Rh1CG177900

Metacaspase-1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000588
Physical Location & Seq
Reverse (-)
39232885 .. 39234815
1931 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG177900.1

Sequence Viewer

Length: 741 bp
ATGATGATGAGCAATTATGGAGGCCAACAACTACTAGTGATCGACTGTTGCTATTGCCAGACCCAAATCCCGCTGGTGAGTCCGATATCCGTCCTCTGCCGCCGCTGCGGCCGCTGTACCCGCGTCGCCTCTCCGGGCTTTCCCCGCTCCCCCTATAGTGCTGTACCCTACTATGTCCGTATAAACCGACCACCACACGCCGGCTTCCCCCACAGATCACCAGGACCTCCGCCGAAAGTGCACAGGCGGAAGAAGGCGGTGATCTGCGGGATATCGTATCTATACACGAGGGGTGAGCTCAACGGTTGCATCAATGACGCCAAACGCATGCAGAGTCTCCTCATCAGCATGTTCAATTTTGCAGAAGATTCCATTATCATGCTCACTGAGAAAGAAACTGACCCATATAAGATTCCATATAAAAGCAATATTGAAGGGGCATTACGTTGGCTTGTACAAGGATGTCAACCGGGTGACTCCCTTCTGTTTTACTTCGCTGGTCATGGTTCACAGCTGAGGGAGCAGTATCGTGGTGATGAACTTGATGGAAAGGATGAAACCCTTTGTCCCCTTGACTTCGAAACCAAGGGTATGATTCGTGATGATTGGATAAATGCAACAATTGTTGGGCCCATTCCACGTGACGTCAAGCTTCATGCAATTGTAGATTCTTGTAGTAGTGGCACCATACTGGATTTGCCATGGCTTTGCAATATGGACTGGTTAGTGGGTGTAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C14 zf-LSD1

Protein Analysis

246

Amino Acids

27.66

Weight (kDa)

8.23

Isoelectric Point (pI)

