Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000945

Physical Location & Seq

Genomic Coordinates Reverse (-)

61117715 .. 61119359

Gene Structure 1645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00042810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGAGGGCAATCTATGGGAATGTAGCCACTGTAAATCCTTTGGATCCTGGTAGTGCTTCTACACATCAAAATGTCACCCATGTACGGTCGCAATTTCATGTTAATATAGAAGCAATGGAGACAATTGTTACAACCACAGCTCCCAAGCAAACAGAACCGTCAGTTGCACCGAGAAGCTCTCAAGCTGTTCCAATAGCTCCAGCTCCAGCTTCTCAGTCTGTTGCTGGGCAATCTAGTACCACACCAAGCTTTCCTTCTCAGACTTCAGAACATGATATATCTTCTAGTGTTGGTGTTTCTGAAACTGTAGAGGGTAATACAGCTGCTGTTCCAGAAAGTATTGAATCTTTTTCAGAATTGGCCAGGGAATCACTCTCAAATGTTAGCACCGCCACTATTGTTTCTGACTCGAAGGCTGAAACAAGCAGAAACCAGTCTGAACAAAGTTTGGTCGAAGGATACAAACGGGATGCTAATAGTCCTAGTATTACTTCAGAATCTACCTCTGTGAAAAGTTTGGAATCTGTTGACAAAGCAGCAGAGCAGTCTGTGGCAAAGGAAACCACTAAAGGCAATGTTATTGCAACTTCTGAAACTGCACAAGGAGGCAAAGATCAACATATCAGTTGCAATACAGAATTAGATGGGAGGATGCCTCTCCTAGCAGAAGTGGTAGCATTGATCAGCCCTCTGTTCCTTTTCAATCTAGAGAATTTTCAGGTACTAGTTCAAAGCATAAAGGATATTGGTAAGGGTAGTGATTCGCTTACAGTGTCATGTTCCAAGGATAAACCTCTTCCCAAACTGAGTATAACTAGGAGTACTATTTCAAAAGGGAAGAAGAAGAGAAAAGAAATTTCTTCTAAGGCTGATCCTGTTGGGGTAACATCTGATCAATATGAGGCTCATAAGAACCCTGAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 ko05416 map03013 map05416

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

308

Amino Acids

32.56

Weight (kDa)

5.38

Isoelectric Point (pI)

