Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005177.1

Orthogroup ID

OG0000588

Physical Location & Seq

Genomic Coordinates Forward (+)

3764 .. 4604

Gene Structure 841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005177.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

atggcattacattggtttgtacagggatgccaaccaggtgactcccttgtgtttcactactctggtcatagttcacggcagagggattatcatggtgatgaagttgacggatatgatgaaaccctttgtccccttgacttcgaaacccagggtatgattgtcgatgatgaaataaatgcaataattgttaggcccattccacatgggctcaagcttcatgcaattatagattcttgtcatagtggcaccatactggatttgaagaatggacaggatcatcgccctcaatcgggaatatggacaagaacaagtggtggagaggttatatctatcagtggttgtgatgaccatcaaacctctgctgatacatcactgaggcgcataggggcggagtctccagaattcaagcttctcaccgtcgatttgctctccaaacttgacgattcgatgaatgaaaaccggagatgggacacgacacctagacaaagagattggggccagtgcaccggccagagatggctggaaggagaagttcatgccggatccccttcgcgggtttccgggtatggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0010941 GO:0010942 GO:0016787 GO:0019538 GO:0043067 GO:0043068 GO:0043170 GO:0044238 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MORN Peptidase_C14 zf-LSD1

Protein Analysis

190

Amino Acids

21.2

Weight (kDa)

5.13

Isoelectric Point (pI)

