Rroxscaffold_4G00309880

Metacaspase-1-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
31708323 .. 31710475
2153 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00309880.1

Sequence Viewer

Length: 1146 bp
ATGCACTTCTCCTCCAGATTCCATGATGATGAGCAATTATGGAGGCCAAAGACTACTAGTGGTCGACTGTTGCTATTGCCAGACCCAAATCCAGCTGCCTTCTGTGAGTCCGATATACATCGTCGGCACATCCGTCCGCTGCGGCCGCTGCTACGCCAGTACCCGCGTCGCCTCTCCGGGCTTCCCCCGCTCCCCCATAGTGCAGTACCCTACTATGCCCTTATAAACCCACCACCACATGCCTGCTTCCCCCATACATCACCTGGACCTCCGCTGAACGTGCATGGGCGGAAGAAGGCGGTGATCTGCGGGATATCGTATAGAAACTCGAGGGATGAGCTCAATTGTTGCATCAATGACGCCAAATGCATGCGGTATCTCCTCATCACCAAGTTCAAGTTTCCAGAAGATTCCATTCTCATGCTCACTGAAGAAGAAACTCACCCACATAAGATTCCATATAAAAACAACATTAGAAGGGCATTATGTTGGCTTGTACAAGGATGTCAATCGGGGGACTCCCTTCTGTTTTACTTCTCCGGTCATGGTTCACGGCAGAGGAATTATGATGGTGATGAAGTTGATGGATATGATGAAACCCTTTGTCCCCTTGACTTTGAAACCCAGGGTATGATTGTTGATGATGAGATAAATGCAGCAATTGTTAGGCCCATTCCACATGGGGTCAAGCTTCATGCAATTATAGATTCTTGTCATAGTGGCACCCTACTGGATTTGCCATGCCTTTGCAGAATGGACAGGGGTGGAAAATATGTATGGGAGGATCATCGACCTCCATCAGGCGTATGGAAAGGAACAAGTGGTGGACAAATTATATCTATCAGCGGTTGTGATGACCATCAAACCTCTGCGGAGACATCAATCACATCAACAGGTGCCATGACTTTCTCTTTCATCCAAGCAATCGAGCGTGGACAGGCAGCCACATATGGGAGCTTACTCATATCTATGCGTAATACCATTCGAAGTATGGGTTCTGGTGGTGGTGGTAGTGGTGGTGCTGTTATATCTCTTGCCGGCATGCTTCTAACAGGCGGAAGTGTTGGTGGTGGTAGGCTAAGACAGAAGCCTCAATTAACTGGCTGCGAGCCGTTCGATGTGTACACGAAACCTTTTGCCCTATGA

Protein Analysis

381

Amino Acids

42.06

Weight (kDa)

8.17

Isoelectric Point (pI)

