RchiOBHm_Chr1g0344331

Metacaspase-1-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
36649243 .. 36651355
2113 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57079

Sequence Viewer

Length: 1116 bp
ATGATGATGAGCAATTATGGAGGCCAACGACTTCTAGTGGTCGACTGTTGCTATTGCCAAACCCAAATCCAGCTGCCTTCTGTGAGTCCGATATACATCGTCGGCACATCCGTCCGCTGCGGCCGCTGCTATGCCAGTACCCGCGTCGCCTCTCCGGGCTTCCCCCGCTCCCCCCATAGTGCCGTACCCTACTATGCCCTTATAAACCCACCACCACATGCCTGCTTCCCCCATACATCACCAGGACCTCCGCCGAACGTGCATGGGCGGAAGAAGGCGGTCATCTGCGGGATATCGTATAGAAACTCGAGGGATGAGCTCAATTGTTGCATCAATGACGCCAAATGCATGCGGTATCTCCTCATCACCAAGTTCAAGTTTCCAGAAGATTCCATTCTCATGCTCACTGAAGAAGAAACTCACCCACATAAGATTCCATATAAAAACAACATTAGAAGGGCATTATGTTGGCTTGTACAAGGATGTCAATCGGGGGACTCCCTTCTGTTTTACTTCTCCGGTCATGGTTCACGGCAGAGGAATTATGATGGTGATGAAGTTGATGGATATGATGAAACCCTTTGTCCCCTTGACTTTGAAACCCAGGGTATGATTGTTGATGATGAGATAAATGCAGCAATTGTTAGGCCCATTCCCCATGGGGTCAAGCTTCATGCAATTATAGATTCTTGTCATAGTGGCACCATACTGGATTTGCCATGCCTTTGCAGAATGGACAGGGGTGGAAAATATGTATGGGAGGATCATCGACCTCCATCAGGCGTATGGAAAGGAACAAGTGGTGGACAAGTTATATCTATCAGCGGTTGTGATGACCATCAAACCTCTGCAGAGACATCAATCACATCAACAGGTGCCATGACTTTCTCTTTCATCCAAGCAATCGAGCGTGGACAGGCAGCCACATATGGGAGCTTACTCATATCTATGAGTAATACCATTCGAAGTATGGGTTCTGGTGGTGGTGGTGGTGGTACATCTCTTGCCGGCATGCTTCTAACAGGCGGAAGTGTTGGTGGTGGTAGGCTAAGACAGAAGCCTCAATTAACTGGCTGCGAGCTGTTCGATGTGTACACGAAACCTTTTGCCCTATGA

Protein Analysis

371

Amino Acids

40.35

Weight (kDa)

7.49

Isoelectric Point (pI)

