MD07G1240500.v1.1

Metacaspase-1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000588
Physical Location & Seq
Forward (+)
31201625 .. 31201987
363 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1240500.v1.1.491

Sequence Viewer

Length: 177 bp
ATGTTCTTTTGTCTGCACAGAATCTCAAAGACTACTCCAACTGGTGTCATGACATTTTCTTTCATCCAAGCCATTGAGTACGGACATGGAACCACGAACGGGGACATACTGAGTTCGATGAGATCTACCACAACACGGAGAATGAAGAAGGTGATACTTCGACATCTGGCAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C14 zf-LSD1

Protein Analysis

59

Amino Acids

6.55

Weight (kDa)

10.95

Isoelectric Point (pI)

42.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000588)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02170
fragaria_vesca FvH4_7g08970 FvH4_7g08970 FvH4_7g08970 FvH4_7g26490
malus_domestica MD01G1173500.v1.1 MD02G1221900.v1.1 MD05G1044000.v1.1 MD07G1094600.v1.1 MD07G1240400.v1.1 MD07G1240500.v1.1 MD10G1051100.v1.1 MD10G1051200.v1.1
prunus_persica Prupe.2G118900_v2.0.a1 Prupe.2G269200_v2.0.a1 Prupe.8G059400_v2.0.a1
pyrus_communis pycom01g18530 pycom01g18540 pycom02g18780 pycom05g03650 pycom07g07790 pycom07g21680 pycom10g03590
rosa_chinensis RchiOBHm_Chr1g0344331 RchiOBHm_Chr1g0344461 RchiOBHm_Chr1g0344571 RchiOBHm_Chr1g0344661 RchiOBHm_Chr1g0344751 RchiOBHm_Chr1g0344811 RchiOBHm_Chr1g0344881 RchiOBHm_Chr1g0344901 RchiOBHm_Chr1g0344911 RchiOBHm_Chr1g0373091
rosa_laevigata RLG00000028867 RLG00000028877 RLG00000028880 RLG00000028885 RLG00000028898
rosa_multiflora Rmu_co8105290.1_g000001 Rmu_co8220756.1_g000001 Rmu_co8317965.1_g000001 Rmu_co8413861.1_g000001 Rmu_co8518347.1_g000001 Rmu_sc0000390.1_g000001 Rmu_sc0005177.1_g000002 Rmu_sc0007317.1_g000002 Rmu_sc0010876.1_g000003 Rmu_sc0013714.1_g000001 Rmu_sc0029558.1_g000002 Rmu_ssc0000167.1_g000004
rosa_roxburghii Rroxscaffold_4G00284470 Rroxscaffold_4G00309530 Rroxscaffold_4G00309580 Rroxscaffold_4G00309590 Rroxscaffold_4G00309620 Rroxscaffold_4G00309630 Rroxscaffold_4G00309720 Rroxscaffold_4G00309880
rosa_rugosa Rorug01G0173200 Rorug01G0173200 Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug01G0174900 Rorug01G0376100
rosa_samantha Rh1CG175000 Rh1CG176200 Rh1CG177200 Rh1CG177800 Rh1CG177900 Rh1CG178000 Rh1CG361900 Rh1DG188500 Rh1DG188700 Rh1DG189400 Rh1DG379400
rosa_wichuraiana Rw1G015680 Rw1G015800 Rw1G015810 Rw1G015870 Rw1G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 161
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 2 cut(s) 99, 135
AsuHPI GGTGA 1 cut(s) 163
BfuAI ACCTGC 1 cut(s) 161
BglII AGATCT 1 cut(s) 122
BmiI GGNNCC 1 cut(s) 91
Bsc4I CCNNNNNNNGG 2 cut(s) 99, 135
Bse1I ACTGG 1 cut(s) 46
BseGI GGATG 1 cut(s) 63
BseLI CCNNNNNNNGG 2 cut(s) 99, 135
BseMII CTCAG 1 cut(s) 101
BseNI ACTGG 1 cut(s) 46
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 2 cut(s) 99, 135
BsmFI GGGAC 1 cut(s) 116
Bsp143I GATC 1 cut(s) 122
BspCNI CTCAG 1 cut(s) 102
BspHI TCATGA 1 cut(s) 48
BspLI GGNNCC 1 cut(s) 91
BspMI ACCTGC 1 cut(s) 161
BsrI ACTGG 1 cut(s) 46
BssMI GATC 1 cut(s) 122
BstDEI CTNAG 1 cut(s) 110
BstF5I GGATG 1 cut(s) 63
BstKTI GATC 1 cut(s) 125
BstMBI GATC 1 cut(s) 122
BstX2I RGATCY 1 cut(s) 122
BstYI RGATCY 1 cut(s) 122
BtsCI GGATG 1 cut(s) 63
BveI ACCTGC 1 cut(s) 161
CciI TCATGA 1 cut(s) 48
Csp6I GTAC 1 cut(s) 79
CviAII CATG 2 cut(s) 49, 86
CviJI RGCY 1 cut(s) 71
CviKI_1 RGCY 1 cut(s) 71
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 1 cut(s) 110
DpnI GATC 1 cut(s) 124
DpnII GATC 1 cut(s) 122
FaeI CATG 2 cut(s) 52, 89
FaiI YATR 3 cut(s) 50, 87, 107
FaqI GGGAC 1 cut(s) 116
FatI CATG 2 cut(s) 48, 85
FokI GGATG 1 cut(s) 50
Hin1II CATG 2 cut(s) 52, 89
HinfI GANTC 1 cut(s) 21
HphI GGTGA 1 cut(s) 163
Hpy188III TCNNGA 1 cut(s) 49
HpyAV CCTTC 1 cut(s) 142
HpyCH4V TGCA 1 cut(s) 16
HpyF3I CTNAG 1 cut(s) 110
Hsp92II CATG 2 cut(s) 52, 89
Kzo9I GATC 1 cut(s) 122
LpnPI CCDG 3 cut(s) 27, 152, 156
MalI GATC 1 cut(s) 124
MboI GATC 1 cut(s) 122
MboII GAAGA 1 cut(s) 157
MflI RGATCY 1 cut(s) 122
MmeI TCCRAC 1 cut(s) 62
NdeII GATC 1 cut(s) 122
NlaIII CATG 2 cut(s) 52, 89
NlaIV GGNNCC 1 cut(s) 91
PagI TCATGA 1 cut(s) 48
PfeI GAWTC 1 cut(s) 21
PspN4I GGNNCC 1 cut(s) 91
PsuI RGATCY 1 cut(s) 122
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
Sau3AI GATC 1 cut(s) 122
SetI ASST 2 cut(s) 153, 175
SgeI CNNG 7 cut(s) 54, 61, 80, 98, 106, 112, 147
TaqI TCGA 2 cut(s) 116, 160
TfiI GAWTC 1 cut(s) 21
TspDTI ATGAA 2 cut(s) 52, 158
TspGWI ACGGA 2 cut(s) 96, 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.