52.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C14 PF00656 97 - 329 5.4e-31 Caspase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000588)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02170
fragaria_vesca FvH4_7g08970 FvH4_7g08970 FvH4_7g08970 FvH4_7g26490
malus_domestica MD01G1173500.v1.1 MD02G1221900.v1.1 MD05G1044000.v1.1 MD07G1094600.v1.1 MD07G1240400.v1.1 MD07G1240500.v1.1 MD10G1051100.v1.1 MD10G1051200.v1.1
prunus_persica Prupe.2G118900_v2.0.a1 Prupe.2G269200_v2.0.a1 Prupe.8G059400_v2.0.a1
pyrus_communis pycom01g18530 pycom01g18540 pycom02g18780 pycom05g03650 pycom07g07790 pycom07g21680 pycom10g03590
rosa_chinensis RchiOBHm_Chr1g0344331 RchiOBHm_Chr1g0344461 RchiOBHm_Chr1g0344571 RchiOBHm_Chr1g0344661 RchiOBHm_Chr1g0344751 RchiOBHm_Chr1g0344811 RchiOBHm_Chr1g0344881 RchiOBHm_Chr1g0344901 RchiOBHm_Chr1g0344911 RchiOBHm_Chr1g0373091
rosa_laevigata RLG00000028867 RLG00000028877 RLG00000028880 RLG00000028885 RLG00000028898
rosa_multiflora Rmu_co8105290.1_g000001 Rmu_co8220756.1_g000001 Rmu_co8317965.1_g000001 Rmu_co8413861.1_g000001 Rmu_co8518347.1_g000001 Rmu_sc0000390.1_g000001 Rmu_sc0005177.1_g000002 Rmu_sc0007317.1_g000002 Rmu_sc0010876.1_g000003 Rmu_sc0013714.1_g000001 Rmu_sc0029558.1_g000002 Rmu_ssc0000167.1_g000004
rosa_roxburghii Rroxscaffold_4G00284470 Rroxscaffold_4G00309530 Rroxscaffold_4G00309580 Rroxscaffold_4G00309590 Rroxscaffold_4G00309620 Rroxscaffold_4G00309630 Rroxscaffold_4G00309720 Rroxscaffold_4G00309880
rosa_rugosa Rorug01G0173200 Rorug01G0173200 Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug01G0174900 Rorug01G0376100
rosa_samantha Rh1CG175000 Rh1CG176200 Rh1CG177200 Rh1CG177800 Rh1CG177900 Rh1CG178000 Rh1CG361900 Rh1DG188500 Rh1DG188700 Rh1DG189400 Rh1DG379400
rosa_wichuraiana Rw1G015680 Rw1G015800 Rw1G015810 Rw1G015870 Rw1G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 224
AccB1I GGYRCC 2 cut(s) 722, 896
AccBSI CCGCTC 1 cut(s) 190
AccI GTMKAC 1 cut(s) 64
AccII CGCG 1 cut(s) 166
AclWI GGATC 1 cut(s) 792
AcoI YGGCCR 1 cut(s) 143
AcuI CTGAAG 1 cut(s) 450
AcyI GRCGYC 1 cut(s) 360
AfaI GTAC 4 cut(s) 161, 207, 498, 1124
AfiI CCNNNNNNNGG 2 cut(s) 800, 951
AgsI TTSAA 2 cut(s) 397, 620
AhlI ACTAGT 1 cut(s) 56
AjnI CCWGG 2 cut(s) 262, 624
AluBI AGCT 4 cut(s) 95, 340, 691, 957
AluI AGCT 4 cut(s) 95, 340, 691, 957
Alw21I GWGCWC 1 cut(s) 342
Alw26I GTCTC 1 cut(s) 869
AlwI GGATC 1 cut(s) 792
Ama87I CYCGRG 1 cut(s) 328
AoxI GGCC 3 cut(s) 44, 143, 668
ApeKI GCWGC 6 cut(s) 95, 139, 148, 656, 941, 1104
AspS9I GGNCC 2 cut(s) 266, 669
AsuC2I CCSGG 1 cut(s) 178
AsuHPI GGTGA 5 cut(s) 252, 313, 379, 434, 584
AsuII TTCGAA 1 cut(s) 985
AvaI CYCGRG 1 cut(s) 328
AvaII GGWCC 1 cut(s) 266
BaeI ACNNNNGTAYC 2 cut(s) 143, 176
BanI GGYRCC 2 cut(s) 722, 896
BanII GRGCYC 1 cut(s) 342
