Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000945

Physical Location & Seq

Genomic Coordinates Forward (+)

32786957 .. 32793142

Gene Structure 6186 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31681

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGAATGGGATGCAGATTCCTGCTCGAGCTAGCTCAGTTCCCCCAACTTTGGATGAGCAGAAACACGATCAGGCACGGCTTGAGTCCTTTAGACCTGCACCGTCATTGCCAAGCACTGCAGTTCCTATGCAGCTACCAAGGAAAGATCAACCTTCTGTCGACCAATCTAGTGCTGCTAAGGCTCATCTGCAACCCAAGGCCAAAAAGGATGTGCAAGTCTCACCTACAACGACTGCTAGCCAAAGTCAGAAACCTTCTGGTCCTCCAATGCATGGGATCCTTATGACGTCAATGCCATTTCATCAGCCACAGGTTTCTGTGCAATTTGGTGGCCTCAACCAGCAGATTCTTTTTTTTTGGTCTGAAATTCATCTATTGATAGCCTCAAAAAGCATACAACCAAAAACACAGAACAACAAAAGTTCCAATGTCTATGACAAAGAAGCCAAGACACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 ko05416 map03013 map05416

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

152

Amino Acids

16.68

Weight (kDa)

9.79

Isoelectric Point (pI)

61.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60240 AT3G60240 AT3G60240
fragaria_vesca	FvH4_7g08960 FvH4_7g08960 FvH4_7g08960 FvH4_7g08960
malus_domestica	MD02G1222000.v1.1 MD07G1093700.v1.1 MD07G1093900.v1.1 MD07G1094000.v1.1 MD07G1094100.v1.1 MD07G1094200.v1.1 MD07G1094300.v1.1 MD07G1094400.v1.1
prunus_persica	Prupe.2G118700_v2.0.a1
pyrus_communis	pycom02g18790 pycom07g07670 pycom07g07680 pycom07g07690 pycom07g07730 pycom07g07740 pycom07g07750 pycom07g07760 pycom07g07770 pycom07g07780 pycom12419g00310 pycom15g30700
rosa_chinensis	RchiOBHm_Chr1g0344441 RchiOBHm_Chr1g0344451 RchiOBHm_Chr5g0038171
rosa_laevigata	RLG00000028873 RLG00000028874 RLG00000028899 RLG00000033837
rosa_multiflora	Rmu_sc0002670.1_g000001 Rmu_sc0010876.1_g000002 Rmu_sc0015248.1_g000009 Rmu_sc0015248.1_g000010
rosa_roxburghii	Rroxscaffold_1G00042800 Rroxscaffold_1G00042810 Rroxscaffold_4G00309730
rosa_rugosa	Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug05G0171200 Rorug05G0171300 Rorug05G0171300
rosa_samantha	Rh1AG190800 Rh1BG157200 Rh1BG157300 Rh1CG176100 Rh1DG188400 Rh1DG188600 Rh5AG258600 Rh5BG262200 Rh5CG294400 Rh5CG294500 Rh5CG294600 Rh5CG294700 Rh5DG271300 Rh6AG374400
rosa_wichuraiana	Rw1G015670 Rw5G024210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	290
Acc36I	ACCTGC	1 cut(s)	103
AccB7I	CCANNNNNTGG	1 cut(s)	272
AccI	GTMKAC	1 cut(s)	159
AclWI	GGATC	2 cut(s)	271, 284
AcsI	RAATTY	1 cut(s)	366
AcyI	GRCGYC	1 cut(s)	287
AfiI	CCNNNNNNNGG	2 cut(s)	49, 272
AluBI	AGCT	3 cut(s)	29, 33, 133
AluI	AGCT	3 cut(s)	29, 33, 133
Alw26I	GTCTC	1 cut(s)	223
AlwI	GGATC	2 cut(s)	271, 284
Ama87I	CYCGRG	1 cut(s)	24
AoxI	GGCC	2 cut(s)	198, 331