47.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C14 PF00656 83 - 233 2.5e-23 Caspase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000588)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02170
fragaria_vesca FvH4_7g08970 FvH4_7g08970 FvH4_7g08970 FvH4_7g26490
malus_domestica MD01G1173500.v1.1 MD02G1221900.v1.1 MD05G1044000.v1.1 MD07G1094600.v1.1 MD07G1240400.v1.1 MD07G1240500.v1.1 MD10G1051100.v1.1 MD10G1051200.v1.1
prunus_persica Prupe.2G118900_v2.0.a1 Prupe.2G269200_v2.0.a1 Prupe.8G059400_v2.0.a1
pyrus_communis pycom01g18530 pycom01g18540 pycom02g18780 pycom05g03650 pycom07g07790 pycom07g21680 pycom10g03590
rosa_chinensis RchiOBHm_Chr1g0344331 RchiOBHm_Chr1g0344461 RchiOBHm_Chr1g0344571 RchiOBHm_Chr1g0344661 RchiOBHm_Chr1g0344751 RchiOBHm_Chr1g0344811 RchiOBHm_Chr1g0344881 RchiOBHm_Chr1g0344901 RchiOBHm_Chr1g0344911 RchiOBHm_Chr1g0373091
rosa_laevigata RLG00000028867 RLG00000028877 RLG00000028880 RLG00000028885 RLG00000028898
rosa_multiflora Rmu_co8105290.1_g000001 Rmu_co8220756.1_g000001 Rmu_co8317965.1_g000001 Rmu_co8413861.1_g000001 Rmu_co8518347.1_g000001 Rmu_sc0000390.1_g000001 Rmu_sc0005177.1_g000002 Rmu_sc0007317.1_g000002 Rmu_sc0010876.1_g000003 Rmu_sc0013714.1_g000001 Rmu_sc0029558.1_g000002 Rmu_ssc0000167.1_g000004
rosa_roxburghii Rroxscaffold_4G00284470 Rroxscaffold_4G00309530 Rroxscaffold_4G00309580 Rroxscaffold_4G00309590 Rroxscaffold_4G00309620 Rroxscaffold_4G00309630 Rroxscaffold_4G00309720 Rroxscaffold_4G00309880
rosa_rugosa Rorug01G0173200 Rorug01G0173200 Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug01G0174900 Rorug01G0376100
rosa_samantha Rh1CG175000 Rh1CG176200 Rh1CG177200 Rh1CG177800 Rh1CG177900 Rh1CG178000 Rh1CG361900 Rh1DG188500 Rh1DG188700 Rh1DG189400 Rh1DG379400
rosa_wichuraiana Rw1G015680 Rw1G015800 Rw1G015810 Rw1G015870 Rw1G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 648
AccB1I GGYRCC 1 cut(s) 683
AccBSI CCGCTC 1 cut(s) 147
AccII CGCG 1 cut(s) 123
AcoI YGGCCR 1 cut(s) 109
AcvI CACGTG 1 cut(s) 641
AcyI GRCGYC 2 cut(s) 318, 645
AfaI GTAC 3 cut(s) 118, 165, 456
AfiI CCNNNNNNNGG 1 cut(s) 200
AgsI TTSAA 2 cut(s) 355, 434
AhlI ACTAGT 1 cut(s) 34
AjnI CCWGG 1 cut(s) 220
AluBI AGCT 3 cut(s) 298, 514, 652
AluI AGCT 3 cut(s) 298, 514, 652
Alw21I GWGCWC 2 cut(s) 243, 300
Alw26I GTCTC 1 cut(s) 341
Alw44I GTGCAC 1 cut(s) 239
AoxI GGCC 3 cut(s) 22, 109, 629
ApaI GGGCCC 1 cut(s) 633
ApaLI GTGCAC 1 cut(s) 239
ApeKI GCWGC 1 cut(s) 105
AspS9I GGNCC 3 cut(s) 224, 629, 630
AsuC2I CCSGG 2 cut(s) 135, 471
AsuHPI GGTGA 6 cut(s) 88, 210, 271, 305, 485, 545
AsuII TTCGAA 1 cut(s) 579
AvaII GGWCC 1 cut(s) 224
BaeGI GKGCMC 2 cut(s) 243, 633
BanI GGYRCC 1 cut(s) 683
BanII GRGCYC 2 cut(s) 300, 633
BarI GAAGNNNNNNTAC 2 cut(s) 426, 458
BauI CACGAG 1 cut(s) 286
BbrPI CACGTG 1 cut(s) 641
Bbv12I GWGCWC 2 cut(s) 243, 300