Bbv12I GWGCWC 1 cut(s) 342
BbvI GCAGC 6 cut(s) 82, 126, 135, 668, 953, 1091
BccI CCATC 4 cut(s) 563, 578, 805, 867
BceAI ACGGC 2 cut(s) 569, 1096
BciT130I CCWGG 2 cut(s) 264, 626
BcnI CCSGG 1 cut(s) 178
BcoDI GTCTC 1 cut(s) 869
BcuI ACTAGT 1 cut(s) 56
BfaI CTAG 1 cut(s) 57
BisI GCNGC 8 cut(s) 96, 140, 143, 146, 149, 657, 942, 1105
BlsI GCNGC 8 cut(s) 97, 141, 144, 147, 150, 658, 943, 1106
Bme1390I CCNGG 3 cut(s) 178, 264, 626
Bme18I GGWCC 1 cut(s) 266
BmeT110I CYCGRG 1 cut(s) 328
BmgT120I GGNCC 2 cut(s) 266, 669
BmiI GGNNCC 2 cut(s) 724, 898
BmrFI CCNGG 3 cut(s) 178, 264, 626
BmsI GCATC 1 cut(s) 360
Bpu14I TTCGAA 1 cut(s) 985
BpuMI CCSGG 1 cut(s) 178
BsaBI GATNNNNATC 3 cut(s) 117, 508, 858
BsaHI GRCGYC 1 cut(s) 360
BsaJI CCNNGG 2 cut(s) 624, 625
BsaWI WCCGGW 1 cut(s) 539
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 800, 951
Bse118I RCCGGY 1 cut(s) 1037
Bse1I ACTGG 3 cut(s) 157, 735, 1105
Bse8I GATNNNNATC 3 cut(s) 117, 508, 858
BseBI CCWGG 2 cut(s) 264, 626
BseDI CCNNGG 2 cut(s) 624, 625
BseGI GGATG 4 cut(s) 129, 340, 509, 915
BseJI GATNNNNATC 3 cut(s) 117, 508, 858
BseLI CCNNNNNNNGG 2 cut(s) 800, 951
BseNI ACTGG 3 cut(s) 157, 735, 1105
BseRI GAGGAG 1 cut(s) 371
BseX3I CGGCCG 1 cut(s) 143
BseXI GCAGC 6 cut(s) 82, 126, 135, 668, 953, 1091
BsgI GTGCAG 1 cut(s) 222
Bsh1236I CGCG 1 cut(s) 166
Bsh1285I CGRYCG 1 cut(s) 146
BshFI GGCC 3 cut(s) 46, 145, 670
BshNI GGYRCC 2 cut(s) 722, 896
BsiEI CGRYCG 1 cut(s) 146
BsiHKAI GWGCWC 1 cut(s) 342
BsiHKCI CYCGRG 1 cut(s) 328
BsiSI CCGG 3 cut(s) 177, 540, 1038
BslFI GGGAC 2 cut(s) 530, 591
BslI CCNNNNNNNGG 2 cut(s) 800, 951
BsmAI GTCTC 1 cut(s) 869
BsmFI GGGAC 2 cut(s) 530, 591
BsnI GGCC 3 cut(s) 46, 145, 670
BsoBI CYCGRG 1 cut(s) 328
Bsp119I TTCGAA 1 cut(s) 985
Bsp1286I GDGCHC 1 cut(s) 342
Bsp1407I TGTACA 2 cut(s) 496, 1122
Bsp143I GATC 2 cut(s) 303, 784
BspANI GGCC 3 cut(s) 46, 145, 670
BspFNI CGCG 1 cut(s) 166
BspLI GGNNCC 2 cut(s) 724, 898
BspPI GGATC 1 cut(s) 792
BspT104I TTCGAA 1 cut(s) 985
BspT107I GGYRCC 2 cut(s) 722, 896
BsrBI CCGCTC 1 cut(s) 190
BsrFI RCCGGY 1 cut(s) 1037
BsrGI TGTACA 2 cut(s) 496, 1122
BsrI ACTGG 3 cut(s) 157, 735, 1105
BssAI RCCGGY 1 cut(s) 1037
BssECI CCNNGG 2 cut(s) 624, 625
BssMI GATC 2 cut(s) 303, 784
BssNI GRCGYC 1 cut(s) 360
Bst2UI CCWGG 2 cut(s) 264, 626
Bst4CI ACNGT 1 cut(s) 69
BstACI GRCGYC 1 cut(s) 360
BstAUI TGTACA 2 cut(s) 496, 1122
BstBI TTCGAA 1 cut(s) 985
BstC8I GCNNGC 5 cut(s) 244, 371, 1039, 1043, 1109
BstDEI CTNAG 1 cut(s) 1079
BstENI CCTNNNNNAGG 1 cut(s) 798
BstF5I GGATG 4 cut(s) 129, 340, 509, 915
BstFNI CGCG 1 cut(s) 166
BstKTI GATC 2 cut(s) 306, 787
BstMAI GTCTC 1 cut(s) 869
BstMBI GATC 2 cut(s) 303, 784
BstMCI CGRYCG 1 cut(s) 146
BstMWI GCNNNNNNNGC 4 cut(s) 145, 148, 187, 280
BstNI CCWGG 2 cut(s) 264, 626