ApeKI	GCWGC	2 cut(s)	130, 173
ApoI	RAATTY	1 cut(s)	366
AspS9I	GGNCC	1 cut(s)	260
AsuHPI	GGTGA	1 cut(s)	213
AsuNHI	GCTAGC	2 cut(s)	29, 236
AvaI	CYCGRG	1 cut(s)	24
AvaII	GGWCC	1 cut(s)	260
BamHI	GGATCC	1 cut(s)	276
BbvI	GCAGC	2 cut(s)	142, 160
BceAI	ACGGC	1 cut(s)	92
BcoDI	GTCTC	1 cut(s)	223
BfaI	CTAG	3 cut(s)	30, 168, 237
BfmI	CTRYAG	1 cut(s)	117
BfuAI	ACCTGC	1 cut(s)	103
BisI	GCNGC	2 cut(s)	131, 174
BlsI	GCNGC	2 cut(s)	132, 175
Bme18I	GGWCC	1 cut(s)	260
BmeT110I	CYCGRG	1 cut(s)	24
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	1 cut(s)	278
BmtI	GCTAGC	2 cut(s)	33, 240
Bpu10I	CCTNAGC	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	101
BsaHI	GRCGYC	1 cut(s)	287
BsaJI	CCNNGG	2 cut(s)	137, 195
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 272
Bse3DI	GCAATG	1 cut(s)	104
BseDI	CCNNGG	2 cut(s)	137, 195
BseGI	GGATG	3 cut(s)	15, 58, 214
BseLI	CCNNNNNNNGG	2 cut(s)	49, 272
BseMI	GCAATG	1 cut(s)	104
BseMII	CTCAG	1 cut(s)	48
BseXI	GCAGC	2 cut(s)	142, 160
BsgI	GTGCAG	1 cut(s)	81
BshFI	GGCC	2 cut(s)	200, 333
BsiHKCI	CYCGRG	1 cut(s)	24
BslI	CCNNNNNNNGG	2 cut(s)	49, 272
BsmAI	GTCTC	1 cut(s)	223
BsnI	GGCC	2 cut(s)	200, 333
BsoBI	CYCGRG	1 cut(s)	24
Bsp143I	GATC	3 cut(s)	67, 145, 276
BspANI	GGCC	2 cut(s)	200, 333
BspCNI	CTCAG	1 cut(s)	47
BspLI	GGNNCC	1 cut(s)	278
BspMAI	CTGCAG	1 cut(s)	121
BspMI	ACCTGC	1 cut(s)	103
BspOI	GCTAGC	2 cut(s)	33, 240
BspPI	GGATC	2 cut(s)	271, 284
BsrDI	GCAATG	1 cut(s)	104
BssECI	CCNNGG	2 cut(s)	137, 195
BssMI	GATC	3 cut(s)	67, 145, 276
BssNI	GRCGYC	1 cut(s)	287
BssT1I	CCWWGG	2 cut(s)	137, 195
Bst4CI	ACNGT	1 cut(s)	102
BstACI	GRCGYC	1 cut(s)	287
BstC8I	GCNNGC	2 cut(s)	31, 238
BstDEI	CTNAG	2 cut(s)	34, 177
BstF5I	GGATG	3 cut(s)	15, 58, 214
BstKTI	GATC	3 cut(s)	70, 148, 279
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	3 cut(s)	67, 145, 276
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstSFI	CTRYAG	1 cut(s)	117
BstV1I	GCAGC	2 cut(s)	142, 160
BstX2I	RGATCY	1 cut(s)	276
BstYI	RGATCY	1 cut(s)	276
BsuRI	GGCC	2 cut(s)	200, 333
BtsCI	GGATG	3 cut(s)	15, 58, 214
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	1 cut(s)	114
BveI	ACCTGC	1 cut(s)	103
Cac8I	GCNNGC	2 cut(s)	31, 238
Cfr13I	GGNCC	1 cut(s)	260
CviAII	CATG	1 cut(s)	272
DdeI	CTNAG	2 cut(s)	34, 177
DpnI	GATC	3 cut(s)	69, 147, 278
DpnII	GATC	3 cut(s)	67, 145, 276
Eco130I	CCWWGG	2 cut(s)	137, 195
Eco47I	GGWCC	1 cut(s)	260
Eco88I	CYCGRG	1 cut(s)	24
EcoT14I	CCWWGG	2 cut(s)	137, 195
EcoT22I	ATGCAT	1 cut(s)	273
ErhI	CCWWGG	2 cut(s)	137, 195
FaeI	CATG	1 cut(s)	275
FaiI	YATR	5 cut(s)	128, 273, 284, 395, 435
FatI	CATG	1 cut(s)	271
