Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013714.1

Orthogroup ID

OG0000588

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1373

Gene Structure 1373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013714.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 707 bp

aagaagaaactgacccatataagattccatataaaagcaatattaaaggggcattacgttggcttgtacaaggatgtcaaccgggtgactcccttctgttttacttctctggtcatggttcacagctgagggagcagtatcctggtgatgaacttgatggatatgatgaaaccctttgtccccttgacgtcgaaacccagggtatgattcgtgatgattggataaatgcaacaattgttaggcccattccatatcgggtcaagcttcatgcaattatagattcttgtaatagtggcaccatgctggatttgccatggctttgcagaatggactggagtggaaactatacatgggacaaggcatcaggcgtatggaaaggagcaggtggtggagaagttatatgtatcagtggttgtgatgaccatcaaacctctgcggaaacacaatcaatgggtgtcatgacttcctgcttcatccaagcaatcaagagtggacaggcagccacatatgggagcttactctattttatgcgtaatagcattcgaagtggtggtagtggtggtggtagtggtagtggtggtgctgttacatctcttgcaggcatgcttctagcaggcggaagtgttggtggtggtgggctgagacaggagcctcaattaactgcctgcgacccattcgatgtgtacacgaaaccttttgccctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0010941 GO:0010942 GO:0016787 GO:0019538 GO:0043067 GO:0043068 GO:0043170 GO:0044238 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MORN Peptidase_C14 zf-LSD1

Protein Analysis

234

Amino Acids

25.09

Weight (kDa)

4.81

Isoelectric Point (pI)

