18I	GGWCC	2 cut(s)	35, 445
BmeRI	GACNNNNNGTC	1 cut(s)	116
BmgT120I	GGNCC	3 cut(s)	35, 204, 445
BmiI	GGNNCC	2 cut(s)	447, 458
BmrFI	CCNGG	1 cut(s)	202
BmsI	GCATC	2 cut(s)	102, 261
Bsa29I	ATCGAT	1 cut(s)	636
BsaI	GGTCTC	1 cut(s)	617
BsaJI	CCNNGG	2 cut(s)	547, 627
Bse3DI	GCAATG	2 cut(s)	31, 598
BseBI	CCWGG	1 cut(s)	202
BseCI	ATCGAT	1 cut(s)	636
BseDI	CCNNGG	2 cut(s)	547, 627
BseGI	GGATG	2 cut(s)	113, 583
BseMI	GCAATG	2 cut(s)	31, 598
BseSI	GKGCMC	1 cut(s)	611
BseXI	GCAGC	1 cut(s)	494
BseYI	CCCAGC	1 cut(s)	558
BsgI	GTGCAG	1 cut(s)	521
BshFI	GGCC	3 cut(s)	141, 205, 546
BshVI	ATCGAT	1 cut(s)	636
BsiHKAI	GWGCWC	1 cut(s)	309
BsiSI	CCGG	1 cut(s)	543
BsmAI	GTCTC	2 cut(s)	513, 617
BsnI	GGCC	3 cut(s)	141, 205, 546
Bso31I	GGTCTC	1 cut(s)	617
Bsp1286I	GDGCHC	2 cut(s)	309, 611
Bsp143I	GATC	4 cut(s)	129, 456, 633, 637
Bsp19I	CCATGG	1 cut(s)	547
BspACI	CCGC	4 cut(s)	38, 100, 223, 302
BspANI	GGCC	3 cut(s)	141, 205, 546
BspDI	ATCGAT	1 cut(s)	636
BspLI	GGNNCC	2 cut(s)	447, 458
BspPI	GGATC	4 cut(s)	124, 451, 464, 641
BspTNI	GGTCTC	1 cut(s)	617
BsrDI	GCAATG	2 cut(s)	31, 598
BssECI	CCNNGG	2 cut(s)	547, 627
BssMI	GATC	4 cut(s)	129, 456, 633, 637
BssT1I	CCWWGG	1 cut(s)	547
Bst2UI	CCWGG	1 cut(s)	202
Bst4CI	ACNGT	3 cut(s)	170, 355, 492
BstC8I	GCNNGC	3 cut(s)	139, 223, 300
BstDSI	CCRYGG	1 cut(s)	547
BstF5I	GGATG	2 cut(s)	113, 583
BstKTI	GATC	4 cut(s)	132, 459, 636, 640
BstMAI	GTCTC	2 cut(s)	513, 617
BstMBI	GATC	4 cut(s)	129, 456, 633, 637
BstMWI	GCNNNNNNNGC	3 cut(s)	99, 227, 304
BstNI	CCWGG	1 cut(s)	202
BstNSI	RCATGY	2 cut(s)	9, 478
BstSCI	CCNGG	1 cut(s)	200
BstSLI	GKGCMC	1 cut(s)	611
BstV1I	GCAGC	1 cut(s)	494
BstX2I	RGATCY	1 cut(s)	456
BstYI	RGATCY	1 cut(s)	456
Bsu15I	ATCGAT	1 cut(s)	636
BsuRI	GGCC	3 cut(s)	141, 205, 546
BsuTUI	ATCGAT	1 cut(s)	636
BtgI	CCRYGG	1 cut(s)	547
BtsCI	GGATG	2 cut(s)	113, 583
BtsIMutI	CAGTG	1 cut(s)	497
Cac8I	GCNNGC	3 cut(s)	139, 223, 300
Cfr13I	GGNCC	3 cut(s)	35, 204, 445
ClaI	ATCGAT	1 cut(s)	636
Csp6I	GTAC	2 cut(s)	257, 419
CspCI	CAANNNNNGTGG	2 cut(s)	13, 48
CviAII	CATG	6 cut(s)	6, 373, 424, 437, 475, 548
CviJI	RGCY	8 cut(s)	141, 180, 205, 250, 343, 507, 546, 552
CviKI_1	RGCY	8 cut(s)	141, 180, 205, 250, 343, 507, 546, 552
CviQI	GTAC	2 cut(s)	257, 419
DpnI	GATC	4 cut(s)	131, 458, 635, 639
DpnII	GATC	4 cut(s)	129, 456, 633, 637
DriI	GACNNNNNGTC	1 cut(s)	116
EaeI	YGGCCR	1 cut(s)	544
Eam1105I	GACNNNNNGTC	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	547
Eco31I	GGTCTC	1 cut(s)	617
Eco47I	GGWCC	2 cut(s)	35, 445
EcoO109I	RGGNCCY	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	200
EcoT14I	CCWWGG	1 cut(s)	547
ErhI	CCWWGG	1 cut(s)	547
FaeI	CATG	6 cut(s)	9, 376, 427, 440, 478, 551
FaiI	YATR	7 cut(s)	7, 288, 374, 425, 438, 476, 549
FatI	CATG	6 cut(s)	5, 372, 423, 436, 474, 547
FauI	CCCGC	2 cut(s)	107, 230
FblI	GTMKAC	1 cut(s)	109
Fnu4HI	GCNGC	1 cut(s)	508
FokI	GGATG	2 cut(s)	100, 590
Fsp4HI	GCNGC	1 cut(s)	508
FspBI	CTAG	1 cut(s)	189
GluI	GCNGC	1 cut(s)	508