58.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60240 AT3G60240 AT3G60240
fragaria_vesca	FvH4_7g08960 FvH4_7g08960 FvH4_7g08960 FvH4_7g08960
malus_domestica	MD02G1222000.v1.1 MD07G1093700.v1.1 MD07G1093900.v1.1 MD07G1094000.v1.1 MD07G1094100.v1.1 MD07G1094200.v1.1 MD07G1094300.v1.1 MD07G1094400.v1.1
prunus_persica	Prupe.2G118700_v2.0.a1
pyrus_communis	pycom02g18790 pycom07g07670 pycom07g07680 pycom07g07690 pycom07g07730 pycom07g07740 pycom07g07750 pycom07g07760 pycom07g07770 pycom07g07780 pycom12419g00310 pycom15g30700
rosa_chinensis	RchiOBHm_Chr1g0344441 RchiOBHm_Chr1g0344451 RchiOBHm_Chr5g0038171
rosa_laevigata	RLG00000028873 RLG00000028874 RLG00000028899 RLG00000033837
rosa_multiflora	Rmu_sc0002670.1_g000001 Rmu_sc0010876.1_g000002 Rmu_sc0015248.1_g000009 Rmu_sc0015248.1_g000010
rosa_roxburghii	Rroxscaffold_1G00042800 Rroxscaffold_1G00042810 Rroxscaffold_4G00309730
rosa_rugosa	Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug05G0171200 Rorug05G0171300 Rorug05G0171300
rosa_samantha	Rh1AG190800 Rh1BG157200 Rh1BG157300 Rh1CG176100 Rh1DG188400 Rh1DG188600 Rh5AG258600 Rh5BG262200 Rh5CG294400 Rh5CG294500 Rh5CG294600 Rh5CG294700 Rh5DG271300 Rh6AG374400
rosa_wichuraiana	Rw1G015670 Rw5G024210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	390
AclWI	GGATC	3 cut(s)	38, 51, 866
AcoI	YGGCCR	1 cut(s)	360
AcsI	RAATTY	2 cut(s)	712, 855
AcuI	CTGAAG	2 cut(s)	249, 477
AfaI	GTAC	4 cut(s)	84, 238, 723, 823
AfiI	CCNNNNNNNGG	1 cut(s)	84
AgsI	TTSAA	4 cut(s)	344, 703, 731, 831
AhlI	ACTAGT	1 cut(s)	724
AjnI	CCWGG	2 cut(s)	46, 362
AjuI	GAANNNNNNNTTGG	2 cut(s)	238, 270
AluBI	AGCT	8 cut(s)	140, 177, 185, 197, 203, 209, 249, 323
AluI	AGCT	8 cut(s)	140, 177, 185, 197, 203, 209, 249, 323
Alw26I	GTCTC	1 cut(s)	113
AlwI	GGATC	3 cut(s)	38, 51, 866
AlwNI	CAGNNNCTG	1 cut(s)	326
AoxI	GGCC	1 cut(s)	360
ApeKI	GCWGC	2 cut(s)	323, 536
ApoI	RAATTY	2 cut(s)	712, 855
AsuHPI	GGTGA	1 cut(s)	67
BalI	TGGCCA	1 cut(s)	362
BamHI	GGATCC	1 cut(s)	43
BbvI	GCAGC	2 cut(s)	310, 548
BccI	CCATC	1 cut(s)	638
BciT130I	CCWGG	2 cut(s)	48, 364
BciVI	GTATCC	1 cut(s)	452
BclI	TGATCA	2 cut(s)	681, 892
BcoDI	GTCTC	1 cut(s)	113
BcuI	ACTAGT	1 cut(s)	724
BfaI	CTAG	8 cut(s)	234, 285, 483, 662, 707, 725, 816, 925
BfmI	CTRYAG	1 cut(s)	306
BfuI	GTATCC	1 cut(s)	452
BisI	GCNGC	2 cut(s)	324, 537
BlsI	GCNGC	2 cut(s)	325, 538
BmcAI	AGTACT	1 cut(s)	823
Bme1390I	CCNGG	2 cut(s)	48, 364
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	2 cut(s)	48, 364
BmsI	GCATC	2 cut(s)	460, 642
BplI	GAGNNNNNCTC	4 cut(s)	163, 195, 640, 672
BpmI	CTGGAG	2 cut(s)	183, 189
BpuEI	CTTGAG	1 cut(s)	165
BsaJI	CCNNGG	2 cut(s)	363, 783
BsaXI	ACNNNNNCTCC	2 cut(s)	124, 154
Bsc4I	CCNNNNNNNGG	1 cut(s)	84
Bse1I	ACTGG	1 cut(s)	433
Bse3DI	GCAATG	2 cut(s)	120, 580
