Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0000945

Physical Location & Seq

Genomic Coordinates Forward (+)

7020210 .. 7022458

Gene Structure 2249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g07690.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGTTGAAGGATGCAATTGATTTGAGAAAGAATAAATGGCAGCAGGGGAGCAAAGTTGAAGGACCAAAAAAGATTGAGGAAGTGCACAGAGATGCTGCACAAGAACTACAGGCACAGTCTAGTAGGCTGGCCCGTGGTCCTGGAATCAATCCATCAGCTAGAAGGGGGCCTCCTAGTCCAAGAGGATCAACTATGTTATCTTCACCTAATGTTCATAGTTTCGATAGAACTCTTCCAACTTCACCACCCACACGTGCACATGGAGCAGCTTTAACACAAAATGTTCCTTCAGAAAATGTGTTGACTGAAGACAGTCTTAGAGATATGTCTTTGGCAGCGATTAGAGAATTTTACAGTGCTCAAGACGAGAAAGAGGTTGCTTTATGCATTAAAGAGTTGAACTCACCAAGTTTCCATCCGTTGATGATATCTCTTTGGGTCATAGACTCTTTTGAGAGGAAGGACGCTGAAAGAGATCTCTTGGCAAAGCTTCTAATCAACCTCACAAAGACCAATGATGGAACTTTGAGTCAATCTCAGCTCATCAAGGGGTTTGAAATTGTTCTGTCGACCTTAGAGGATACGGTGATTGATGCCCCGAGAGCACCAGTGTTTCTTGGCCTTATCTTTGCCAAGGTCATTTTAGGATTGTCGTTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 ko05416 map03013 map05416

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

221

Amino Acids

24.24

Weight (kDa)

6.92

Isoelectric Point (pI)