46.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C14 PF00656 90 - 358 5.9e-31 Caspase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000588)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02170
fragaria_vesca FvH4_7g08970 FvH4_7g08970 FvH4_7g08970 FvH4_7g26490
malus_domestica MD01G1173500.v1.1 MD02G1221900.v1.1 MD05G1044000.v1.1 MD07G1094600.v1.1 MD07G1240400.v1.1 MD07G1240500.v1.1 MD10G1051100.v1.1 MD10G1051200.v1.1
prunus_persica Prupe.2G118900_v2.0.a1 Prupe.2G269200_v2.0.a1 Prupe.8G059400_v2.0.a1
pyrus_communis pycom01g18530 pycom01g18540 pycom02g18780 pycom05g03650 pycom07g07790 pycom07g21680 pycom10g03590
rosa_chinensis RchiOBHm_Chr1g0344331 RchiOBHm_Chr1g0344461 RchiOBHm_Chr1g0344571 RchiOBHm_Chr1g0344661 RchiOBHm_Chr1g0344751 RchiOBHm_Chr1g0344811 RchiOBHm_Chr1g0344881 RchiOBHm_Chr1g0344901 RchiOBHm_Chr1g0344911 RchiOBHm_Chr1g0373091
rosa_laevigata RLG00000028867 RLG00000028877 RLG00000028880 RLG00000028885 RLG00000028898
rosa_multiflora Rmu_co8105290.1_g000001 Rmu_co8220756.1_g000001 Rmu_co8317965.1_g000001 Rmu_co8413861.1_g000001 Rmu_co8518347.1_g000001 Rmu_sc0000390.1_g000001 Rmu_sc0005177.1_g000002 Rmu_sc0007317.1_g000002 Rmu_sc0010876.1_g000003 Rmu_sc0013714.1_g000001 Rmu_sc0029558.1_g000002 Rmu_ssc0000167.1_g000004
rosa_roxburghii Rroxscaffold_4G00284470 Rroxscaffold_4G00309530 Rroxscaffold_4G00309580 Rroxscaffold_4G00309590 Rroxscaffold_4G00309620 Rroxscaffold_4G00309630 Rroxscaffold_4G00309720 Rroxscaffold_4G00309880
rosa_rugosa Rorug01G0173200 Rorug01G0173200 Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug01G0174900 Rorug01G0376100
rosa_samantha Rh1CG175000 Rh1CG176200 Rh1CG177200 Rh1CG177800 Rh1CG177900 Rh1CG178000 Rh1CG361900 Rh1DG188500 Rh1DG188700 Rh1DG189400 Rh1DG379400
rosa_wichuraiana Rw1G015680 Rw1G015800 Rw1G015810 Rw1G015870 Rw1G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 203
AccB1I GGYRCC 2 cut(s) 701, 875
AccBSI CCGCTC 1 cut(s) 168
AccI GTMKAC 1 cut(s) 42
AccII CGCG 1 cut(s) 144
AclWI GGATC 1 cut(s) 771
AcoI YGGCCR 1 cut(s) 121
AcuI CTGAAG 1 cut(s) 429
AcyI GRCGYC 1 cut(s) 339
AfaI GTAC 5 cut(s) 139, 186, 477, 997, 1094
AfiI CCNNNNNNNGG 2 cut(s) 779, 930
AgsI TTSAA 2 cut(s) 376, 599
AjnI CCWGG 2 cut(s) 241, 603
AluBI AGCT 5 cut(s) 73, 319, 670, 936, 1081
AluI AGCT 5 cut(s) 73, 319, 670, 936, 1081
Alw21I GWGCWC 1 cut(s) 321
Alw26I GTCTC 1 cut(s) 848
AlwI GGATC 1 cut(s) 771
Ama87I CYCGRG 1 cut(s) 307
AoxI GGCC 3 cut(s) 22, 121, 647
ApeKI GCWGC 6 cut(s) 73, 117, 126, 635, 920, 1074
AspS9I GGNCC 2 cut(s) 245, 648
AsuC2I CCSGG 1 cut(s) 156
AsuHPI GGTGA 4 cut(s) 231, 358, 413, 563
AsuII TTCGAA 1 cut(s) 964
AvaI CYCGRG 1 cut(s) 307
AvaII GGWCC 1 cut(s) 245
BanI GGYRCC 2 cut(s) 701, 875
BanII GRGCYC 1 cut(s) 321
Bbv12I GWGCWC 1 cut(s) 321
BbvI GCAGC 6 cut(s) 60, 104, 113, 647, 932, 1061
BccI CCATC 4 cut(s) 542, 557, 784, 846
