Rw1G015810

Metacaspase-1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000588
Physical Location & Seq
Reverse (-)
35215969 .. 35219660
3692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G015810.1

Sequence Viewer

Length: 876 bp
ATGCGGGAGAAGGCGGTGATCTGCGGGATATCGTATCTATACACGAGGGGTGAGCTCAACGGTTGCATCAATGACGCCAAACGCATGCGGAGTCTCCTCATCAGCATGTTCAATTTTGCAGAAGATTCCATTATCATGCTCACTGAGAAAGAAACTGACCCATATAAGATTCCATATAAAAGCAATATTGAAGGGGCATTACGTTGGCTTGTACAAGGATGTCAACCGGGTGACTCCCTTCTGTTTTACTTCGCTGGTCATGGTTCACAGCTGAGGGAGCAGTATCGTGGTGATGAACTTGATGGAAAGGATGAAACCCTTTGTCCCCTTGACTTCGAAACCAAGGGTATGATTCGTGATGATTGGATAAATGCAACAATTGTGGGGCCCATTCCACGTGACGTCAAGCTTCATGCAATTGTAGATTCTTGTAGTAGTGGCACCATACTGGATTTGCCATGGCTTTGCAATATGGACTGGGATGGAAGCTGTACATGGGACAAGGCATCAGGCGTATGGAAAGGAGCAAGTGGTGGAGAAGTTATATGTATCAGTGGTTGTCATGACCATCAAACCTCTGCGGAAACACAATCAATCCCAGCAACAGGTGTCATGACTTCCTGCTTCATCCAAGCAATCAAGAGTGGACAGGCAGCCACATATGGGAGCTTACTCAATTCTATGCGTAGTACCATTCGAAGTATGGGTTCTGCTGCTGGTGGTAGTGGTGGTGCTGTTACATCTCTTGCCGGCATGCTTCTAGCAGGCGGAAGTGTTGGTGGTGGTGGGCTGAGACAGGATATGCATCTGAAATCCCCATTATATGACCTTGTTTACTTGAATTACTTTTCTGGTCTTAACAAAATGATAGGGTAG

Protein Analysis

291

Amino Acids

31.41

Weight (kDa)

5.39

Isoelectric Point (pI)