GsaI	CCCAGC	1 cut(s)	562
HaeIII	GGCC	3 cut(s)	141, 205, 546
HapII	CCGG	1 cut(s)	543
Hin1II	CATG	6 cut(s)	9, 376, 427, 440, 478, 551
HincII	GTYRAC	2 cut(s)	166, 391
HindII	GTYRAC	2 cut(s)	166, 391
HindIII	AAGCTT	1 cut(s)	341
HinfI	GANTC	2 cut(s)	80, 521
HpaII	CCGG	1 cut(s)	543
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	6 cut(s)	35, 110, 166, 358, 367, 391
Hpy188I	TCNGA	4 cut(s)	12, 58, 129, 134
Hpy188III	TCNNGA	1 cut(s)	516
Hpy8I	GTNNAC	6 cut(s)	35, 110, 166, 358, 367, 391
HpyAV	CCTTC	1 cut(s)	288
HpyCH4III	ACNGT	3 cut(s)	170, 355, 492
HpyCH4IV	ACGT	1 cut(s)	602
HpyCH4V	TGCA	2 cut(s)	24, 502
HpyF10VI	GCNNNNNNNGC	3 cut(s)	99, 227, 304
HpySE526I	ACGT	1 cut(s)	602
Hsp92II	CATG	6 cut(s)	9, 376, 427, 440, 478, 551
Kzo9I	GATC	4 cut(s)	129, 456, 633, 637
Lsp1109I	GCAGC	1 cut(s)	494
LweI	GCATC	2 cut(s)	102, 261
MaeI	CTAG	1 cut(s)	189
MaeII	ACGT	1 cut(s)	602
MaeIII	GTNAC	4 cut(s)	320, 335, 486, 563
MalI	GATC	4 cut(s)	131, 458, 635, 639
MboI	GATC	4 cut(s)	129, 456, 633, 637
MboII	GAAGA	2 cut(s)	227, 303
MflI	RGATCY	1 cut(s)	456
MhlI	GDGCHC	2 cut(s)	309, 611
MluCI	AATT	1 cut(s)	41
MlyI	GAGTC	1 cut(s)	515
MnlI	CCTC	5 cut(s)	12, 135, 217, 285, 622
MseI	TTAA	1 cut(s)	345
MslI	CAYNNNNRTG	1 cut(s)	479
MspI	CCGG	1 cut(s)	543
MspR9I	CCNGG	1 cut(s)	202
MvaI	CCWGG	1 cut(s)	202
MwoI	GCNNNNNNNGC	3 cut(s)	99, 227, 304
NcoI	CCATGG	1 cut(s)	547
NdeII	GATC	4 cut(s)	129, 456, 633, 637
NlaIII	CATG	6 cut(s)	9, 376, 427, 440, 478, 551
NlaIV	GGNNCC	2 cut(s)	447, 458
NmuCI	GTSAC	1 cut(s)	563
NspI	RCATGY	2 cut(s)	9, 478
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	1 cut(s)	509
PleI	GAGTC	1 cut(s)	515
PpsI	GAGTC	1 cut(s)	515
Psp1406I	AACGTT	1 cut(s)	602
Psp6I	CCWGG	1 cut(s)	200
PspFI	CCCAGC	1 cut(s)	558
PspGI	CCWGG	1 cut(s)	200
PspN4I	GGNNCC	2 cut(s)	447, 458
PspPI	GGNCC	3 cut(s)	35, 204, 445
PsuI	RGATCY	1 cut(s)	456
RsaI	GTAC	2 cut(s)	258, 420
RsaNI	GTAC	2 cut(s)	257, 419
RseI	CAYNNNNRTG	1 cut(s)	479
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	1 cut(s)	508
Sau3AI	GATC	4 cut(s)	129, 456, 633, 637
Sau96I	GGNCC	3 cut(s)	35, 204, 445
SchI	GAGTC	1 cut(s)	515
ScrFI	CCNGG	1 cut(s)	202
SduI	GDGCHC	2 cut(s)	309, 611
SetI	ASST	3 cut(s)	23, 345, 605
SfaNI	GCATC	2 cut(s)	102, 261
SinI	GGWCC	2 cut(s)	35, 445
SmiMI	CAYNNNNRTG	1 cut(s)	479
Sse9I	AATT	1 cut(s)	41
SsiI	CCGC	4 cut(s)	38, 100, 223, 302
SspMI	CTAG	1 cut(s)	189
StyD4I	CCNGG	1 cut(s)	200
StyI	CCWWGG	1 cut(s)	547
TaaI	ACNGT	3 cut(s)	170, 355, 492
TaiI	ACGT	1 cut(s)	605
TaqI	TCGA	2 cut(s)	572, 636
TaqII	GACCGA	1 cut(s)	641
TasI	AATT	1 cut(s)	41
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TscAI	CASTG	1 cut(s)	497
TseFI	GTSAC	1 cut(s)	563
TseI	GCWGC	1 cut(s)	507
Tsp45I	GTSAC	1 cut(s)	563
TspDTI	ATGAA	2 cut(s)	389, 612
TspGWI	ACGGA	2 cut(s)	106, 406
TspRI	CASTG	1 cut(s)	497
VpaK11BI	GGWCC	2 cut(s)	35, 445
XceI	RCATGY	2 cut(s)	9, 478
XmiI	GTMKAC	1 cut(s)	109
XspI	CTAG	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.