BbvCI CCTCAGC 1 cut(s) 515
BbvI GCAGC 1 cut(s) 92
BccI CCATC 1 cut(s) 539
BciT130I CCWGG 1 cut(s) 222
BcnI CCSGG 2 cut(s) 135, 471
BcoDI GTCTC 1 cut(s) 341
BcuI ACTAGT 1 cut(s) 34
BfaI CTAG 1 cut(s) 35
BfmI CTRYAG 1 cut(s) 154
BglI GCCNNNNNGGC 1 cut(s) 108
BisI GCNGC 5 cut(s) 100, 103, 106, 109, 112
BlsI GCNGC 5 cut(s) 101, 104, 107, 110, 113
Bme1390I CCNGG 3 cut(s) 135, 222, 471
Bme18I GGWCC 1 cut(s) 224
BmgT120I GGNCC 3 cut(s) 224, 629, 630
BmiI GGNNCC 2 cut(s) 631, 685
BmrFI CCNGG 3 cut(s) 135, 222, 471
BmsI GCATC 1 cut(s) 318
Bpu10I CCTNAGC 1 cut(s) 515
Bpu14I TTCGAA 1 cut(s) 579
BpuMI CCSGG 2 cut(s) 135, 471
BsaAI YACGTR 1 cut(s) 641
BsaHI GRCGYC 2 cut(s) 318, 645
BsaJI CCNNGG 2 cut(s) 585, 701
Bsc4I CCNNNNNNNGG 1 cut(s) 200
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 2 cut(s) 696, 725
BseBI CCWGG 1 cut(s) 222
BseDI CCNNGG 2 cut(s) 585, 701
BseGI GGATG 2 cut(s) 467, 559
BseLI CCNNNNNNNGG 1 cut(s) 200
BseMII CTCAG 2 cut(s) 378, 506
BseNI ACTGG 2 cut(s) 696, 725
BseRI GAGGAG 1 cut(s) 329
BseSI GKGCMC 2 cut(s) 243, 633
BseX3I CGGCCG 1 cut(s) 109
BseXI GCAGC 1 cut(s) 92
Bsh1236I CGCG 1 cut(s) 123
Bsh1285I CGRYCG 1 cut(s) 112
BshFI GGCC 3 cut(s) 24, 111, 631
BshNI GGYRCC 1 cut(s) 683
BsiEI CGRYCG 1 cut(s) 112
BsiHKAI GWGCWC 2 cut(s) 243, 300
BsiSI CCGG 3 cut(s) 134, 201, 470
BslFI GGGAC 1 cut(s) 552
BslI CCNNNNNNNGG 1 cut(s) 200
BsmAI GTCTC 1 cut(s) 341
BsmFI GGGAC 1 cut(s) 552
BsnI GGCC 3 cut(s) 24, 111, 631
Bsp119I TTCGAA 1 cut(s) 579
Bsp120I GGGCCC 1 cut(s) 629
Bsp1286I GDGCHC 3 cut(s) 243, 300, 633
Bsp1407I TGTACA 1 cut(s) 454
Bsp143I GATC 3 cut(s) 39, 215, 261
Bsp19I CCATGG 1 cut(s) 701
BspANI GGCC 3 cut(s) 24, 111, 631
BspCNI CTCAG 2 cut(s) 379, 507
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 2 cut(s) 631, 685
BspT104I TTCGAA 1 cut(s) 579
BspT107I GGYRCC 1 cut(s) 683
BsrBI CCGCTC 1 cut(s) 147
BsrFI RCCGGY 1 cut(s) 200
BsrGI TGTACA 1 cut(s) 454
BsrI ACTGG 2 cut(s) 696, 725
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 2 cut(s) 585, 701
BssMI GATC 3 cut(s) 39, 215, 261
BssNI GRCGYC 2 cut(s) 318, 645
BssSI CACGAG 1 cut(s) 286
BssT1I CCWWGG 2 cut(s) 585, 701
Bst2BI CACGAG 1 cut(s) 286
Bst2UI CCWGG 1 cut(s) 222
Bst4CI ACNGT 2 cut(s) 47, 305
BstACI GRCGYC 2 cut(s) 318, 645
BstAUI TGTACA 1 cut(s) 454
BstBAI YACGTR 1 cut(s) 641
BstBI TTCGAA 1 cut(s) 579
BstC8I GCNNGC 2 cut(s) 202, 329
BstDEI CTNAG 2 cut(s) 387, 515
BstDSI CCRYGG 1 cut(s) 701
BstF5I GGATG 2 cut(s) 467, 559
BstFNI CGCG 1 cut(s) 123
BstKTI GATC 3 cut(s) 42, 218, 264
BstMAI GTCTC 1 cut(s) 341
BstMBI GATC 3 cut(s) 39, 215, 261
BstMCI CGRYCG 1 cut(s) 112
BstMWI GCNNNNNNNGC 7 cut(s) 105, 108, 111, 120, 144, 238, 520
BstNI CCWGG 1 cut(s) 222
BstNSI RCATGY 2 cut(s) 331, 352
BstSCI CCNGG 3 cut(s) 133, 220, 469
BstSFI CTRYAG 1 cut(s) 154
BstSLI GKGCMC 2 cut(s) 243, 633