38.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000588)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02170
fragaria_vesca	FvH4_7g08970 FvH4_7g08970 FvH4_7g08970 FvH4_7g26490
malus_domestica	MD01G1173500.v1.1 MD02G1221900.v1.1 MD05G1044000.v1.1 MD07G1094600.v1.1 MD07G1240400.v1.1 MD07G1240500.v1.1 MD10G1051100.v1.1 MD10G1051200.v1.1
prunus_persica	Prupe.2G118900_v2.0.a1 Prupe.2G269200_v2.0.a1 Prupe.8G059400_v2.0.a1
pyrus_communis	pycom01g18530 pycom01g18540 pycom02g18780 pycom05g03650 pycom07g07790 pycom07g21680 pycom10g03590
rosa_chinensis	RchiOBHm_Chr1g0344331 RchiOBHm_Chr1g0344461 RchiOBHm_Chr1g0344571 RchiOBHm_Chr1g0344661 RchiOBHm_Chr1g0344751 RchiOBHm_Chr1g0344811 RchiOBHm_Chr1g0344881 RchiOBHm_Chr1g0344901 RchiOBHm_Chr1g0344911 RchiOBHm_Chr1g0373091
rosa_laevigata	RLG00000028867 RLG00000028877 RLG00000028880 RLG00000028885 RLG00000028898
rosa_multiflora	Rmu_co8105290.1_g000001 Rmu_co8220756.1_g000001 Rmu_co8317965.1_g000001 Rmu_co8413861.1_g000001 Rmu_co8518347.1_g000001 Rmu_sc0000390.1_g000001 Rmu_sc0005177.1_g000002 Rmu_sc0007317.1_g000002 Rmu_sc0010876.1_g000003 Rmu_sc0013714.1_g000001 Rmu_sc0029558.1_g000002 Rmu_ssc0000167.1_g000004
rosa_roxburghii	Rroxscaffold_4G00284470 Rroxscaffold_4G00309530 Rroxscaffold_4G00309580 Rroxscaffold_4G00309590 Rroxscaffold_4G00309620 Rroxscaffold_4G00309630 Rroxscaffold_4G00309720 Rroxscaffold_4G00309880
rosa_rugosa	Rorug01G0173200 Rorug01G0173200 Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug01G0174900 Rorug01G0376100
rosa_samantha	Rh1CG175000 Rh1CG176200 Rh1CG177200 Rh1CG177800 Rh1CG177900 Rh1CG178000 Rh1CG361900 Rh1DG188500 Rh1DG188700 Rh1DG189400 Rh1DG379400
rosa_wichuraiana	Rw1G015680 Rw1G015800 Rw1G015810 Rw1G015870 Rw1G033900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	373
AatII	GACGTC	1 cut(s)	191
Acc36I	ACCTGC	1 cut(s)	373
AccB1I	GGYRCC	1 cut(s)	295
AciI	CCGC	2 cut(s)	436, 617
AcyI	GRCGYC	1 cut(s)	188
AfaI	GTAC	2 cut(s)	68, 685
AfiI	CCNNNNNNNGG	1 cut(s)	509
AjnI	CCWGG	2 cut(s)	141, 197
AluBI	AGCT	3 cut(s)	126, 264, 515
AluI	AGCT	3 cut(s)	126, 264, 515
Alw26I	GTCTC	1 cut(s)	636
AoxI	GGCC	1 cut(s)	241
ApeKI	GCWGC	1 cut(s)	499
AspS9I	GGNCC	1 cut(s)	242
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	2 cut(s)	97, 157
AsuII	TTCGAA	1 cut(s)	543
BanI	GGYRCC	1 cut(s)	295
BbvCI	CCTCAGC	1 cut(s)	127
BbvI	GCAGC	1 cut(s)	511
BccI	CCATC	2 cut(s)	151, 431
BciT130I	CCWGG	2 cut(s)	143, 199
BciVI	GTATCC	1 cut(s)	149
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	1 cut(s)	636
BfaI	CTAG	1 cut(s)	610
BfuAI	ACCTGC	1 cut(s)	373
BfuI	GTATCC	1 cut(s)	149
BisI	GCNGC	1 cut(s)	500
BlsI	GCNGC	1 cut(s)	501
Bme1390I	CCNGG	3 cut(s)	83, 143, 199
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	2 cut(s)	297, 650
BmrFI	CCNGG	3 cut(s)	83, 143, 199
BmsI	GCATC	1 cut(s)	370