51.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60240 AT3G60240 AT3G60240
fragaria_vesca	FvH4_7g08960 FvH4_7g08960 FvH4_7g08960 FvH4_7g08960
malus_domestica	MD02G1222000.v1.1 MD07G1093700.v1.1 MD07G1093900.v1.1 MD07G1094000.v1.1 MD07G1094100.v1.1 MD07G1094200.v1.1 MD07G1094300.v1.1 MD07G1094400.v1.1
prunus_persica	Prupe.2G118700_v2.0.a1
pyrus_communis	pycom02g18790 pycom07g07670 pycom07g07680 pycom07g07690 pycom07g07730 pycom07g07740 pycom07g07750 pycom07g07760 pycom07g07770 pycom07g07780 pycom12419g00310 pycom15g30700
rosa_chinensis	RchiOBHm_Chr1g0344441 RchiOBHm_Chr1g0344451 RchiOBHm_Chr5g0038171
rosa_laevigata	RLG00000028873 RLG00000028874 RLG00000028899 RLG00000033837
rosa_multiflora	Rmu_sc0002670.1_g000001 Rmu_sc0010876.1_g000002 Rmu_sc0015248.1_g000009 Rmu_sc0015248.1_g000010
rosa_roxburghii	Rroxscaffold_1G00042800 Rroxscaffold_1G00042810 Rroxscaffold_4G00309730
rosa_rugosa	Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug05G0171200 Rorug05G0171300 Rorug05G0171300
rosa_samantha	Rh1AG190800 Rh1BG157200 Rh1BG157300 Rh1CG176100 Rh1DG188400 Rh1DG188600 Rh5AG258600 Rh5BG262200 Rh5CG294400 Rh5CG294500 Rh5CG294600 Rh5CG294700 Rh5DG271300 Rh6AG374400
rosa_wichuraiana	Rw1G015670 Rw5G024210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	569
AclWI	GGATC	1 cut(s)	193
AcsI	RAATTY	1 cut(s)	347
AcuI	CTGAAG	2 cut(s)	273, 327
AcvI	CACGTG	1 cut(s)	254
AflIII	ACRYGT	1 cut(s)	251
AgsI	TTSAA	4 cut(s)	7, 59, 400, 557
AjnI	CCWGG	1 cut(s)	139
AluBI	AGCT	4 cut(s)	158, 269, 490, 541
AluI	AGCT	4 cut(s)	158, 269, 490, 541
Alw21I	GWGCWC	4 cut(s)	87, 259, 361, 607
Alw44I	GTGCAC	2 cut(s)	83, 255
AlwI	GGATC	1 cut(s)	193
Ama87I	CYCGRG	1 cut(s)	598
AoxI	GGCC	3 cut(s)	129, 167, 619
ApaLI	GTGCAC	2 cut(s)	83, 255
ApeKI	GCWGC	4 cut(s)	40, 95, 266, 335
ApoI	RAATTY	1 cut(s)	347
Asp700I	GAANNNNTTC	1 cut(s)	561
AspS9I	GGNCC	4 cut(s)	62, 130, 137, 167
AsuHPI	GGTGA	4 cut(s)	195, 234, 396, 598
AvaI	CYCGRG	1 cut(s)	598
AvaII	GGWCC	2 cut(s)	62, 137
BaeGI	GKGCMC	2 cut(s)	87, 259
BbrPI	CACGTG	1 cut(s)	254
BbsI	GAAGAC	1 cut(s)	315
Bbv12I	GWGCWC	4 cut(s)	87, 259, 361, 607
BbvI	GCAGC	4 cut(s)	52, 82, 278, 347
BccI	CCATC	3 cut(s)	160, 423, 512
BciT130I	CCWGG	1 cut(s)	141
BciVI	GTATCC	1 cut(s)	574
BfaI	CTAG	3 cut(s)	120, 159, 174
BfmI	CTRYAG	1 cut(s)	107
BfuI	GTATCC	1 cut(s)	574
BglII	AGATCT	1 cut(s)	475
BisI	GCNGC	4 cut(s)	41, 96, 267, 336
BlsI	GCNGC	4 cut(s)	42, 97, 268, 337
Bme1390I	CCNGG	1 cut(s)	141
Bme18I	GGWCC	2 cut(s)	62, 137
BmeT110I	CYCGRG	1 cut(s)	598
BmgT120I	GGNCC	4 cut(s)	62, 130, 137, 167
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	1 cut(s)	141
BmsI	GCATC	2 cut(s)	82, 583
BpiI	GAAGAC	1 cut(s)	315
BplI	GAGNNNNNCTC	4 cut(s)	386, 418, 520, 552
BpuEI	CTTGAG	1 cut(s)	345
BsaAI	YACGTR	1 cut(s)	254
BsaJI	CCNNGG	2 cut(s)	133, 633
Bse1I	ACTGG	1 cut(s)	608
BseBI	CCWGG	1 cut(s)	141