43.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000588)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02170
fragaria_vesca	FvH4_7g08970 FvH4_7g08970 FvH4_7g08970 FvH4_7g26490
malus_domestica	MD01G1173500.v1.1 MD02G1221900.v1.1 MD05G1044000.v1.1 MD07G1094600.v1.1 MD07G1240400.v1.1 MD07G1240500.v1.1 MD10G1051100.v1.1 MD10G1051200.v1.1
prunus_persica	Prupe.2G118900_v2.0.a1 Prupe.2G269200_v2.0.a1 Prupe.8G059400_v2.0.a1
pyrus_communis	pycom01g18530 pycom01g18540 pycom02g18780 pycom05g03650 pycom07g07790 pycom07g21680 pycom10g03590
rosa_chinensis	RchiOBHm_Chr1g0344331 RchiOBHm_Chr1g0344461 RchiOBHm_Chr1g0344571 RchiOBHm_Chr1g0344661 RchiOBHm_Chr1g0344751 RchiOBHm_Chr1g0344811 RchiOBHm_Chr1g0344881 RchiOBHm_Chr1g0344901 RchiOBHm_Chr1g0344911 RchiOBHm_Chr1g0373091
rosa_laevigata	RLG00000028867 RLG00000028877 RLG00000028880 RLG00000028885 RLG00000028898
rosa_multiflora	Rmu_co8105290.1_g000001 Rmu_co8220756.1_g000001 Rmu_co8317965.1_g000001 Rmu_co8413861.1_g000001 Rmu_co8518347.1_g000001 Rmu_sc0000390.1_g000001 Rmu_sc0005177.1_g000002 Rmu_sc0007317.1_g000002 Rmu_sc0010876.1_g000003 Rmu_sc0013714.1_g000001 Rmu_sc0029558.1_g000002 Rmu_ssc0000167.1_g000004
rosa_roxburghii	Rroxscaffold_4G00284470 Rroxscaffold_4G00309530 Rroxscaffold_4G00309580 Rroxscaffold_4G00309590 Rroxscaffold_4G00309620 Rroxscaffold_4G00309630 Rroxscaffold_4G00309720 Rroxscaffold_4G00309880
rosa_rugosa	Rorug01G0173200 Rorug01G0173200 Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug01G0174900 Rorug01G0376100
rosa_samantha	Rh1CG175000 Rh1CG176200 Rh1CG177200 Rh1CG177800 Rh1CG177900 Rh1CG178000 Rh1CG361900 Rh1DG188500 Rh1DG188700 Rh1DG189400 Rh1DG379400
rosa_wichuraiana	Rw1G015680 Rw1G015800 Rw1G015810 Rw1G015870 Rw1G033900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	245
AccII	CGCG	1 cut(s)	553
AciI	CCGC	2 cut(s)	389, 553
AclWI	GGATC	3 cut(s)	282, 537, 550
AcoI	YGGCCR	1 cut(s)	508
AcsI	RAATTY	1 cut(s)	401
AfaI	GTAC	1 cut(s)	21
AfiI	CCNNNNNNNGG	5 cut(s)	289, 290, 466, 552, 553
AgsI	TTSAA	2 cut(s)	262, 406
AjnI	CCWGG	2 cut(s)	34, 147
AluBI	AGCT	2 cut(s)	214, 409
AluI	AGCT	2 cut(s)	214, 409
Alw21I	GWGCWC	1 cut(s)	506
Alw26I	GTCTC	1 cut(s)	399
Alw44I	GTGCAC	1 cut(s)	502
AlwI	GGATC	3 cut(s)	282, 537, 550
AoxI	GGCC	3 cut(s)	191, 496, 508
ApaLI	GTGCAC	1 cut(s)	502
ApoI	RAATTY	1 cut(s)	401
AspLEI	GCGC	1 cut(s)	381
AspS9I	GGNCC	2 cut(s)	192, 496
AsuC2I	CCSGG	1 cut(s)	562
AsuHPI	GGTGA	3 cut(s)	50, 107, 406
AsuII	TTCGAA	1 cut(s)	141
BaeGI	GKGCMC	1 cut(s)	506
BamHI	GGATCC	1 cut(s)	542
BanI	GGYRCC	1 cut(s)	245
BanII	GRGCYC	1 cut(s)	210
Bbv12I	GWGCWC	1 cut(s)	506
BccI	CCATC	3 cut(s)	357, 459, 510
BceAI	ACGGC	1 cut(s)	92
BciT130I	CCWGG	2 cut(s)	36, 149
BcnI	CCSGG	1 cut(s)	562
BcoDI	GTCTC	1 cut(s)	399
BfaI	CTAG	1 cut(s)	480
Bme1390I	CCNGG	3 cut(s)	36, 149, 562
BmgT120I	GGNCC	2 cut(s)	192, 496
