Rmu_co8317965.1_g000001

Metacaspase-1-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8317965.1
Physical Location & Seq
Forward (+)
459 .. 936
478 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8317965.1_g000001.1.cds

Sequence Viewer

Length: 246 bp
atgactttctctttcatccaagcaatcgagcgtggacaggcagccacatatgggagcttactcatatctatgcgtaataccattcgaggtatgggttctggtggtggtggtagtggtggtgctgttacatctcttgccggcatgcttctaacaggcggaagtgttggtggtggtaggctaagacagaagcctcaattaactggctgcgagccgttcgatgtgtacacgaaaccttttgccctatga

Protein Analysis

81

Amino Acids

8.26

Weight (kDa)

10.02

Isoelectric Point (pI)

30.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000588)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02170
fragaria_vesca FvH4_7g08970 FvH4_7g08970 FvH4_7g08970 FvH4_7g26490
malus_domestica MD01G1173500.v1.1 MD02G1221900.v1.1 MD05G1044000.v1.1 MD07G1094600.v1.1 MD07G1240400.v1.1 MD07G1240500.v1.1 MD10G1051100.v1.1 MD10G1051200.v1.1
prunus_persica Prupe.2G118900_v2.0.a1 Prupe.2G269200_v2.0.a1 Prupe.8G059400_v2.0.a1
pyrus_communis pycom01g18530 pycom01g18540 pycom02g18780 pycom05g03650 pycom07g07790 pycom07g21680 pycom10g03590
rosa_chinensis RchiOBHm_Chr1g0344331 RchiOBHm_Chr1g0344461 RchiOBHm_Chr1g0344571 RchiOBHm_Chr1g0344661 RchiOBHm_Chr1g0344751 RchiOBHm_Chr1g0344811 RchiOBHm_Chr1g0344881 RchiOBHm_Chr1g0344901 RchiOBHm_Chr1g0344911 RchiOBHm_Chr1g0373091
rosa_laevigata RLG00000028867 RLG00000028877 RLG00000028880 RLG00000028885 RLG00000028898
rosa_multiflora Rmu_co8105290.1_g000001 Rmu_co8220756.1_g000001 Rmu_co8317965.1_g000001 Rmu_co8413861.1_g000001 Rmu_co8518347.1_g000001 Rmu_sc0000390.1_g000001 Rmu_sc0005177.1_g000002 Rmu_sc0007317.1_g000002 Rmu_sc0010876.1_g000003 Rmu_sc0013714.1_g000001 Rmu_sc0029558.1_g000002 Rmu_ssc0000167.1_g000004
rosa_roxburghii Rroxscaffold_4G00284470 Rroxscaffold_4G00309530 Rroxscaffold_4G00309580 Rroxscaffold_4G00309590 Rroxscaffold_4G00309620 Rroxscaffold_4G00309630 Rroxscaffold_4G00309720 Rroxscaffold_4G00309880
rosa_rugosa Rorug01G0173200 Rorug01G0173200 Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug01G0174900 Rorug01G0376100
rosa_samantha Rh1CG175000 Rh1CG176200 Rh1CG177200 Rh1CG177800 Rh1CG177900 Rh1CG178000 Rh1CG361900 Rh1DG188500 Rh1DG188700 Rh1DG189400 Rh1DG379400
rosa_wichuraiana Rw1G015680 Rw1G015800 Rw1G015810 Rw1G015870 Rw1G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 156
AfaI GTAC 1 cut(s) 224
AfiI CCNNNNNNNGG 1 cut(s) 51
AluBI AGCT 1 cut(s) 57
AluI AGCT 1 cut(s) 57
ApeKI GCWGC 2 cut(s) 41, 204