BceAI ACGGC 2 cut(s) 167, 548
BciT130I CCWGG 2 cut(s) 243, 605
BcnI CCSGG 1 cut(s) 156
BcoDI GTCTC 1 cut(s) 848
BfaI CTAG 1 cut(s) 35
BfmI CTRYAG 1 cut(s) 849
BisI GCNGC 8 cut(s) 74, 118, 121, 124, 127, 636, 921, 1075
BlsI GCNGC 8 cut(s) 75, 119, 122, 125, 128, 637, 922, 1076
Bme1390I CCNGG 3 cut(s) 156, 243, 605
Bme18I GGWCC 1 cut(s) 245
BmeT110I CYCGRG 1 cut(s) 307
BmgT120I GGNCC 2 cut(s) 245, 648
BmiI GGNNCC 2 cut(s) 703, 877
BmrFI CCNGG 3 cut(s) 156, 243, 605
BmsI GCATC 1 cut(s) 339
Bpu14I TTCGAA 1 cut(s) 964
BpuMI CCSGG 1 cut(s) 156
BsaBI GATNNNNATC 3 cut(s) 95, 487, 837
BsaHI GRCGYC 1 cut(s) 339
BsaJI CCNNGG 3 cut(s) 603, 604, 658
BsaWI WCCGGW 1 cut(s) 518
Bsc4I CCNNNNNNNGG 2 cut(s) 779, 930
Bse118I RCCGGY 1 cut(s) 1007
Bse1I ACTGG 3 cut(s) 135, 714, 1075
Bse8I GATNNNNATC 3 cut(s) 95, 487, 837
BseBI CCWGG 2 cut(s) 243, 605
BseDI CCNNGG 3 cut(s) 603, 604, 658
BseGI GGATG 4 cut(s) 107, 319, 488, 894
BseJI GATNNNNATC 3 cut(s) 95, 487, 837
BseLI CCNNNNNNNGG 2 cut(s) 779, 930
BseNI ACTGG 3 cut(s) 135, 714, 1075
BseRI GAGGAG 1 cut(s) 350
BseX3I CGGCCG 1 cut(s) 121
BseXI GCAGC 6 cut(s) 60, 104, 113, 647, 932, 1061
Bsh1236I CGCG 1 cut(s) 144
Bsh1285I CGRYCG 1 cut(s) 124
BshFI GGCC 3 cut(s) 24, 123, 649
BshNI GGYRCC 2 cut(s) 701, 875
BsiEI CGRYCG 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 321
BsiHKCI CYCGRG 1 cut(s) 307
BsiSI CCGG 3 cut(s) 155, 519, 1008
BslFI GGGAC 2 cut(s) 509, 570
BslI CCNNNNNNNGG 2 cut(s) 779, 930
BsmAI GTCTC 1 cut(s) 848
BsmFI GGGAC 2 cut(s) 509, 570
BsnI GGCC 3 cut(s) 24, 123, 649
BsoBI CYCGRG 1 cut(s) 307
Bsp119I TTCGAA 1 cut(s) 964
Bsp1286I GDGCHC 1 cut(s) 321
Bsp1407I TGTACA 2 cut(s) 475, 1092
Bsp143I GATC 1 cut(s) 763
Bsp19I CCATGG 1 cut(s) 658
BspANI GGCC 3 cut(s) 24, 123, 649
BspFNI CGCG 1 cut(s) 144
BspLI GGNNCC 2 cut(s) 703, 877
BspMAI CTGCAG 1 cut(s) 853
BspPI GGATC 1 cut(s) 771
BspT104I TTCGAA 1 cut(s) 964
BspT107I GGYRCC 2 cut(s) 701, 875
BsrBI CCGCTC 1 cut(s) 168
BsrFI RCCGGY 1 cut(s) 1007
BsrGI TGTACA 2 cut(s) 475, 1092
BsrI ACTGG 3 cut(s) 135, 714, 1075
BssAI RCCGGY 1 cut(s) 1007
BssECI CCNNGG 3 cut(s) 603, 604, 658
BssMI GATC 1 cut(s) 763
BssNI GRCGYC 1 cut(s) 339
BssT1I CCWWGG 1 cut(s) 658
Bst2UI CCWGG 2 cut(s) 243, 605
Bst4CI ACNGT 1 cut(s) 47
BstACI GRCGYC 1 cut(s) 339
BstAUI TGTACA 2 cut(s) 475, 1092
BstBI TTCGAA 1 cut(s) 964
BstC8I GCNNGC 5 cut(s) 223, 350, 1009, 1013, 1079
BstDEI CTNAG 1 cut(s) 1049
BstDSI CCRYGG 1 cut(s) 658
BstENI CCTNNNNNAGG 1 cut(s) 777
BstF5I GGATG 4 cut(s) 107, 319, 488, 894
BstFNI CGCG 1 cut(s) 144
BstKTI GATC 1 cut(s) 766
BstMAI GTCTC 1 cut(s) 848
BstMBI GATC 1 cut(s) 763
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 4 cut(s) 123, 126, 165, 259
BstNI CCWGG 2 cut(s) 243, 605
BstNSI RCATGY 3 cut(s) 221, 352, 1015
BstSCI CCNGG 3 cut(s) 154, 241, 603
BstSFI CTRYAG 1 cut(s) 849