BseDI	CCNNGG	2 cut(s)	133, 633
BseGI	GGATG	2 cut(s)	16, 415
BseMII	CTCAG	1 cut(s)	551
BseNI	ACTGG	1 cut(s)	608
BseSI	GKGCMC	2 cut(s)	87, 259
BseXI	GCAGC	4 cut(s)	52, 82, 278, 347
BsgI	GTGCAG	1 cut(s)	81
BshFI	GGCC	3 cut(s)	131, 169, 621
BsiHKAI	GWGCWC	4 cut(s)	87, 259, 361, 607
BsiHKCI	CYCGRG	1 cut(s)	598
BsnI	GGCC	3 cut(s)	131, 169, 621
BsoBI	CYCGRG	1 cut(s)	598
Bsp1286I	GDGCHC	4 cut(s)	87, 259, 361, 607
Bsp143I	GATC	2 cut(s)	185, 475
BspANI	GGCC	3 cut(s)	131, 169, 621
BspCNI	CTCAG	1 cut(s)	550
BspLI	GGNNCC	1 cut(s)	168
BspPI	GGATC	1 cut(s)	193
BsrI	ACTGG	1 cut(s)	608
BssECI	CCNNGG	2 cut(s)	133, 633
BssMI	GATC	2 cut(s)	185, 475
BssT1I	CCWWGG	1 cut(s)	633
Bst2UI	CCWGG	1 cut(s)	141
Bst4CI	ACNGT	4 cut(s)	117, 314, 356, 586
Bst6I	CTCTTC	1 cut(s)	237
BstBAI	YACGTR	1 cut(s)	254
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	3 cut(s)	317, 537, 574
BstDSI	CCRYGG	1 cut(s)	133
BstF5I	GGATG	2 cut(s)	16, 415
BstKTI	GATC	2 cut(s)	188, 478
BstMBI	GATC	2 cut(s)	185, 475
BstMWI	GCNNNNNNNGC	2 cut(s)	263, 602
BstNI	CCWGG	1 cut(s)	141
BstSCI	CCNGG	1 cut(s)	139
BstSFI	CTRYAG	1 cut(s)	107
BstSLI	GKGCMC	2 cut(s)	87, 259
BstV1I	GCAGC	4 cut(s)	52, 82, 278, 347
BstV2I	GAAGAC	1 cut(s)	315
BstX2I	RGATCY	1 cut(s)	475
BstYI	RGATCY	1 cut(s)	475
BsuI	GTATCC	1 cut(s)	574
BsuRI	GGCC	3 cut(s)	131, 169, 621
BtgI	CCRYGG	1 cut(s)	133
BtsCI	GGATG	2 cut(s)	16, 415
BtsIMutI	CAGTG	2 cut(s)	361, 615
Cac8I	GCNNGC	1 cut(s)	129
Cfr13I	GGNCC	4 cut(s)	62, 130, 137, 167
CseI	GACGC	1 cut(s)	473
CviAII	CATG	1 cut(s)	260
CviJI	RGCY	8 cut(s)	127, 131, 158, 169, 269, 490, 541, 621
CviKI_1	RGCY	8 cut(s)	127, 131, 158, 169, 269, 490, 541, 621
DdeI	CTNAG	3 cut(s)	317, 537, 574
DpnI	GATC	2 cut(s)	187, 477
DpnII	GATC	2 cut(s)	185, 475
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Eco130I	CCWWGG	1 cut(s)	633
Eco32I	GATATC	1 cut(s)	429
Eco47I	GGWCC	2 cut(s)	62, 137
Eco57I	CTGAAG	2 cut(s)	273, 327
Eco72I	CACGTG	1 cut(s)	254
Eco88I	CYCGRG	1 cut(s)	598
EcoO109I	RGGNCCY	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	139
EcoRV	GATATC	1 cut(s)	429
EcoT14I	CCWWGG	1 cut(s)	633
EcoT22I	ATGCAT	1 cut(s)	389
ErhI	CCWWGG	1 cut(s)	633
FaeI	CATG	1 cut(s)	263
FaiI	YATR	6 cut(s)	194, 216, 261, 326, 385, 443
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FatI	CATG	1 cut(s)	259
FblI	GTMKAC	1 cut(s)	569
Fnu4HI	GCNGC	4 cut(s)	41, 96, 267, 336
FokI	GGATG	2 cut(s)	23, 402
Fsp4HI	GCNGC	4 cut(s)	41, 96, 267, 336
FspBI	CTAG	3 cut(s)	120, 159, 174
GluI	GCNGC	4 cut(s)	41, 96, 267, 336
HaeIII	GGCC	3 cut(s)	131, 169, 621
HgaI	GACGC	1 cut(s)	473
Hin1II	CATG	1 cut(s)	263
HincII	GTYRAC	2 cut(s)	303, 570
HindII	GTYRAC	2 cut(s)	303, 570
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	3 cut(s)	144, 446, 529
HphI	GGTGA	4 cut(s)	195, 234, 396, 598
Hpy166II	GTNNAC	4 cut(s)	85, 257, 303, 570
Hpy188I	TCNGA	1 cut(s)	292
Hpy188III	TCNNGA	1 cut(s)	362