BmiI	GGNNCC	3 cut(s)	247, 497, 544
BmrFI	CCNGG	3 cut(s)	36, 149, 562
BmsI	GCATC	1 cut(s)	17
BpmI	CTGGAG	1 cut(s)	381
Bpu14I	TTCGAA	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	194
BpuMI	CCSGG	1 cut(s)	562
BsaBI	GATNNNNATC	1 cut(s)	348
BsaJI	CCNNGG	2 cut(s)	147, 148
BsaWI	WCCGGW	1 cut(s)	459
Bsc4I	CCNNNNNNNGG	5 cut(s)	289, 290, 466, 552, 553
Bse118I	RCCGGY	1 cut(s)	506
Bse1I	ACTGG	2 cut(s)	258, 499
Bse8I	GATNNNNATC	1 cut(s)	348
BseBI	CCWGG	2 cut(s)	36, 149
BseDI	CCNNGG	2 cut(s)	147, 148
BseGI	GGATG	1 cut(s)	32
BseJI	GATNNNNATC	1 cut(s)	348
BseLI	CCNNNNNNNGG	5 cut(s)	289, 290, 466, 552, 553
BseMII	CTCAG	1 cut(s)	365
BseNI	ACTGG	2 cut(s)	258, 499
BseSI	GKGCMC	1 cut(s)	506
Bsh1236I	CGCG	1 cut(s)	553
BshFI	GGCC	3 cut(s)	193, 498, 510
BshNI	GGYRCC	1 cut(s)	245
BsiHKAI	GWGCWC	1 cut(s)	506
BsiSI	CCGG	4 cut(s)	460, 507, 540, 561
BslFI	GGGAC	2 cut(s)	114, 482
BslI	CCNNNNNNNGG	5 cut(s)	289, 290, 466, 552, 553
BsmAI	GTCTC	1 cut(s)	399
BsmFI	GGGAC	2 cut(s)	114, 482
BsnI	GGCC	3 cut(s)	193, 498, 510
Bsp119I	TTCGAA	1 cut(s)	141
Bsp1286I	GDGCHC	2 cut(s)	210, 506
Bsp1407I	TGTACA	1 cut(s)	19
Bsp143I	GATC	2 cut(s)	274, 542
BspACI	CCGC	2 cut(s)	389, 553
BspANI	GGCC	3 cut(s)	193, 498, 510
BspCNI	CTCAG	1 cut(s)	366
BspFNI	CGCG	1 cut(s)	553
BspLI	GGNNCC	3 cut(s)	247, 497, 544
BspPI	GGATC	3 cut(s)	282, 537, 550
BspT104I	TTCGAA	1 cut(s)	141
BspT107I	GGYRCC	1 cut(s)	245
BsrFI	RCCGGY	1 cut(s)	506
BsrGI	TGTACA	1 cut(s)	19
BsrI	ACTGG	2 cut(s)	258, 499
BssAI	RCCGGY	1 cut(s)	506
BssECI	CCNNGG	2 cut(s)	147, 148
BssMI	GATC	2 cut(s)	274, 542
Bst2UI	CCWGG	2 cut(s)	36, 149
Bst4CI	ACNGT	1 cut(s)	418
BstAUI	TGTACA	1 cut(s)	19
BstBI	TTCGAA	1 cut(s)	141
BstDEI	CTNAG	1 cut(s)	374
BstF5I	GGATG	1 cut(s)	32
BstFNI	CGCG	1 cut(s)	553
BstHHI	GCGC	1 cut(s)	381
BstKTI	GATC	2 cut(s)	277, 545
BstMAI	GTCTC	1 cut(s)	399
BstMBI	GATC	2 cut(s)	274, 542
BstNI	CCWGG	2 cut(s)	36, 149
BstSCI	CCNGG	3 cut(s)	34, 147, 560
BstSLI	GKGCMC	1 cut(s)	506
BstUI	CGCG	1 cut(s)	553
BstX2I	RGATCY	1 cut(s)	542
BstYI	RGATCY	1 cut(s)	542
BsuRI	GGCC	3 cut(s)	193, 498, 510
BtgZI	GCGATG	1 cut(s)	263
BtsCI	GGATG	1 cut(s)	32
BtsIMutI	CAGTG	3 cut(s)	340, 371, 506
CfoI	GCGC	1 cut(s)	381
Cfr10I	RCCGGY	1 cut(s)	506
Cfr13I	GGNCC	2 cut(s)	192, 496
CsiI	ACCWGGT	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	20
CviAII	CATG	4 cut(s)	92, 203, 218, 536
CviJI	RGCY	7 cut(s)	193, 208, 214, 409, 498, 510, 520
CviKI_1	RGCY	7 cut(s)	193, 208, 214, 409, 498, 510, 520
CviQI	GTAC	1 cut(s)	20
DdeI	CTNAG	1 cut(s)	374
DpnI	GATC	2 cut(s)	276, 544
DpnII	GATC	2 cut(s)	274, 542
EaeI	YGGCCR	1 cut(s)	508
EciI	GGCGGA	1 cut(s)	404
Eco24I	GRGCYC	1 cut(s)	210
EcoRI	GAATTC	1 cut(s)	401
EcoRII	CCWGG	2 cut(s)	34, 147
EcoT38I	GRGCYC	1 cut(s)	210
FaeI	CATG	4 cut(s)	95, 206, 221, 539
FaqI	GGGAC	2 cut(s)	114, 482
FatI	CATG	4 cut(s)	91, 202, 217, 535