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 6 cut(s) 60, 104, 113, 647, 932, 1061
BstZI CGGCCG 1 cut(s) 121
BsuRI GGCC 3 cut(s) 24, 123, 649
BtgI CCRYGG 1 cut(s) 658
BtsCI GGATG 4 cut(s) 107, 319, 488, 894
BtsIMutI CAGTG 1 cut(s) 405
Cac8I GCNNGC 5 cut(s) 223, 350, 1009, 1013, 1079
CciNI GCGGCCGC 1 cut(s) 121
Cfr10I RCCGGY 1 cut(s) 1007
Cfr13I GGNCC 2 cut(s) 245, 648
CseI GACGC 2 cut(s) 133, 347
Csp6I GTAC 5 cut(s) 138, 185, 476, 996, 1093
CviQI GTAC 5 cut(s) 138, 185, 476, 996, 1093
DdeI CTNAG 1 cut(s) 1049
DpnI GATC 1 cut(s) 765
DpnII GATC 1 cut(s) 763
EaeI YGGCCR 1 cut(s) 121
EagI CGGCCG 1 cut(s) 121
EciI GGCGGA 3 cut(s) 240, 283, 1041
Ecl136II GAGCTC 1 cut(s) 319
EclXI CGGCCG 1 cut(s) 121
Eco130I CCWWGG 1 cut(s) 658
Eco24I GRGCYC 1 cut(s) 321
Eco32I GATATC 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 245
Eco52I CGGCCG 1 cut(s) 121
Eco53kI GAGCTC 1 cut(s) 319
Eco57I CTGAAG 1 cut(s) 429
Eco88I CYCGRG 1 cut(s) 307
EcoICRI GAGCTC 1 cut(s) 319
EcoNI CCTNNNNNAGG 1 cut(s) 777
EcoO109I RGGNCCY 1 cut(s) 245
EcoRII CCWGG 2 cut(s) 241, 603
EcoRV GATATC 1 cut(s) 294
EcoT14I CCWWGG 1 cut(s) 658
EcoT22I ATGCAT 1 cut(s) 350
EcoT38I GRGCYC 1 cut(s) 321
ErhI CCWWGG 1 cut(s) 658
FaqI GGGAC 2 cut(s) 509, 570
FauI CCCGC 3 cut(s) 149, 173, 281
FauNDI CATATG 1 cut(s) 928
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 8 cut(s) 74, 118, 121, 124, 127, 636, 921, 1075
FokI GGATG 4 cut(s) 94, 326, 495, 881
FriOI GRGCYC 1 cut(s) 321
Fsp4HI GCNGC 8 cut(s) 74, 118, 121, 124, 127, 636, 921, 1075
FspBI CTAG 1 cut(s) 35
GluI GCNGC 8 cut(s) 74, 118, 121, 124, 127, 636, 921, 1075
HaeIII GGCC 3 cut(s) 24, 123, 649
HapII CCGG 3 cut(s) 155, 519, 1008
HgaI GACGC 2 cut(s) 133, 347
Hin1I GRCGYC 1 cut(s) 339
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HindIII AAGCTT 1 cut(s) 668
HinfI GANTC 5 cut(s) 85, 389, 433, 497, 686
HpaII CCGG 3 cut(s) 155, 519, 1008
HphI GGTGA 4 cut(s) 231, 358, 413, 563
Hpy166II GTNNAC 6 cut(s) 43, 530, 806, 914, 1093, 1095
Hpy188I TCNGA 1 cut(s) 90
Hpy188III TCNNGA 1 cut(s) 383
Hpy8I GTNNAC 6 cut(s) 43, 530, 806, 914, 1093, 1095
Hpy99I CGWCG 2 cut(s) 104, 149
HpyAV CCTTC 4 cut(s) 87, 268, 450, 512
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 7 cut(s) 262, 330, 348, 635, 677, 729, 851
HpyF10VI GCNNNNNNNGC 4 cut(s) 123, 126, 165, 259
HpyF3I CTNAG 1 cut(s) 1049
HpySE526I ACGT 1 cut(s) 258
Hsp92I GRCGYC 1 cut(s) 339
KroI GCCGGC 1 cut(s) 1007
KroNI GCCGGC 1 cut(s) 1009
Kzo9I GATC 1 cut(s) 763
LmnI GCTCC 2 cut(s) 173, 933
Lsp1109I GCAGC 6 cut(s) 60, 104, 113, 647, 932, 1061
LweI GCATC 1 cut(s) 339
MaeI CTAG 1 cut(s) 35
MaeII ACGT 1 cut(s) 258
MalI GATC 1 cut(s) 765
MbiI CCGCTC 1 cut(s) 168
MboI GATC 1 cut(s) 763
MboII GAAGA 4 cut(s) 283, 398, 422, 425
MfeI CAATTG 2 cut(s) 322, 639
MhlI GDGCHC 1 cut(s) 321
MluCI AATT 6 cut(s) 13, 322, 541, 639, 678, 1064
MlyI GAGTC 2 cut(s) 94, 491
Mph1103I ATGCAT 1 cut(s) 350