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 92
BstZI CGGCCG 1 cut(s) 109
BsuRI GGCC 3 cut(s) 24, 111, 631
BtgI CCRYGG 1 cut(s) 701
BtsCI GGATG 2 cut(s) 467, 559
BtsIMutI CAGTG 1 cut(s) 384
Cac8I GCNNGC 2 cut(s) 202, 329
CciNI GCGGCCGC 1 cut(s) 109
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 3 cut(s) 224, 629, 630
CseI GACGC 2 cut(s) 112, 326
Csp6I GTAC 3 cut(s) 117, 164, 455
CviAII CATG 6 cut(s) 328, 349, 379, 503, 656, 702
CviQI GTAC 3 cut(s) 117, 164, 455
DdeI CTNAG 2 cut(s) 387, 515
DpnI GATC 3 cut(s) 41, 217, 263
DpnII GATC 3 cut(s) 39, 215, 261
EaeI YGGCCR 1 cut(s) 109
EagI CGGCCG 1 cut(s) 109
EciI GGCGGA 2 cut(s) 219, 262
Ecl136II GAGCTC 1 cut(s) 298
EclXI CGGCCG 1 cut(s) 109
Eco130I CCWWGG 2 cut(s) 585, 701
Eco24I GRGCYC 2 cut(s) 300, 633
Eco32I GATATC 2 cut(s) 87, 273
Eco47I GGWCC 1 cut(s) 224
Eco52I CGGCCG 1 cut(s) 109
Eco53kI GAGCTC 1 cut(s) 298
Eco72I CACGTG 1 cut(s) 641
EcoICRI GAGCTC 1 cut(s) 298
EcoO109I RGGNCCY 1 cut(s) 224
EcoRII CCWGG 1 cut(s) 220
EcoRV GATATC 2 cut(s) 87, 273
EcoT14I CCWWGG 2 cut(s) 585, 701
EcoT38I GRGCYC 2 cut(s) 300, 633
ErhI CCWWGG 2 cut(s) 585, 701
FaeI CATG 6 cut(s) 331, 352, 382, 506, 659, 705
FaqI GGGAC 1 cut(s) 552
FatI CATG 6 cut(s) 327, 348, 378, 502, 655, 701
FauI CCCGC 4 cut(s) 78, 128, 152, 260
Fnu4HI GCNGC 5 cut(s) 100, 103, 106, 109, 112
FokI GGATG 2 cut(s) 474, 566
FriOI GRGCYC 2 cut(s) 300, 633
Fsp4HI GCNGC 5 cut(s) 100, 103, 106, 109, 112
FspBI CTAG 1 cut(s) 35
GluI GCNGC 5 cut(s) 100, 103, 106, 109, 112
HaeIII GGCC 3 cut(s) 24, 111, 631
HapII CCGG 3 cut(s) 134, 201, 470
HgaI GACGC 2 cut(s) 112, 326
Hin1I GRCGYC 2 cut(s) 318, 645
Hin1II CATG 6 cut(s) 331, 352, 382, 506, 659, 705
HincII GTYRAC 1 cut(s) 467
HindII GTYRAC 1 cut(s) 467
HindIII AAGCTT 1 cut(s) 650
HinfI GANTC 7 cut(s) 79, 334, 368, 412, 476, 595, 668
HpaII CCGG 3 cut(s) 134, 201, 470
HphI GGTGA 6 cut(s) 88, 210, 271, 305, 485, 545
Hpy166II GTNNAC 3 cut(s) 241, 467, 509
Hpy188I TCNGA 1 cut(s) 84
Hpy188III TCNNGA 1 cut(s) 599
Hpy8I GTNNAC 3 cut(s) 241, 467, 509
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 3 cut(s) 247, 428, 491
HpyCH4III ACNGT 2 cut(s) 47, 305
HpyCH4IV ACGT 3 cut(s) 445, 640, 645
HpyCH4V TGCA 7 cut(s) 241, 309, 331, 362, 617, 659, 711
HpyF10VI GCNNNNNNNGC 7 cut(s) 105, 108, 111, 120, 144, 238, 520
HpyF3I CTNAG 2 cut(s) 387, 515
HpySE526I ACGT 3 cut(s) 445, 640, 645
Hsp92I GRCGYC 2 cut(s) 318, 645
Hsp92II CATG 6 cut(s) 331, 352, 382, 506, 659, 705
KroI GCCGGC 1 cut(s) 200
KroNI GCCGGC 1 cut(s) 202
Kzo9I GATC 3 cut(s) 39, 215, 261
LmnI GCTCC 2 cut(s) 152, 520
Lsp1109I GCAGC 1 cut(s) 92
LweI GCATC 1 cut(s) 318
MaeI CTAG 1 cut(s) 35
MaeII ACGT 3 cut(s) 445, 640, 645
MaeIII GTNAC 2 cut(s) 473, 641
MalI GATC 3 cut(s) 41, 217, 263
MbiI CCGCTC 1 cut(s) 147
MboI GATC 3 cut(s) 39, 215, 261