BstNSI RCATGY 3 cut(s) 242, 373, 1045
BstSCI CCNGG 3 cut(s) 176, 262, 624
BstUI CGCG 1 cut(s) 166
BstV1I GCAGC 6 cut(s) 82, 126, 135, 668, 953, 1091
BstZI CGGCCG 1 cut(s) 143
BsuRI GGCC 3 cut(s) 46, 145, 670
BtsCI GGATG 4 cut(s) 129, 340, 509, 915
BtsIMutI CAGTG 1 cut(s) 426
Cac8I GCNNGC 5 cut(s) 244, 371, 1039, 1043, 1109
CciNI GCGGCCGC 1 cut(s) 143
Cfr10I RCCGGY 1 cut(s) 1037
Cfr13I GGNCC 2 cut(s) 266, 669
CseI GACGC 2 cut(s) 155, 368
Csp6I GTAC 4 cut(s) 160, 206, 497, 1123
CviQI GTAC 4 cut(s) 160, 206, 497, 1123
DdeI CTNAG 1 cut(s) 1079
DpnI GATC 2 cut(s) 305, 786
DpnII GATC 2 cut(s) 303, 784
EaeI YGGCCR 1 cut(s) 143
EagI CGGCCG 1 cut(s) 143
EciI GGCGGA 2 cut(s) 304, 1071
Ecl136II GAGCTC 1 cut(s) 340
EclXI CGGCCG 1 cut(s) 143
Eco24I GRGCYC 1 cut(s) 342
Eco32I GATATC 1 cut(s) 315
Eco47I GGWCC 1 cut(s) 266
Eco52I CGGCCG 1 cut(s) 143
Eco53kI GAGCTC 1 cut(s) 340
Eco57I CTGAAG 1 cut(s) 450
Eco88I CYCGRG 1 cut(s) 328
EcoICRI GAGCTC 1 cut(s) 340
EcoNI CCTNNNNNAGG 1 cut(s) 798
EcoRII CCWGG 2 cut(s) 262, 624
EcoRV GATATC 1 cut(s) 315
EcoT22I ATGCAT 1 cut(s) 371
EcoT38I GRGCYC 1 cut(s) 342
FaqI GGGAC 2 cut(s) 530, 591
FauI CCCGC 3 cut(s) 171, 195, 302
FauNDI CATATG 1 cut(s) 949
FblI GTMKAC 1 cut(s) 64
Fnu4HI GCNGC 8 cut(s) 96, 140, 143, 146, 149, 657, 942, 1105
FokI GGATG 4 cut(s) 116, 347, 516, 902
FriOI GRGCYC 1 cut(s) 342
Fsp4HI GCNGC 8 cut(s) 96, 140, 143, 146, 149, 657, 942, 1105
FspBI CTAG 1 cut(s) 57
GluI GCNGC 8 cut(s) 96, 140, 143, 146, 149, 657, 942, 1105
HaeIII GGCC 3 cut(s) 46, 145, 670
HapII CCGG 3 cut(s) 177, 540, 1038
HgaI GACGC 2 cut(s) 155, 368
Hin1I GRCGYC 1 cut(s) 360
HincII GTYRAC 1 cut(s) 65
HindII GTYRAC 1 cut(s) 65
HindIII AAGCTT 1 cut(s) 689
HinfI GANTC 6 cut(s) 18, 107, 410, 454, 518, 707
HpaII CCGG 3 cut(s) 177, 540, 1038
HphI GGTGA 5 cut(s) 252, 313, 379, 434, 584
Hpy166II GTNNAC 6 cut(s) 65, 551, 827, 935, 1123, 1125
Hpy188I TCNGA 1 cut(s) 112
Hpy188III TCNNGA 2 cut(s) 15, 404
Hpy8I GTNNAC 6 cut(s) 65, 551, 827, 935, 1123, 1125
Hpy99I CGWCG 2 cut(s) 126, 171
HpyAV CCTTC 4 cut(s) 109, 289, 471, 533
HpyCH4III ACNGT 1 cut(s) 69
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 8 cut(s) 4, 203, 283, 351, 369, 656, 698, 750
HpyF10VI GCNNNNNNNGC 4 cut(s) 145, 148, 187, 280
HpyF3I CTNAG 1 cut(s) 1079
HpySE526I ACGT 1 cut(s) 279
Hsp92I GRCGYC 1 cut(s) 360
KroI GCCGGC 1 cut(s) 1037
KroNI GCCGGC 1 cut(s) 1039
Kzo9I GATC 2 cut(s) 303, 784
LmnI GCTCC 2 cut(s) 195, 954
Lsp1109I GCAGC 6 cut(s) 82, 126, 135, 668, 953, 1091
LweI GCATC 1 cut(s) 360
MaeI CTAG 1 cut(s) 57
MaeII ACGT 1 cut(s) 279
MalI GATC 2 cut(s) 305, 786
MbiI CCGCTC 1 cut(s) 190
MboI GATC 2 cut(s) 303, 784
MboII GAAGA 4 cut(s) 304, 419, 443, 446
MfeI CAATTG 2 cut(s) 343, 660
MhlI GDGCHC 1 cut(s) 342
MluCI AATT 7 cut(s) 35, 343, 562, 660, 699, 831, 1094