MroNI GCCGGC 1 cut(s) 1007
MseI TTAA 1 cut(s) 1067
MslI CAYNNNNRTG 2 cut(s) 398, 947
MspA1I CMGCKG 4 cut(s) 73, 117, 126, 825
MspI CCGG 3 cut(s) 155, 519, 1008
MspR9I CCNGG 3 cut(s) 156, 243, 605
MunI CAATTG 2 cut(s) 322, 639
MvaI CCWGG 2 cut(s) 243, 605
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 4 cut(s) 123, 126, 165, 259
NaeI GCCGGC 1 cut(s) 1009
NciI CCSGG 1 cut(s) 156
NcoI CCATGG 1 cut(s) 658
NdeI CATATG 1 cut(s) 928
NdeII GATC 1 cut(s) 763
NgoMIV GCCGGC 1 cut(s) 1007
NlaIV GGNNCC 2 cut(s) 703, 877
NotI GCGGCCGC 1 cut(s) 121
NsiI ATGCAT 1 cut(s) 350
NspI RCATGY 3 cut(s) 221, 352, 1015
NspV TTCGAA 1 cut(s) 964
PaeI GCATGC 2 cut(s) 352, 1015
PaeR7I CTCGAG 1 cut(s) 307
PasI CCCWGGG 1 cut(s) 604
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PdiI GCCGGC 1 cut(s) 1009
PfeI GAWTC 3 cut(s) 389, 433, 686
PkrI GCNGC 8 cut(s) 75, 119, 122, 125, 128, 637, 922, 1076
PleI GAGTC 2 cut(s) 93, 491
PpsI GAGTC 2 cut(s) 93, 491
PpuMI RGGWCCY 1 cut(s) 245
PsiI TTATAA 1 cut(s) 203
Psp124BI GAGCTC 1 cut(s) 321
Psp5II RGGWCCY 1 cut(s) 245
Psp6I CCWGG 2 cut(s) 241, 603
PspGI CCWGG 2 cut(s) 241, 603
PspN4I GGNNCC 2 cut(s) 703, 877
PspPI GGNCC 2 cut(s) 245, 648
PspPPI RGGWCCY 1 cut(s) 245
PspXI VCTCGAGB 1 cut(s) 307
PstI CTGCAG 1 cut(s) 853
PvuII CAGCTG 1 cut(s) 73
RsaI GTAC 5 cut(s) 139, 186, 477, 997, 1094
RsaNI GTAC 5 cut(s) 138, 185, 476, 996, 1093
RseI CAYNNNNRTG 2 cut(s) 398, 947
SacI GAGCTC 1 cut(s) 321
SalI GTCGAC 1 cut(s) 41
SaqAI TTAA 1 cut(s) 1067
SatI GCNGC 8 cut(s) 74, 118, 121, 124, 127, 636, 921, 1075
Sau3AI GATC 1 cut(s) 763
Sau96I GGNCC 2 cut(s) 245, 648
SchI GAGTC 2 cut(s) 94, 491
ScrFI CCNGG 3 cut(s) 156, 243, 605
SduI GDGCHC 1 cut(s) 321
SfaNI GCATC 1 cut(s) 339
SfcI CTRYAG 1 cut(s) 849
Sfr274I CTCGAG 1 cut(s) 307
SfuI TTCGAA 1 cut(s) 964
SinI GGWCC 1 cut(s) 245
SlaI CTCGAG 1 cut(s) 307
SmiMI CAYNNNNRTG 2 cut(s) 398, 947
SmlI CTYRAG 1 cut(s) 307
SmoI CTYRAG 1 cut(s) 307
SphI GCATGC 2 cut(s) 352, 1015
Sse9I AATT 6 cut(s) 13, 322, 541, 639, 678, 1064
SspMI CTAG 1 cut(s) 35
SstI GAGCTC 1 cut(s) 321
StyD4I CCNGG 3 cut(s) 154, 241, 603
StyI CCWWGG 1 cut(s) 658
TaaI ACNGT 1 cut(s) 47
TaiI ACGT 1 cut(s) 261
TaqI TCGA 6 cut(s) 42, 308, 769, 906, 964, 1086
TasI AATT 6 cut(s) 13, 322, 541, 639, 678, 1064
TatI WGTACW 2 cut(s) 475, 1092
TauI GCSGC 2 cut(s) 123, 126
TfiI GAWTC 3 cut(s) 389, 433, 686
Tru1I TTAA 1 cut(s) 1067
Tru9I TTAA 1 cut(s) 1067
TscAI CASTG 1 cut(s) 412
TseI GCWGC 6 cut(s) 73, 117, 126, 635, 920, 1074
TspDTI ATGAA 4 cut(s) 570, 588, 662, 883
TspGWI ACGGA 1 cut(s) 100
TspRI CASTG 1 cut(s) 412
VpaK11BI GGWCC 1 cut(s) 245
XagI CCTNNNNNAGG 1 cut(s) 777
XceI RCATGY 3 cut(s) 221, 352, 1015
XcmI CCANNNNNNNNNTGG 2 cut(s) 783, 967
XhoI CTCGAG 1 cut(s) 307
XmiI GTMKAC 1 cut(s) 42
XspI CTAG 1 cut(s) 35
Zsp2I ATGCAT 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.