BpmI	CTGGAG	1 cut(s)	354
Bpu10I	CCTNAGC	1 cut(s)	127
Bpu14I	TTCGAA	1 cut(s)	543
BpuMI	CCSGG	1 cut(s)	83
BsaBI	GATNNNNATC	1 cut(s)	422
BsaHI	GRCGYC	1 cut(s)	188
BsaJI	CCNNGG	3 cut(s)	197, 198, 313
Bsc4I	CCNNNNNNNGG	1 cut(s)	509
Bse1I	ACTGG	1 cut(s)	337
Bse8I	GATNNNNATC	1 cut(s)	422
BseBI	CCWGG	2 cut(s)	143, 199
BseDI	CCNNGG	3 cut(s)	197, 198, 313
BseGI	GGATG	2 cut(s)	79, 473
BseJI	GATNNNNATC	1 cut(s)	422
BseLI	CCNNNNNNNGG	1 cut(s)	509
BseMII	CTCAG	2 cut(s)	118, 631
BseNI	ACTGG	1 cut(s)	337
BseXI	GCAGC	1 cut(s)	511
BshFI	GGCC	1 cut(s)	243
BshNI	GGYRCC	1 cut(s)	295
BsiSI	CCGG	1 cut(s)	82
BslFI	GGGAC	2 cut(s)	164, 367
BslI	CCNNNNNNNGG	1 cut(s)	509
BsmAI	GTCTC	1 cut(s)	636
BsmFI	GGGAC	2 cut(s)	164, 367
BsmI	GAATGC	1 cut(s)	539
BsnI	GGCC	1 cut(s)	243
Bsp119I	TTCGAA	1 cut(s)	543
Bsp1407I	TGTACA	2 cut(s)	66, 683
Bsp19I	CCATGG	1 cut(s)	313
BspACI	CCGC	2 cut(s)	436, 617
BspANI	GGCC	1 cut(s)	243
BspCNI	CTCAG	2 cut(s)	119, 632
BspHI	TCATGA	1 cut(s)	458
BspLI	GGNNCC	2 cut(s)	297, 650
BspMI	ACCTGC	1 cut(s)	373
BspT104I	TTCGAA	1 cut(s)	543
BspT107I	GGYRCC	1 cut(s)	295
BsrGI	TGTACA	2 cut(s)	66, 683
BsrI	ACTGG	1 cut(s)	337
BssECI	CCNNGG	3 cut(s)	197, 198, 313
BssNI	GRCGYC	1 cut(s)	188
BssT1I	CCWWGG	1 cut(s)	313
Bst2UI	CCWGG	2 cut(s)	143, 199
BstACI	GRCGYC	1 cut(s)	188
BstAUI	TGTACA	2 cut(s)	66, 683
BstBI	TTCGAA	1 cut(s)	543
BstC8I	GCNNGC	4 cut(s)	600, 604, 615, 666
BstDEI	CTNAG	2 cut(s)	127, 640
BstDSI	CCRYGG	1 cut(s)	313
BstF5I	GGATG	2 cut(s)	79, 473
BstMAI	GTCTC	1 cut(s)	636
BstMWI	GCNNNNNNNGC	2 cut(s)	132, 309
BstNI	CCWGG	2 cut(s)	143, 199
BstNSI	RCATGY	1 cut(s)	606
BstSCI	CCNGG	3 cut(s)	81, 141, 197
BstV1I	GCAGC	1 cut(s)	511
BsuI	GTATCC	1 cut(s)	149
BsuRI	GGCC	1 cut(s)	243
BtgI	CCRYGG	1 cut(s)	313
BtsCI	GGATG	2 cut(s)	79, 473
BtsIMutI	CAGTG	1 cut(s)	414
BveI	ACCTGC	1 cut(s)	373
Cac8I	GCNNGC	4 cut(s)	600, 604, 615, 666
CciI	TCATGA	1 cut(s)	458
Cfr13I	GGNCC	1 cut(s)	242
Csp6I	GTAC	2 cut(s)	67, 684
CviAII	CATG	7 cut(s)	115, 268, 300, 314, 350, 459, 603
CviJI	RGCY	9 cut(s)	63, 126, 243, 264, 318, 502, 515, 639, 651
CviKI_1	RGCY	9 cut(s)	63, 126, 243, 264, 318, 502, 515, 639, 651
CviQI	GTAC	2 cut(s)	67, 684
DdeI	CTNAG	2 cut(s)	127, 640
EciI	GGCGGA	1 cut(s)	632
Eco130I	CCWWGG	1 cut(s)	313
EcoRII	CCWGG	2 cut(s)	141, 197
EcoT14I	CCWWGG	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	313
FaeI	CATG	7 cut(s)	118, 271, 303, 317, 353, 462, 606
FaqI	GGGAC	2 cut(s)	164, 367
FatI	CATG	7 cut(s)	114, 267, 299, 313, 349, 458, 602
FauNDI	CATATG	1 cut(s)	507
Fnu4HI	GCNGC	1 cut(s)	500
FokI	GGATG	2 cut(s)	86, 460
Fsp4HI	GCNGC	1 cut(s)	500
FspBI	CTAG	1 cut(s)	610
GluI	GCNGC	1 cut(s)	500
GsuI	CTGGAG	1 cut(s)	354
HaeIII	GGCC	1 cut(s)	243
HapII	CCGG	1 cut(s)	82
Hin1I	GRCGYC	1 cut(s)	188
Hin1II	CATG	7 cut(s)	118, 271, 303, 317, 353, 462, 606