FauI	CCCGC	1 cut(s)	546
FokI	GGATG	1 cut(s)	39
FriOI	GRGCYC	1 cut(s)	210
FspBI	CTAG	1 cut(s)	480
GlaI	GCGC	1 cut(s)	380
GsuI	CTGGAG	1 cut(s)	381
HaeIII	GGCC	3 cut(s)	193, 498, 510
HapII	CCGG	4 cut(s)	460, 507, 540, 561
HhaI	GCGC	1 cut(s)	381
Hin1II	CATG	4 cut(s)	95, 206, 221, 539
Hin6I	GCGC	1 cut(s)	379
HinP1I	GCGC	1 cut(s)	379
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HindIII	AAGCTT	2 cut(s)	212, 407
HinfI	GANTC	4 cut(s)	41, 230, 392, 443
HpaII	CCGG	4 cut(s)	460, 507, 540, 561
HphI	GGTGA	3 cut(s)	50, 107, 406
Hpy166II	GTNNAC	3 cut(s)	74, 106, 504
Hpy188III	TCNNGA	2 cut(s)	291, 398
Hpy8I	GTNNAC	3 cut(s)	74, 106, 504
Hpy99I	CGWCG	1 cut(s)	422
HpyAV	CCTTC	2 cut(s)	518, 558
HpyCH4III	ACNGT	1 cut(s)	418
HpyCH4V	TGCA	3 cut(s)	179, 221, 504
HpyF3I	CTNAG	1 cut(s)	374
Hsp92II	CATG	4 cut(s)	95, 206, 221, 539
HspAI	GCGC	1 cut(s)	379
Kzo9I	GATC	2 cut(s)	274, 542
LweI	GCATC	1 cut(s)	17
MabI	ACCWGGT	1 cut(s)	34
MaeI	CTAG	1 cut(s)	480
MaeIII	GTNAC	1 cut(s)	38
MalI	GATC	2 cut(s)	276, 544
MboI	GATC	2 cut(s)	274, 542
MboII	GAAGA	1 cut(s)	274
MflI	RGATCY	1 cut(s)	542
MhlI	GDGCHC	2 cut(s)	210, 506
MluCI	AATT	3 cut(s)	183, 222, 401
MlyI	GAGTC	2 cut(s)	35, 401
MnlI	CCTC	5 cut(s)	75, 294, 313, 367, 369
MslI	CAYNNNNRTG	1 cut(s)	96
MspI	CCGG	4 cut(s)	460, 507, 540, 561
MspR9I	CCNGG	3 cut(s)	36, 149, 562
MvaI	CCWGG	2 cut(s)	36, 149
MvnI	CGCG	1 cut(s)	553
NciI	CCSGG	1 cut(s)	562
NdeII	GATC	2 cut(s)	274, 542
NlaIII	CATG	4 cut(s)	95, 206, 221, 539
NlaIV	GGNNCC	3 cut(s)	247, 497, 544
NmuCI	GTSAC	1 cut(s)	38
NspV	TTCGAA	1 cut(s)	141
PasI	CCCWGGG	1 cut(s)	148
PfeI	GAWTC	2 cut(s)	230, 443
PleI	GAGTC	2 cut(s)	35, 400
PpsI	GAGTC	2 cut(s)	35, 400
Psp6I	CCWGG	2 cut(s)	34, 147
PspGI	CCWGG	2 cut(s)	34, 147
PspN4I	GGNNCC	3 cut(s)	247, 497, 544
PspPI	GGNCC	2 cut(s)	192, 496
PsuI	RGATCY	1 cut(s)	542
RsaI	GTAC	1 cut(s)	21
RsaNI	GTAC	1 cut(s)	20
RseI	CAYNNNNRTG	1 cut(s)	96
Sau3AI	GATC	2 cut(s)	274, 542
Sau96I	GGNCC	2 cut(s)	192, 496
SchI	GAGTC	2 cut(s)	35, 401
ScrFI	CCNGG	3 cut(s)	36, 149, 562
SduI	GDGCHC	2 cut(s)	210, 506
SetI	ASST	6 cut(s)	40, 216, 324, 359, 411, 481
SexAI	ACCWGGT	1 cut(s)	34
SfaNI	GCATC	1 cut(s)	17
SfuI	TTCGAA	1 cut(s)	141
SmiMI	CAYNNNNRTG	1 cut(s)	96
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	3 cut(s)	183, 222, 401
SsiI	CCGC	2 cut(s)	389, 553
SspMI	CTAG	1 cut(s)	480
StyD4I	CCNGG	3 cut(s)	34, 147, 560
TaaI	ACNGT	1 cut(s)	418
TaqI	TCGA	4 cut(s)	141, 162, 420, 446
TasI	AATT	3 cut(s)	183, 222, 401
TatI	WGTACW	1 cut(s)	19
TfiI	GAWTC	2 cut(s)	230, 443
TscAI	CASTG	3 cut(s)	340, 378, 506
TseFI	GTSAC	1 cut(s)	38
Tsp45I	GTSAC	1 cut(s)	38
TspDTI	ATGAA	7 cut(s)	114, 132, 183, 206, 464, 468, 524
TspGWI	ACGGA	1 cut(s)	123
TspRI	CASTG	3 cut(s)	340, 378, 506
VneI	GTGCAC	1 cut(s)	502
XapI	RAATTY	1 cut(s)	401
XspI	CTAG	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.