Hpy8I	GTNNAC	4 cut(s)	85, 257, 303, 570
HpyAV	CCTTC	4 cut(s)	53, 156, 297, 454
HpyCH4III	ACNGT	4 cut(s)	117, 314, 356, 586
HpyCH4IV	ACGT	1 cut(s)	253
HpyCH4V	TGCA	5 cut(s)	14, 85, 98, 257, 387
HpyF10VI	GCNNNNNNNGC	2 cut(s)	263, 602
HpyF3I	CTNAG	3 cut(s)	317, 537, 574
HpySE526I	ACGT	1 cut(s)	253
Hsp92II	CATG	1 cut(s)	263
Kzo9I	GATC	2 cut(s)	185, 475
LmnI	GCTCC	2 cut(s)	48, 263
LpnPI	CCDG	6 cut(s)	29, 95, 113, 126, 153, 621
Lsp1109I	GCAGC	4 cut(s)	52, 82, 278, 347
LweI	GCATC	2 cut(s)	82, 583
MaeI	CTAG	3 cut(s)	120, 159, 174
MaeII	ACGT	1 cut(s)	253
MalI	GATC	2 cut(s)	187, 477
MboI	GATC	2 cut(s)	185, 475
MboII	GAAGA	3 cut(s)	192, 224, 320
MfeI	CAATTG	1 cut(s)	15
MflI	RGATCY	1 cut(s)	475
MhlI	GDGCHC	4 cut(s)	87, 259, 361, 607
MluCI	AATT	3 cut(s)	15, 347, 558
MlyI	GAGTC	2 cut(s)	440, 538
MmeI	TCCRAC	1 cut(s)	260
MnlI	CCTC	7 cut(s)	70, 176, 180, 367, 450, 512, 571
Mph1103I	ATGCAT	1 cut(s)	389
MroXI	GAANNNNTTC	1 cut(s)	561
MseI	TTAA	2 cut(s)	272, 390
MslI	CAYNNNNRTG	1 cut(s)	90
MspR9I	CCNGG	1 cut(s)	141
MunI	CAATTG	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	2 cut(s)	263, 602
NdeII	GATC	2 cut(s)	185, 475
NlaIII	CATG	1 cut(s)	263
NlaIV	GGNNCC	1 cut(s)	168
NsiI	ATGCAT	1 cut(s)	389
PdmI	GAANNNNTTC	1 cut(s)	561
PfeI	GAWTC	1 cut(s)	144
PfoI	TCCNGGA	1 cut(s)	139
PkrI	GCNGC	4 cut(s)	42, 97, 268, 337
PleI	GAGTC	2 cut(s)	440, 537
PmaCI	CACGTG	1 cut(s)	254
PmlI	CACGTG	1 cut(s)	254
PpsI	GAGTC	2 cut(s)	440, 537
Ppu21I	YACGTR	1 cut(s)	254
Psp6I	CCWGG	1 cut(s)	139
PspCI	CACGTG	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	139
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	4 cut(s)	62, 130, 137, 167
PsuI	RGATCY	1 cut(s)	475
RseI	CAYNNNNRTG	1 cut(s)	90
SalI	GTCGAC	1 cut(s)	568
SaqAI	TTAA	2 cut(s)	272, 390
SatI	GCNGC	4 cut(s)	41, 96, 267, 336
Sau3AI	GATC	2 cut(s)	185, 475
Sau96I	GGNCC	4 cut(s)	62, 130, 137, 167
SchI	GAGTC	2 cut(s)	440, 538
ScrFI	CCNGG	1 cut(s)	141
SduI	GDGCHC	4 cut(s)	87, 259, 361, 607
SfaNI	GCATC	2 cut(s)	82, 583
SfcI	CTRYAG	1 cut(s)	107
SinI	GGWCC	2 cut(s)	62, 137
SmiMI	CAYNNNNRTG	1 cut(s)	90
SmlI	CTYRAG	1 cut(s)	360
SmoI	CTYRAG	1 cut(s)	360
Sse9I	AATT	3 cut(s)	15, 347, 558
SspMI	CTAG	3 cut(s)	120, 159, 174
StyD4I	CCNGG	1 cut(s)	139
StyI	CCWWGG	1 cut(s)	633
TaaI	ACNGT	4 cut(s)	117, 314, 356, 586
TaiI	ACGT	1 cut(s)	256
TaqI	TCGA	2 cut(s)	222, 569
TasI	AATT	3 cut(s)	15, 347, 558
TfiI	GAWTC	1 cut(s)	144
Tru1I	TTAA	2 cut(s)	272, 390
Tru9I	TTAA	2 cut(s)	272, 390
TscAI	CASTG	2 cut(s)	361, 615
TseI	GCWGC	4 cut(s)	40, 95, 266, 335
TspDTI	ATGAA	1 cut(s)	203
TspGWI	ACGGA	1 cut(s)	408
TspRI	CASTG	2 cut(s)	361, 615
VneI	GTGCAC	2 cut(s)	83, 255
VpaK11BI	GGWCC	2 cut(s)	62, 137
XapI	RAATTY	1 cut(s)	347
XmiI	GTMKAC	1 cut(s)	569
XmnI	GAANNNNTTC	1 cut(s)	561
XspI	CTAG	3 cut(s)	120, 159, 174
Zsp2I	ATGCAT	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.