BseBI	CCWGG	2 cut(s)	48, 364
BseDI	CCNNGG	2 cut(s)	363, 783
BseGI	GGATG	2 cut(s)	475, 657
BseLI	CCNNNNNNNGG	1 cut(s)	84
BseMI	GCAATG	2 cut(s)	120, 580
BseMII	CTCAG	3 cut(s)	227, 272, 797
BseNI	ACTGG	1 cut(s)	433
BseXI	GCAGC	2 cut(s)	310, 548
BseYI	CCCAGC	1 cut(s)	224
BsgI	GTGCAG	1 cut(s)	582
Bsh1285I	CGRYCG	1 cut(s)	89
BshFI	GGCC	1 cut(s)	362
BsiEI	CGRYCG	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	84
BsmAI	GTCTC	1 cut(s)	113
BsnI	GGCC	1 cut(s)	362
Bsp143I	GATC	5 cut(s)	43, 613, 681, 871, 892
BspACI	CCGC	1 cut(s)	390
BspANI	GGCC	1 cut(s)	362
BspCNI	CTCAG	3 cut(s)	226, 271, 798
BspLI	GGNNCC	1 cut(s)	45
BspPI	GGATC	3 cut(s)	38, 51, 866
BsrDI	GCAATG	2 cut(s)	120, 580
BsrI	ACTGG	1 cut(s)	433
BssECI	CCNNGG	2 cut(s)	363, 783
BssMI	GATC	5 cut(s)	43, 613, 681, 871, 892
BssT1I	CCWWGG	1 cut(s)	783
Bst2UI	CCWGG	2 cut(s)	48, 364
Bst4CI	ACNGT	5 cut(s)	31, 87, 159, 307, 772
Bst6I	CTCTTC	2 cut(s)	801, 839
BstDEI	CTNAG	4 cut(s)	213, 258, 806, 864
BstF5I	GGATG	2 cut(s)	475, 657
BstKTI	GATC	5 cut(s)	46, 616, 684, 874, 895
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	5 cut(s)	43, 613, 681, 871, 892
BstMCI	CGRYCG	1 cut(s)	89
BstNI	CCWGG	2 cut(s)	48, 364
BstSCI	CCNGG	2 cut(s)	46, 362
BstSFI	CTRYAG	1 cut(s)	306
BstV1I	GCAGC	2 cut(s)	310, 548
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
BsuI	GTATCC	1 cut(s)	452
BsuRI	GGCC	1 cut(s)	362
BtsCI	GGATG	2 cut(s)	475, 657
BtsIMutI	CAGTG	2 cut(s)	27, 777
CaiI	CAGNNNCTG	1 cut(s)	326
Csp6I	GTAC	4 cut(s)	83, 237, 722, 822
CviAII	CATG	4 cut(s)	80, 98, 272, 777
CviQI	GTAC	4 cut(s)	83, 237, 722, 822
DdeI	CTNAG	4 cut(s)	213, 258, 806, 864
DpnI	GATC	5 cut(s)	45, 615, 683, 873, 894
DpnII	GATC	5 cut(s)	43, 613, 681, 871, 892
EaeI	YGGCCR	1 cut(s)	360
Eam1104I	CTCTTC	2 cut(s)	801, 839
EarI	CTCTTC	2 cut(s)	801, 839
Eco130I	CCWWGG	1 cut(s)	783
Eco57I	CTGAAG	2 cut(s)	249, 477
EcoRII	CCWGG	2 cut(s)	46, 362
EcoT14I	CCWWGG	1 cut(s)	783
ErhI	CCWWGG	1 cut(s)	783
FaeI	CATG	4 cut(s)	83, 101, 275, 780
FalI	AAGNNNNNCTT	2 cut(s)	238, 270
FatI	CATG	4 cut(s)	79, 97, 271, 776
FbaI	TGATCA	2 cut(s)	681, 892
Fnu4HI	GCNGC	2 cut(s)	324, 537
FokI	GGATG	2 cut(s)	482, 664
Fsp4HI	GCNGC	2 cut(s)	324, 537
FspBI	CTAG	8 cut(s)	234, 285, 483, 662, 707, 725, 816, 925
GluI	GCNGC	2 cut(s)	324, 537
GsaI	CCCAGC	1 cut(s)	228
GsuI	CTGGAG	2 cut(s)	183, 189
HaeIII	GGCC	1 cut(s)	362
Hin1II	CATG	4 cut(s)	83, 101, 275, 780
HincII	GTYRAC	1 cut(s)	529
HindII	GTYRAC	1 cut(s)	529
HindIII	AAGCTT	1 cut(s)	247
HinfI	GANTC	6 cut(s)	344, 368, 407, 497, 521, 761
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	529
Hpy188I	TCNGA	9 cut(s)	261, 268, 301, 355, 406, 439, 496, 592, 892
Hpy188III	TCNNGA	2 cut(s)	332, 707
Hpy8I	GTNNAC	1 cut(s)	529
HpyAV	CCTTC	3 cut(s)	264, 406, 449