37.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C14 PF00656 3 - 233 1.9e-31 Caspase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000588)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02170
fragaria_vesca FvH4_7g08970 FvH4_7g08970 FvH4_7g08970 FvH4_7g26490
malus_domestica MD01G1173500.v1.1 MD02G1221900.v1.1 MD05G1044000.v1.1 MD07G1094600.v1.1 MD07G1240400.v1.1 MD07G1240500.v1.1 MD10G1051100.v1.1 MD10G1051200.v1.1
prunus_persica Prupe.2G118900_v2.0.a1 Prupe.2G269200_v2.0.a1 Prupe.8G059400_v2.0.a1
pyrus_communis pycom01g18530 pycom01g18540 pycom02g18780 pycom05g03650 pycom07g07790 pycom07g21680 pycom10g03590
rosa_chinensis RchiOBHm_Chr1g0344331 RchiOBHm_Chr1g0344461 RchiOBHm_Chr1g0344571 RchiOBHm_Chr1g0344661 RchiOBHm_Chr1g0344751 RchiOBHm_Chr1g0344811 RchiOBHm_Chr1g0344881 RchiOBHm_Chr1g0344901 RchiOBHm_Chr1g0344911 RchiOBHm_Chr1g0373091
rosa_laevigata RLG00000028867 RLG00000028877 RLG00000028880 RLG00000028885 RLG00000028898
rosa_multiflora Rmu_co8105290.1_g000001 Rmu_co8220756.1_g000001 Rmu_co8317965.1_g000001 Rmu_co8413861.1_g000001 Rmu_co8518347.1_g000001 Rmu_sc0000390.1_g000001 Rmu_sc0005177.1_g000002 Rmu_sc0007317.1_g000002 Rmu_sc0010876.1_g000003 Rmu_sc0013714.1_g000001 Rmu_sc0029558.1_g000002 Rmu_ssc0000167.1_g000004
rosa_roxburghii Rroxscaffold_4G00284470 Rroxscaffold_4G00309530 Rroxscaffold_4G00309580 Rroxscaffold_4G00309590 Rroxscaffold_4G00309620 Rroxscaffold_4G00309630 Rroxscaffold_4G00309720 Rroxscaffold_4G00309880
rosa_rugosa Rorug01G0173200 Rorug01G0173200 Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug01G0174900 Rorug01G0376100
rosa_samantha Rh1CG175000 Rh1CG176200 Rh1CG177200 Rh1CG177800 Rh1CG177900 Rh1CG178000 Rh1CG361900 Rh1DG188500 Rh1DG188700 Rh1DG189400 Rh1DG379400
rosa_wichuraiana Rw1G015680 Rw1G015800 Rw1G015810 Rw1G015870 Rw1G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 405
AccB1I GGYRCC 1 cut(s) 440
AciI CCGC 6 cut(s) 4, 14, 24, 88, 581, 768
AcvI CACGTG 1 cut(s) 398
AcyI GRCGYC 2 cut(s) 75, 402
AfaI GTAC 3 cut(s) 213, 493, 691
AfiI CCNNNNNNNGG 2 cut(s) 605, 663
AgsI TTSAA 3 cut(s) 112, 191, 841
AluBI AGCT 5 cut(s) 55, 271, 409, 489, 669
AluI AGCT 5 cut(s) 55, 271, 409, 489, 669
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 2 cut(s) 98, 787
AoxI GGCC 1 cut(s) 386
ApaI GGGCCC 1 cut(s) 390
ApeKI GCWGC 2 cut(s) 653, 713
AspS9I GGNCC 2 cut(s) 386, 387
AsuC2I CCSGG 1 cut(s) 228
AsuHPI GGTGA 4 cut(s) 28, 62, 242, 302
AsuII TTCGAA 2 cut(s) 336, 697
BaeGI GKGCMC 1 cut(s) 390