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	2 cut(s)	131, 174
FokI	GGATG	3 cut(s)	22, 65, 221
Fsp4HI	GCNGC	2 cut(s)	131, 174
FspBI	CTAG	3 cut(s)	30, 168, 237
GluI	GCNGC	2 cut(s)	131, 174
HaeIII	GGCC	2 cut(s)	200, 333
Hin1I	GRCGYC	1 cut(s)	287
Hin1II	CATG	1 cut(s)	275
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	3 cut(s)	16, 83, 346
HphI	GGTGA	1 cut(s)	213
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	2 cut(s)	249, 364
Hpy8I	GTNNAC	1 cut(s)	160
HpyAV	CCTTC	2 cut(s)	162, 264
HpyCH4III	ACNGT	1 cut(s)	102
HpyCH4IV	ACGT	1 cut(s)	287
HpyCH4V	TGCA	8 cut(s)	13, 98, 119, 130, 190, 214, 271, 322
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	2 cut(s)	34, 177
HpySE526I	ACGT	1 cut(s)	287
Hsp92I	GRCGYC	1 cut(s)	287
Hsp92II	CATG	1 cut(s)	275
Kzo9I	GATC	3 cut(s)	67, 145, 276
LpnPI	CCDG	6 cut(s)	33, 56, 108, 243, 296, 353
Lsp1109I	GCAGC	2 cut(s)	142, 160
MaeI	CTAG	3 cut(s)	30, 168, 237
MaeII	ACGT	1 cut(s)	287
MalI	GATC	3 cut(s)	69, 147, 278
MboI	GATC	3 cut(s)	67, 145, 276
MflI	RGATCY	1 cut(s)	276
MluCI	AATT	2 cut(s)	323, 366
MlyI	GAGTC	1 cut(s)	92
MnlI	CCTC	3 cut(s)	273, 344, 394
Mph1103I	ATGCAT	1 cut(s)	273
MwoI	GCNNNNNNNGC	1 cut(s)	179
NdeII	GATC	3 cut(s)	67, 145, 276
NheI	GCTAGC	2 cut(s)	29, 236
NlaIII	CATG	1 cut(s)	275
NlaIV	GGNNCC	1 cut(s)	278
NsiI	ATGCAT	1 cut(s)	273
PaeR7I	CTCGAG	1 cut(s)	24
PfeI	GAWTC	2 cut(s)	16, 346
PflMI	CCANNNNNTGG	1 cut(s)	272
PkrI	GCNGC	2 cut(s)	132, 175
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PspN4I	GGNNCC	1 cut(s)	278
PspPI	GGNCC	1 cut(s)	260
PspXI	VCTCGAGB	1 cut(s)	24
PstI	CTGCAG	1 cut(s)	121
PsuI	RGATCY	1 cut(s)	276
SalI	GTCGAC	1 cut(s)	158
SatI	GCNGC	2 cut(s)	131, 174
Sau3AI	GATC	3 cut(s)	67, 145, 276
Sau96I	GGNCC	1 cut(s)	260
SchI	GAGTC	1 cut(s)	92
SetI	ASST	9 cut(s)	31, 35, 97, 135, 154, 226, 256, 290, 315
SfcI	CTRYAG	1 cut(s)	117
Sfr274I	CTCGAG	1 cut(s)	24
SinI	GGWCC	1 cut(s)	260
SlaI	CTCGAG	1 cut(s)	24
SmlI	CTYRAG	2 cut(s)	24, 80
SmoI	CTYRAG	2 cut(s)	24, 80
Sse9I	AATT	2 cut(s)	323, 366
SspMI	CTAG	3 cut(s)	30, 168, 237
StyI	CCWWGG	2 cut(s)	137, 195
TaaI	ACNGT	1 cut(s)	102
TaiI	ACGT	1 cut(s)	290
TaqI	TCGA	2 cut(s)	25, 159
TasI	AATT	2 cut(s)	323, 366
TfiI	GAWTC	2 cut(s)	16, 346
TscAI	CASTG	1 cut(s)	121
TseI	GCWGC	2 cut(s)	130, 173
TspDTI	ATGAA	3 cut(s)	17, 290, 359
TspRI	CASTG	1 cut(s)	121
Van91I	CCANNNNNTGG	1 cut(s)	272
VpaK11BI	GGWCC	1 cut(s)	260
XapI	RAATTY	1 cut(s)	366
XhoI	CTCGAG	1 cut(s)	24
XmiI	GTMKAC	1 cut(s)	159
XspI	CTAG	3 cut(s)	30, 168, 237
ZraI	GACGTC	1 cut(s)	288
Zsp2I	ATGCAT	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.