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HindIII	AAGCTT	1 cut(s)	262
HinfI	GANTC	4 cut(s)	24, 88, 207, 280
HpaII	CCGG	1 cut(s)	82
HphI	GGTGA	2 cut(s)	97, 157
Hpy166II	GTNNAC	5 cut(s)	79, 121, 493, 684, 686
Hpy188III	TCNNGA	3 cut(s)	211, 459, 486
Hpy8I	GTNNAC	5 cut(s)	79, 121, 493, 684, 686
Hpy99I	CGWCG	1 cut(s)	193
HpyAV	CCTTC	1 cut(s)	103
HpyCH4IV	ACGT	2 cut(s)	57, 188
HpyCH4V	TGCA	4 cut(s)	229, 271, 323, 598
HpyF10VI	GCNNNNNNNGC	2 cut(s)	132, 309
HpyF3I	CTNAG	2 cut(s)	127, 640
HpySE526I	ACGT	2 cut(s)	57, 188
Hsp92I	GRCGYC	1 cut(s)	188
Hsp92II	CATG	7 cut(s)	118, 271, 303, 317, 353, 462, 606
LmnI	GCTCC	4 cut(s)	132, 379, 512, 648
Lsp1109I	GCAGC	1 cut(s)	511
LweI	GCATC	1 cut(s)	370
MaeI	CTAG	1 cut(s)	610
MaeII	ACGT	2 cut(s)	57, 188
MaeIII	GTNAC	2 cut(s)	85, 585
MboII	GAAGA	1 cut(s)	16
MfeI	CAATTG	1 cut(s)	233
MluCI	AATT	3 cut(s)	233, 272, 655
MlyI	GAGTC	1 cut(s)	82
MnlI	CCTC	3 cut(s)	122, 441, 662
MseI	TTAA	2 cut(s)	44, 658
MspA1I	CMGCKG	1 cut(s)	126
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	3 cut(s)	83, 143, 199
MunI	CAATTG	1 cut(s)	233
Mva1269I	GAATGC	1 cut(s)	539
MvaI	CCWGG	2 cut(s)	143, 199
MwoI	GCNNNNNNNGC	2 cut(s)	132, 309
NciI	CCSGG	1 cut(s)	83
NcoI	CCATGG	1 cut(s)	313
NdeI	CATATG	1 cut(s)	507
NlaIII	CATG	7 cut(s)	118, 271, 303, 317, 353, 462, 606
NlaIV	GGNNCC	2 cut(s)	297, 650
NmuCI	GTSAC	1 cut(s)	85
NspI	RCATGY	1 cut(s)	606
NspV	TTCGAA	1 cut(s)	543
PaeI	GCATGC	1 cut(s)	606
PagI	TCATGA	1 cut(s)	458
PaqCI	CACCTGC	1 cut(s)	373
PasI	CCCWGGG	1 cut(s)	198
PctI	GAATGC	1 cut(s)	539
PfeI	GAWTC	3 cut(s)	24, 207, 280
PkrI	GCNGC	1 cut(s)	501
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
Psp6I	CCWGG	2 cut(s)	141, 197
PspGI	CCWGG	2 cut(s)	141, 197
PspN4I	GGNNCC	2 cut(s)	297, 650
PspPI	GGNCC	1 cut(s)	242
PvuII	CAGCTG	1 cut(s)	126
RsaI	GTAC	2 cut(s)	68, 685
RsaNI	GTAC	2 cut(s)	67, 684
SaqAI	TTAA	2 cut(s)	44, 658
SatI	GCNGC	1 cut(s)	500
Sau96I	GGNCC	1 cut(s)	242
SchI	GAGTC	1 cut(s)	82
ScrFI	CCNGG	3 cut(s)	83, 143, 199
SetI	ASST	8 cut(s)	60, 128, 191, 266, 387, 433, 517, 696
SfaNI	GCATC	1 cut(s)	370
SfuI	TTCGAA	1 cut(s)	543
SphI	GCATGC	1 cut(s)	606
Sse9I	AATT	3 cut(s)	233, 272, 655
SsiI	CCGC	2 cut(s)	436, 617
SspI	AATATT	1 cut(s)	42
SspMI	CTAG	1 cut(s)	610
StyD4I	CCNGG	3 cut(s)	81, 141, 197
StyI	CCWWGG	1 cut(s)	313
TaiI	ACGT	2 cut(s)	60, 191
TaqI	TCGA	3 cut(s)	191, 543, 677
TasI	AATT	3 cut(s)	233, 272, 655
TatI	WGTACW	2 cut(s)	66, 683
TfiI	GAWTC	3 cut(s)	24, 207, 280
Tru1I	TTAA	2 cut(s)	44, 658
Tru9I	TTAA	2 cut(s)	44, 658
TscAI	CASTG	1 cut(s)	414
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	1 cut(s)	499
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	4 cut(s)	164, 182, 256, 462
TspRI	CASTG	1 cut(s)	414
XceI	RCATGY	1 cut(s)	606
XspI	CTAG	1 cut(s)	610
ZraI	GACGTC	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.