BanI GGYRCC 1 cut(s) 440
BanII GRGCYC 2 cut(s) 57, 390
BarI GAAGNNNNNNTAC 2 cut(s) 183, 215
BauI CACGAG 1 cut(s) 43
BbrPI CACGTG 1 cut(s) 398
Bbv12I GWGCWC 1 cut(s) 57
BbvCI CCTCAGC 1 cut(s) 272
BbvI GCAGC 2 cut(s) 665, 700
BccI CCATC 3 cut(s) 296, 476, 576
BcnI CCSGG 1 cut(s) 228
BcoDI GTCTC 2 cut(s) 98, 787
BfaI CTAG 1 cut(s) 761
BisI GCNGC 2 cut(s) 654, 714
BlsI GCNGC 2 cut(s) 655, 715
Bme1390I CCNGG 1 cut(s) 228
BmgT120I GGNCC 2 cut(s) 386, 387
BmiI GGNNCC 3 cut(s) 387, 388, 442
BmrFI CCNGG 1 cut(s) 228
BmrI ACTGGG 1 cut(s) 487
BmsI GCATC 3 cut(s) 75, 515, 814
BmuI ACTGGG 1 cut(s) 487
Bpu10I CCTNAGC 1 cut(s) 272
Bpu14I TTCGAA 2 cut(s) 336, 697
BpuMI CCSGG 1 cut(s) 228
BsaAI YACGTR 1 cut(s) 398
BsaBI GATNNNNATC 1 cut(s) 804
BsaHI GRCGYC 2 cut(s) 75, 402
BsaJI CCNNGG 2 cut(s) 342, 458
Bsc4I CCNNNNNNNGG 2 cut(s) 605, 663
Bse118I RCCGGY 1 cut(s) 749
Bse1I ACTGG 2 cut(s) 453, 482
Bse8I GATNNNNATC 1 cut(s) 804
BseDI CCNNGG 2 cut(s) 342, 458
BseGI GGATG 4 cut(s) 224, 316, 487, 627
BseJI GATNNNNATC 1 cut(s) 804
BseLI CCNNNNNNNGG 2 cut(s) 605, 663
BseMII CTCAG 3 cut(s) 135, 263, 782
BseNI ACTGG 2 cut(s) 453, 482
BseRI GAGGAG 1 cut(s) 86
BseSI GKGCMC 1 cut(s) 390
BseXI GCAGC 2 cut(s) 665, 700
BseYI CCCAGC 1 cut(s) 598
BshFI GGCC 1 cut(s) 388
BshNI GGYRCC 1 cut(s) 440
BsiHKAI GWGCWC 1 cut(s) 57
BsiSI CCGG 2 cut(s) 227, 750
BslFI GGGAC 2 cut(s) 309, 512
BslI CCNNNNNNNGG 2 cut(s) 605, 663
BsmAI GTCTC 2 cut(s) 98, 787
BsmFI GGGAC 2 cut(s) 309, 512
BsnI GGCC 1 cut(s) 388
Bsp119I TTCGAA 2 cut(s) 336, 697
Bsp120I GGGCCC 1 cut(s) 386
Bsp1286I GDGCHC 2 cut(s) 57, 390
Bsp1407I TGTACA 2 cut(s) 211, 491
Bsp143I GATC 1 cut(s) 18
Bsp19I CCATGG 1 cut(s) 458
BspACI CCGC 6 cut(s) 4, 14, 24, 88, 581, 768
BspANI GGCC 1 cut(s) 388
BspCNI CTCAG 3 cut(s) 136, 264, 783
BspHI TCATGA 2 cut(s) 562, 612
BspLI GGNNCC 3 cut(s) 387, 388, 442
BspT104I TTCGAA 2 cut(s) 336, 697
BspT107I GGYRCC 1 cut(s) 440
BsrFI RCCGGY 1 cut(s) 749
BsrGI TGTACA 2 cut(s) 211, 491
BsrI ACTGG 2 cut(s) 453, 482
BssAI RCCGGY 1 cut(s) 749
BssECI CCNNGG 2 cut(s) 342, 458
BssMI GATC 1 cut(s) 18
BssNI GRCGYC 2 cut(s) 75, 402
BssSI CACGAG 1 cut(s) 43
BssT1I CCWWGG 2 cut(s) 342, 458
Bst2BI CACGAG 1 cut(s) 43
Bst4CI ACNGT 1 cut(s) 62
BstACI GRCGYC 2 cut(s) 75, 402
BstAUI TGTACA 2 cut(s) 211, 491
BstBAI YACGTR 1 cut(s) 398
BstBI TTCGAA 2 cut(s) 336, 697
BstC8I GCNNGC 4 cut(s) 86, 751, 755, 766
BstDEI CTNAG 3 cut(s) 144, 272, 791
BstDSI CCRYGG 1 cut(s) 458
BstF5I GGATG 4 cut(s) 224, 316, 487, 627
BstKTI GATC 1 cut(s) 21