MlyI GAGTC 2 cut(s) 116, 512
Mph1103I ATGCAT 1 cut(s) 371
MroNI GCCGGC 1 cut(s) 1037
MseI TTAA 1 cut(s) 1097
MslI CAYNNNNRTG 3 cut(s) 27, 419, 968
MspA1I CMGCKG 5 cut(s) 95, 139, 148, 274, 846
MspI CCGG 3 cut(s) 177, 540, 1038
MspR9I CCNGG 3 cut(s) 178, 264, 626
MunI CAATTG 2 cut(s) 343, 660
MvaI CCWGG 2 cut(s) 264, 626
MvnI CGCG 1 cut(s) 166
MwoI GCNNNNNNNGC 4 cut(s) 145, 148, 187, 280
NaeI GCCGGC 1 cut(s) 1039
NciI CCSGG 1 cut(s) 178
NdeI CATATG 1 cut(s) 949
NdeII GATC 2 cut(s) 303, 784
NgoMIV GCCGGC 1 cut(s) 1037
NlaIV GGNNCC 2 cut(s) 724, 898
NotI GCGGCCGC 1 cut(s) 143
NsiI ATGCAT 1 cut(s) 371
NspI RCATGY 3 cut(s) 242, 373, 1045
NspV TTCGAA 1 cut(s) 985
PaeI GCATGC 2 cut(s) 373, 1045
PaeR7I CTCGAG 1 cut(s) 328
PasI CCCWGGG 1 cut(s) 625
PcsI WCGNNNNNNNCGW 1 cut(s) 130
PdiI GCCGGC 1 cut(s) 1039
PfeI GAWTC 4 cut(s) 18, 410, 454, 707
PkrI GCNGC 8 cut(s) 97, 141, 144, 147, 150, 658, 943, 1106
PleI GAGTC 2 cut(s) 115, 512
PpsI GAGTC 2 cut(s) 115, 512
PsiI TTATAA 1 cut(s) 224
Psp124BI GAGCTC 1 cut(s) 342
Psp6I CCWGG 2 cut(s) 262, 624
PspGI CCWGG 2 cut(s) 262, 624
PspN4I GGNNCC 2 cut(s) 724, 898
PspPI GGNCC 2 cut(s) 266, 669
PspXI VCTCGAGB 1 cut(s) 328
PvuII CAGCTG 1 cut(s) 95
RsaI GTAC 4 cut(s) 161, 207, 498, 1124
RsaNI GTAC 4 cut(s) 160, 206, 497, 1123
RseI CAYNNNNRTG 3 cut(s) 27, 419, 968
SacI GAGCTC 1 cut(s) 342
SalI GTCGAC 1 cut(s) 63
SaqAI TTAA 1 cut(s) 1097
SatI GCNGC 8 cut(s) 96, 140, 143, 146, 149, 657, 942, 1105
Sau3AI GATC 2 cut(s) 303, 784
Sau96I GGNCC 2 cut(s) 266, 669
SchI GAGTC 2 cut(s) 116, 512
ScrFI CCNGG 3 cut(s) 178, 264, 626
SduI GDGCHC 1 cut(s) 342
SfaNI GCATC 1 cut(s) 360
Sfr274I CTCGAG 1 cut(s) 328
SfuI TTCGAA 1 cut(s) 985
SinI GGWCC 1 cut(s) 266
SlaI CTCGAG 1 cut(s) 328
SmiMI CAYNNNNRTG 3 cut(s) 27, 419, 968
SmlI CTYRAG 1 cut(s) 328
SmoI CTYRAG 1 cut(s) 328
SpeI ACTAGT 1 cut(s) 56
SphI GCATGC 2 cut(s) 373, 1045
Sse9I AATT 7 cut(s) 35, 343, 562, 660, 699, 831, 1094
SspMI CTAG 1 cut(s) 57
SstI GAGCTC 1 cut(s) 342
StyD4I CCNGG 3 cut(s) 176, 262, 624
TaaI ACNGT 1 cut(s) 69
TaiI ACGT 1 cut(s) 282
TaqI TCGA 6 cut(s) 64, 329, 790, 927, 985, 1116
TasI AATT 7 cut(s) 35, 343, 562, 660, 699, 831, 1094
TatI WGTACW 2 cut(s) 496, 1122
TauI GCSGC 2 cut(s) 145, 148
TfiI GAWTC 4 cut(s) 18, 410, 454, 707
Tru1I TTAA 1 cut(s) 1097
Tru9I TTAA 1 cut(s) 1097
TscAI CASTG 1 cut(s) 433
TseI GCWGC 6 cut(s) 95, 139, 148, 656, 941, 1104
TspDTI ATGAA 4 cut(s) 591, 609, 683, 904
TspGWI ACGGA 1 cut(s) 122
TspRI CASTG 1 cut(s) 433
VpaK11BI GGWCC 1 cut(s) 266
XagI CCTNNNNNAGG 1 cut(s) 798
XceI RCATGY 3 cut(s) 242, 373, 1045
XcmI CCANNNNNNNNNTGG 3 cut(s) 260, 804, 988
XhoI CTCGAG 1 cut(s) 328
XmiI GTMKAC 1 cut(s) 64
XspI CTAG 1 cut(s) 57
Zsp2I ATGCAT 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.