MboII GAAGA 2 cut(s) 262, 377
MfeI CAATTG 2 cut(s) 621, 660
MhlI GDGCHC 3 cut(s) 243, 300, 633
MluCI AATT 4 cut(s) 13, 355, 621, 660
MlyI GAGTC 3 cut(s) 88, 343, 470
MnlI CCTC 7 cut(s) 14, 104, 139, 237, 282, 350, 510
MroNI GCCGGC 1 cut(s) 200
MslI CAYNNNNRTG 2 cut(s) 347, 377
MspA1I CMGCKG 4 cut(s) 73, 105, 114, 514
MspI CCGG 3 cut(s) 134, 201, 470
MspR9I CCNGG 3 cut(s) 135, 222, 471
MunI CAATTG 2 cut(s) 621, 660
MvaI CCWGG 1 cut(s) 222
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 7 cut(s) 105, 108, 111, 120, 144, 238, 520
NaeI GCCGGC 1 cut(s) 202
NciI CCSGG 2 cut(s) 135, 471
NcoI CCATGG 1 cut(s) 701
NdeII GATC 3 cut(s) 39, 215, 261
NgoMIV GCCGGC 1 cut(s) 200
NlaIII CATG 6 cut(s) 331, 352, 382, 506, 659, 705
NlaIV GGNNCC 2 cut(s) 631, 685
NmuCI GTSAC 2 cut(s) 473, 641
NotI GCGGCCGC 1 cut(s) 109
NspI RCATGY 2 cut(s) 331, 352
NspV TTCGAA 1 cut(s) 579
PaeI GCATGC 1 cut(s) 331
PdiI GCCGGC 1 cut(s) 202
PfeI GAWTC 4 cut(s) 368, 412, 595, 668
PkrI GCNGC 5 cut(s) 101, 104, 107, 110, 113
PleI GAGTC 3 cut(s) 87, 342, 470
PmaCI CACGTG 1 cut(s) 641
PmlI CACGTG 1 cut(s) 641
PpsI GAGTC 3 cut(s) 87, 342, 470
Ppu21I YACGTR 1 cut(s) 641
PpuMI RGGWCCY 1 cut(s) 224
Psp124BI GAGCTC 1 cut(s) 300
Psp5II RGGWCCY 1 cut(s) 224
Psp6I CCWGG 1 cut(s) 220
PspCI CACGTG 1 cut(s) 641
PspGI CCWGG 1 cut(s) 220
PspN4I GGNNCC 2 cut(s) 631, 685
PspOMI GGGCCC 1 cut(s) 629
PspPI GGNCC 3 cut(s) 224, 629, 630
PspPPI RGGWCCY 1 cut(s) 224
PvuII CAGCTG 1 cut(s) 514
RsaI GTAC 3 cut(s) 118, 165, 456
RsaNI GTAC 3 cut(s) 117, 164, 455
RseI CAYNNNNRTG 2 cut(s) 347, 377
SacI GAGCTC 1 cut(s) 300
SatI GCNGC 5 cut(s) 100, 103, 106, 109, 112
Sau3AI GATC 3 cut(s) 39, 215, 261
Sau96I GGNCC 3 cut(s) 224, 629, 630
SchI GAGTC 3 cut(s) 88, 343, 470
ScrFI CCNGG 3 cut(s) 135, 222, 471
SduI GDGCHC 3 cut(s) 243, 300, 633
SetI ASST 7 cut(s) 229, 300, 448, 516, 643, 648, 654
SfaNI GCATC 1 cut(s) 318
SfcI CTRYAG 1 cut(s) 154
SfuI TTCGAA 1 cut(s) 579
SinI GGWCC 1 cut(s) 224
SmiMI CAYNNNNRTG 2 cut(s) 347, 377
SpeI ACTAGT 1 cut(s) 34
SphI GCATGC 1 cut(s) 331
Sse9I AATT 4 cut(s) 13, 355, 621, 660
SspI AATATT 1 cut(s) 430
SspMI CTAG 1 cut(s) 35
SstI GAGCTC 1 cut(s) 300
StyD4I CCNGG 3 cut(s) 133, 220, 469
StyI CCWWGG 2 cut(s) 585, 701
TaaI ACNGT 2 cut(s) 47, 305
TaiI ACGT 3 cut(s) 448, 643, 648
TaqI TCGA 2 cut(s) 42, 579
TasI AATT 4 cut(s) 13, 355, 621, 660
TatI WGTACW 1 cut(s) 454
TauI GCSGC 4 cut(s) 102, 105, 111, 114
TfiI GAWTC 4 cut(s) 368, 412, 595, 668
TscAI CASTG 1 cut(s) 391
TseFI GTSAC 2 cut(s) 473, 641
TseI GCWGC 1 cut(s) 105
Tsp45I GTSAC 2 cut(s) 473, 641
TspDTI ATGAA 3 cut(s) 552, 570, 644
TspGWI ACGGA 2 cut(s) 79, 167
TspRI CASTG 1 cut(s) 391
VneI GTGCAC 1 cut(s) 239
VpaK11BI GGWCC 1 cut(s) 224
XceI RCATGY 2 cut(s) 331, 352
XspI CTAG 1 cut(s) 35
ZraI GACGTC 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.