BstMAI GTCTC 2 cut(s) 98, 787
BstMBI GATC 1 cut(s) 18
BstMWI GCNNNNNNNGC 1 cut(s) 277
BstNSI RCATGY 3 cut(s) 88, 109, 757
BstSCI CCNGG 1 cut(s) 226
BstSLI GKGCMC 1 cut(s) 390
BstV1I GCAGC 2 cut(s) 665, 700
BsuRI GGCC 1 cut(s) 388
BtgI CCRYGG 1 cut(s) 458
BtsCI GGATG 4 cut(s) 224, 316, 487, 627
BtsIMutI CAGTG 2 cut(s) 141, 559
Cac8I GCNNGC 4 cut(s) 86, 751, 755, 766
CciI TCATGA 2 cut(s) 562, 612
Cfr10I RCCGGY 1 cut(s) 749
Cfr13I GGNCC 2 cut(s) 386, 387
CseI GACGC 1 cut(s) 83
Csp6I GTAC 3 cut(s) 212, 492, 690
CspCI CAANNNNNGTGG 2 cut(s) 363, 398
CviQI GTAC 3 cut(s) 212, 492, 690
DdeI CTNAG 3 cut(s) 144, 272, 791
DpnI GATC 1 cut(s) 20
DpnII GATC 1 cut(s) 18
EciI GGCGGA 1 cut(s) 783
Ecl136II GAGCTC 1 cut(s) 55
Eco130I CCWWGG 2 cut(s) 342, 458
Eco24I GRGCYC 2 cut(s) 57, 390
Eco32I GATATC 1 cut(s) 30
Eco53kI GAGCTC 1 cut(s) 55
Eco72I CACGTG 1 cut(s) 398
EcoICRI GAGCTC 1 cut(s) 55
EcoO109I RGGNCCY 1 cut(s) 386
EcoRV GATATC 1 cut(s) 30
EcoT14I CCWWGG 2 cut(s) 342, 458
EcoT22I ATGCAT 1 cut(s) 807
EcoT38I GRGCYC 2 cut(s) 57, 390
ErhI CCWWGG 2 cut(s) 342, 458
FaqI GGGAC 2 cut(s) 309, 512
FauI CCCGC 1 cut(s) 17
FauNDI CATATG 1 cut(s) 661
Fnu4HI GCNGC 2 cut(s) 654, 714
FokI GGATG 4 cut(s) 231, 323, 494, 614
FriOI GRGCYC 2 cut(s) 57, 390
Fsp4HI GCNGC 2 cut(s) 654, 714
FspBI CTAG 1 cut(s) 761
GluI GCNGC 2 cut(s) 654, 714
GsaI CCCAGC 1 cut(s) 602
HaeIII GGCC 1 cut(s) 388
HapII CCGG 2 cut(s) 227, 750
HgaI GACGC 1 cut(s) 83
Hin1I GRCGYC 2 cut(s) 75, 402
HincII GTYRAC 1 cut(s) 224
HindII GTYRAC 1 cut(s) 224
HindIII AAGCTT 1 cut(s) 407
HinfI GANTC 6 cut(s) 91, 125, 169, 233, 352, 425
HpaII CCGG 2 cut(s) 227, 750
HphI GGTGA 4 cut(s) 28, 62, 242, 302
Hpy166II GTNNAC 4 cut(s) 224, 266, 647, 835
Hpy188I TCNGA 1 cut(s) 810
Hpy188III TCNNGA 4 cut(s) 356, 563, 613, 640
Hpy8I GTNNAC 4 cut(s) 224, 266, 647, 835
HpyAV CCTTC 3 cut(s) 4, 185, 248
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4IV ACGT 3 cut(s) 202, 397, 402
HpyCH4V TGCA 6 cut(s) 66, 119, 374, 416, 468, 805
HpyF10VI GCNNNNNNNGC 1 cut(s) 277
HpyF3I CTNAG 3 cut(s) 144, 272, 791
HpySE526I ACGT 3 cut(s) 202, 397, 402
Hsp92I GRCGYC 2 cut(s) 75, 402
KroI GCCGGC 1 cut(s) 749
KroNI GCCGGC 1 cut(s) 751
Kzo9I GATC 1 cut(s) 18
LmnI GCTCC 3 cut(s) 277, 524, 666
Lsp1109I GCAGC 2 cut(s) 665, 700
LweI GCATC 3 cut(s) 75, 515, 814
MaeI CTAG 1 cut(s) 761
MaeII ACGT 3 cut(s) 202, 397, 402
MaeIII GTNAC 3 cut(s) 230, 398, 736
MalI GATC 1 cut(s) 20
MboI GATC 1 cut(s) 18
MboII GAAGA 1 cut(s) 134
MfeI CAATTG 2 cut(s) 378, 417