HpyCH4III	ACNGT	5 cut(s)	31, 87, 159, 307, 772
HpyCH4V	TGCA	4 cut(s)	167, 584, 599, 630
HpyF3I	CTNAG	4 cut(s)	213, 258, 806, 864
Hsp92II	CATG	4 cut(s)	83, 101, 275, 780
Ksp22I	TGATCA	2 cut(s)	681, 892
Kzo9I	GATC	5 cut(s)	43, 613, 681, 871, 892
LmnI	GCTCC	3 cut(s)	145, 202, 208
Lsp1109I	GCAGC	2 cut(s)	310, 548
LweI	GCATC	2 cut(s)	460, 642
MaeI	CTAG	8 cut(s)	234, 285, 483, 662, 707, 725, 816, 925
MaeIII	GTNAC	3 cut(s)	73, 127, 883
MalI	GATC	5 cut(s)	45, 615, 683, 873, 894
MboI	GATC	5 cut(s)	43, 613, 681, 871, 892
MboII	GAAGA	6 cut(s)	273, 788, 850, 852, 853, 856
MfeI	CAATTG	1 cut(s)	123
MflI	RGATCY	1 cut(s)	43
MlsI	TGGCCA	1 cut(s)	362
MluCI	AATT	6 cut(s)	92, 123, 356, 638, 712, 855
MluNI	TGGCCA	1 cut(s)	362
MlyI	GAGTC	1 cut(s)	401
MnlI	CCTC	8 cut(s)	304, 514, 599, 642, 666, 699, 804, 895
Mox20I	TGGCCA	1 cut(s)	362
MscI	TGGCCA	1 cut(s)	362
MseI	TTAA	1 cut(s)	102
MslI	CAYNNNNRTG	1 cut(s)	69
Msp20I	TGGCCA	1 cut(s)	362
MspA1I	CMGCKG	1 cut(s)	323
MspR9I	CCNGG	2 cut(s)	48, 364
MunI	CAATTG	1 cut(s)	123
MvaI	CCWGG	2 cut(s)	48, 364
NdeII	GATC	5 cut(s)	43, 613, 681, 871, 892
NlaIII	CATG	4 cut(s)	83, 101, 275, 780
NlaIV	GGNNCC	1 cut(s)	45
NmuCI	GTSAC	1 cut(s)	73
PfeI	GAWTC	5 cut(s)	344, 368, 497, 521, 761
PkrI	GCNGC	2 cut(s)	325, 538
PleI	GAGTC	1 cut(s)	401
PpsI	GAGTC	1 cut(s)	401
Psp6I	CCWGG	2 cut(s)	46, 362
PspFI	CCCAGC	1 cut(s)	224
PspGI	CCWGG	2 cut(s)	46, 362
PspN4I	GGNNCC	1 cut(s)	45
PstNI	CAGNNNCTG	1 cut(s)	326
PsuI	RGATCY	1 cut(s)	43
PvuII	CAGCTG	1 cut(s)	323
RsaI	GTAC	4 cut(s)	84, 238, 723, 823
RsaNI	GTAC	4 cut(s)	83, 237, 722, 822
RseI	CAYNNNNRTG	1 cut(s)	69
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	2 cut(s)	324, 537
Sau3AI	GATC	5 cut(s)	43, 613, 681, 871, 892
ScaI	AGTACT	1 cut(s)	823
SchI	GAGTC	1 cut(s)	401
ScrFI	CCNGG	2 cut(s)	48, 364
SfaNI	GCATC	2 cut(s)	460, 642
SfcI	CTRYAG	1 cut(s)	306
SmiMI	CAYNNNNRTG	1 cut(s)	69
SmlI	CTYRAG	1 cut(s)	180
SmoI	CTYRAG	1 cut(s)	180
SpeI	ACTAGT	1 cut(s)	724
Sse9I	AATT	6 cut(s)	92, 123, 356, 638, 712, 855
SsiI	CCGC	1 cut(s)	390
SspMI	CTAG	8 cut(s)	234, 285, 483, 662, 707, 725, 816, 925
StyD4I	CCNGG	2 cut(s)	46, 362
StyI	CCWWGG	1 cut(s)	783
TaaI	ACNGT	5 cut(s)	31, 87, 159, 307, 772
TaqI	TCGA	2 cut(s)	410, 453
TasI	AATT	6 cut(s)	92, 123, 356, 638, 712, 855
TatI	WGTACW	1 cut(s)	821
TfiI	GAWTC	5 cut(s)	344, 368, 497, 521, 761
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TscAI	CASTG	2 cut(s)	34, 777
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	2 cut(s)	323, 536
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	1 cut(s)	86
TspRI	CASTG	2 cut(s)	34, 777
XapI	RAATTY	2 cut(s)	712, 855
XbaI	TCTAGA	1 cut(s)	706
XspI	CTAG	8 cut(s)	234, 285, 483, 662, 707, 725, 816, 925
ZrmI	AGTACT	1 cut(s)	823

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.