BbvI GCAGC 2 cut(s) 53, 191
BceAI ACGGC 1 cut(s) 196
BisI GCNGC 2 cut(s) 42, 205
BlsI GCNGC 2 cut(s) 43, 206
Bsc4I CCNNNNNNNGG 1 cut(s) 51
Bse118I RCCGGY 1 cut(s) 137
Bse1I ACTGG 1 cut(s) 205
BseGI GGATG 1 cut(s) 15
BseLI CCNNNNNNNGG 1 cut(s) 51
BseNI ACTGG 1 cut(s) 205
BseXI GCAGC 2 cut(s) 53, 191
BsiSI CCGG 1 cut(s) 138
BslI CCNNNNNNNGG 1 cut(s) 51
Bsp1407I TGTACA 1 cut(s) 222
BspACI CCGC 1 cut(s) 156
BsrFI RCCGGY 1 cut(s) 137
BsrGI TGTACA 1 cut(s) 222
BsrI ACTGG 1 cut(s) 205
BssAI RCCGGY 1 cut(s) 137
BstAUI TGTACA 1 cut(s) 222
BstC8I GCNNGC 3 cut(s) 139, 143, 209
BstDEI CTNAG 1 cut(s) 179
BstF5I GGATG 1 cut(s) 15
BstNSI RCATGY 1 cut(s) 145
BstV1I GCAGC 2 cut(s) 53, 191
BtsCI GGATG 1 cut(s) 15
Cac8I GCNNGC 3 cut(s) 139, 143, 209
Cfr10I RCCGGY 1 cut(s) 137
Csp6I GTAC 1 cut(s) 223
CviAII CATG 1 cut(s) 142
CviJI RGCY 6 cut(s) 44, 57, 178, 190, 204, 211
CviKI_1 RGCY 6 cut(s) 44, 57, 178, 190, 204, 211
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 1 cut(s) 179
EciI GGCGGA 1 cut(s) 171
FaeI CATG 1 cut(s) 145
FaiI YATR 7 cut(s) 49, 51, 65, 71, 92, 143, 244
FatI CATG 1 cut(s) 141
FauNDI CATATG 1 cut(s) 49
Fnu4HI GCNGC 2 cut(s) 42, 205
FokI GGATG 1 cut(s) 2
Fsp4HI GCNGC 2 cut(s) 42, 205
GluI GCNGC 2 cut(s) 42, 205
HapII CCGG 1 cut(s) 138
Hin1II CATG 1 cut(s) 145
HpaII CCGG 1 cut(s) 138
Hpy166II GTNNAC 3 cut(s) 35, 223, 225
Hpy8I GTNNAC 3 cut(s) 35, 223, 225
HpyF3I CTNAG 1 cut(s) 179
Hsp92II CATG 1 cut(s) 145
KroI GCCGGC 1 cut(s) 137
KroNI GCCGGC 1 cut(s) 139
LmnI GCTCC 1 cut(s) 54
LpnPI CCDG 5 cut(s) 23, 84, 138, 151, 186
Lsp1109I GCAGC 2 cut(s) 53, 191
MaeIII GTNAC 1 cut(s) 124
MluCI AATT 1 cut(s) 194
MnlI CCTC 2 cut(s) 80, 201
MroNI GCCGGC 1 cut(s) 137
MseI TTAA 1 cut(s) 197
MslI CAYNNNNRTG 1 cut(s) 68
MspI CCGG 1 cut(s) 138
NaeI GCCGGC 1 cut(s) 139
NdeI CATATG 1 cut(s) 49
NgoMIV GCCGGC 1 cut(s) 137
NlaIII CATG 1 cut(s) 145
NspI RCATGY 1 cut(s) 145
PaeI GCATGC 1 cut(s) 145
PdiI GCCGGC 1 cut(s) 139
PkrI GCNGC 2 cut(s) 43, 206
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
RseI CAYNNNNRTG 1 cut(s) 68
SaqAI TTAA 1 cut(s) 197
SatI GCNGC 2 cut(s) 42, 205
SetI ASST 3 cut(s) 59, 91, 235
SmiMI CAYNNNNRTG 1 cut(s) 68
SphI GCATGC 1 cut(s) 145
Sse9I AATT 1 cut(s) 194
SsiI CCGC 1 cut(s) 156
TaqI TCGA 3 cut(s) 27, 85, 216
TasI AATT 1 cut(s) 194
TatI WGTACW 1 cut(s) 222
Tru1I TTAA 1 cut(s) 197
Tru9I TTAA 1 cut(s) 197
TseI GCWGC 2 cut(s) 41, 204
TspDTI ATGAA 1 cut(s) 4
XceI RCATGY 1 cut(s) 145
XcmI CCANNNNNNNNNTGG 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.