MhlI GDGCHC 2 cut(s) 57, 390
MluCI AATT 5 cut(s) 112, 378, 417, 676, 841
MlyI GAGTC 2 cut(s) 100, 227
MnlI CCTC 4 cut(s) 39, 107, 267, 586
Mph1103I ATGCAT 1 cut(s) 807
MroNI GCCGGC 1 cut(s) 749
MseI TTAA 1 cut(s) 858
MslI CAYNNNNRTG 2 cut(s) 104, 134
MspA1I CMGCKG 1 cut(s) 271
MspI CCGG 2 cut(s) 227, 750
MspR9I CCNGG 1 cut(s) 228
MunI CAATTG 2 cut(s) 378, 417
MwoI GCNNNNNNNGC 1 cut(s) 277
NaeI GCCGGC 1 cut(s) 751
NciI CCSGG 1 cut(s) 228
NcoI CCATGG 1 cut(s) 458
NdeI CATATG 1 cut(s) 661
NdeII GATC 1 cut(s) 18
NgoMIV GCCGGC 1 cut(s) 749
NlaIV GGNNCC 3 cut(s) 387, 388, 442
NmuCI GTSAC 2 cut(s) 230, 398
NsiI ATGCAT 1 cut(s) 807
NspI RCATGY 3 cut(s) 88, 109, 757
NspV TTCGAA 2 cut(s) 336, 697
PaeI GCATGC 2 cut(s) 88, 757
PagI TCATGA 2 cut(s) 562, 612
PdiI GCCGGC 1 cut(s) 751
PfeI GAWTC 4 cut(s) 125, 169, 352, 425
PkrI GCNGC 2 cut(s) 655, 715
PleI GAGTC 2 cut(s) 99, 227
PmaCI CACGTG 1 cut(s) 398
PmlI CACGTG 1 cut(s) 398
PpsI GAGTC 2 cut(s) 99, 227
Ppu21I YACGTR 1 cut(s) 398
Psp124BI GAGCTC 1 cut(s) 57
PspCI CACGTG 1 cut(s) 398
PspFI CCCAGC 1 cut(s) 598
PspN4I GGNNCC 3 cut(s) 387, 388, 442
PspOMI GGGCCC 1 cut(s) 386
PspPI GGNCC 2 cut(s) 386, 387
PvuII CAGCTG 1 cut(s) 271
RsaI GTAC 3 cut(s) 213, 493, 691
RsaNI GTAC 3 cut(s) 212, 492, 690
RseI CAYNNNNRTG 2 cut(s) 104, 134
SacI GAGCTC 1 cut(s) 57
SaqAI TTAA 1 cut(s) 858
SatI GCNGC 2 cut(s) 654, 714
Sau3AI GATC 1 cut(s) 18
Sau96I GGNCC 2 cut(s) 386, 387
SchI GAGTC 2 cut(s) 100, 227
ScrFI CCNGG 1 cut(s) 228
SduI GDGCHC 2 cut(s) 57, 390
SfaNI GCATC 3 cut(s) 75, 515, 814
SfuI TTCGAA 2 cut(s) 336, 697
SmiMI CAYNNNNRTG 2 cut(s) 104, 134
SphI GCATGC 2 cut(s) 88, 757
Sse9I AATT 5 cut(s) 112, 378, 417, 676, 841
SsiI CCGC 6 cut(s) 4, 14, 24, 88, 581, 768
SspI AATATT 1 cut(s) 187
SspMI CTAG 1 cut(s) 761
SstI GAGCTC 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 226
StyI CCWWGG 2 cut(s) 342, 458
TaaI ACNGT 1 cut(s) 62
TaiI ACGT 3 cut(s) 205, 400, 405
TaqI TCGA 2 cut(s) 336, 697
TasI AATT 5 cut(s) 112, 378, 417, 676, 841
TatI WGTACW 2 cut(s) 211, 491
TfiI GAWTC 4 cut(s) 125, 169, 352, 425
Tru1I TTAA 1 cut(s) 858
Tru9I TTAA 1 cut(s) 858
TscAI CASTG 2 cut(s) 148, 559
TseFI GTSAC 2 cut(s) 230, 398
TseI GCWGC 2 cut(s) 653, 713
Tsp45I GTSAC 2 cut(s) 230, 398
TspDTI ATGAA 4 cut(s) 309, 327, 401, 616
TspRI CASTG 2 cut(s) 148, 559
XceI RCATGY 3 cut(s) 88, 109, 757
XcmI CCANNNNNNNNNTGG 1 cut(s) 700
XspI CTAG 1 cut(s) 761
ZraI GACGTC 1 cut(s) 403
Zsp2I ATGCAT 1 cut(s) 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.