Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015248.1

Orthogroup ID

OG0000945

Physical Location & Seq

Genomic Coordinates Reverse (-)

37121 .. 39026

Gene Structure 1906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015248.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atgttcatctggtcccccagttacacttcctgtttgactatctccgaactcacagtgttccaacaaagaagggttgctgctatgaatagcaatatcagtggccaacttcttcagaggtctgtgatatctgaaaatggcaggctttcatgcacaagcagttcaaactcacctgataccatgactgacagaggtgccggacttgtagaacaacacaatggtagtgaagaaacgggatacttaatttcacacaaccgttttgatgatgatggccatctcaagagaaccggaactctctggacggcatcagcacacattatcactgaggtgattgggtctggaatcctgtccgtggcttgggccatagctcagcttggatggattgcaggtcctattgccatgctcttgttttctggagtgacttactacacttcaactctgctctgtgcttgctatcgctccagagacaccggacaaaggaacttcacatacatgcaggctgttcaatctaccctcagatcggaggagctaagctcaagatttgtggagttgttcagtacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015174 GO:0015318 GO:0015711 GO:0015802 GO:0015809 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039 GO:1990822

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

186

Amino Acids

20.51

Weight (kDa)

6.06

Isoelectric Point (pI)

58.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60240 AT3G60240 AT3G60240
fragaria_vesca	FvH4_7g08960 FvH4_7g08960 FvH4_7g08960 FvH4_7g08960
malus_domestica	MD02G1222000.v1.1 MD07G1093700.v1.1 MD07G1093900.v1.1 MD07G1094000.v1.1 MD07G1094100.v1.1 MD07G1094200.v1.1 MD07G1094300.v1.1 MD07G1094400.v1.1
prunus_persica	Prupe.2G118700_v2.0.a1
pyrus_communis	pycom02g18790 pycom07g07670 pycom07g07680 pycom07g07690 pycom07g07730 pycom07g07740 pycom07g07750 pycom07g07760 pycom07g07770 pycom07g07780 pycom12419g00310 pycom15g30700
rosa_chinensis	RchiOBHm_Chr1g0344441 RchiOBHm_Chr1g0344451 RchiOBHm_Chr5g0038171
rosa_laevigata	RLG00000028873 RLG00000028874 RLG00000028899 RLG00000033837
rosa_multiflora	Rmu_sc0002670.1_g000001 Rmu_sc0010876.1_g000002 Rmu_sc0015248.1_g000009 Rmu_sc0015248.1_g000010
rosa_roxburghii	Rroxscaffold_1G00042800 Rroxscaffold_1G00042810 Rroxscaffold_4G00309730
rosa_rugosa	Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug05G0171200 Rorug05G0171300 Rorug05G0171300
rosa_samantha	Rh1AG190800 Rh1BG157200 Rh1BG157300 Rh1CG176100 Rh1DG188400 Rh1DG188600 Rh5AG258600 Rh5BG262200 Rh5CG294400 Rh5CG294500 Rh5CG294600 Rh5CG294700 Rh5DG271300 Rh6AG374400
rosa_wichuraiana	Rw1G015670 Rw5G024210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	374
AccB1I	GGYRCC	1 cut(s)	191
AcoI	YGGCCR	2 cut(s)	100, 268
AcuI	CTGAAG	1 cut(s)	95
AfaI	GTAC	1 cut(s)	556
AfiI	CCNNNNNNNGG	4 cut(s)	349, 354, 474, 517
AgsI	TTSAA	3 cut(s)	162, 432, 503
AleI	CACNNNNGTG	1 cut(s)	323
AluBI	AGCT	4 cut(s)	365, 370, 526, 531
AluI	AGCT	4 cut(s)	365, 370, 526, 531
Alw26I	GTCTC	1 cut(s)	456
AoxI	GGCC	3 cut(s)	100, 268, 357
ApeKI	GCWGC	1 cut(s)	77
AspS9I	GGNCC	3 cut(s)	12, 357, 386
AsuHPI	GGTGA	2 cut(s)	159, 337
AvaII	GGWCC	2 cut(s)	12, 386
BalI	TGGCCA	2 cut(s)	102, 270
BanI	GGYRCC	1 cut(s)	191
BbvI	GCAGC	1 cut(s)	64
BccI	CCATC	3 cut(s)	260, 279, 369
BceAI	ACGGC	1 cut(s)	315
BciVI	GTATCC	1 cut(s)	227
BcoDI	GTCTC	1 cut(s)	456
BfuAI	ACCTGC	1 cut(s)	374
BfuI	GTATCC	1 cut(s)	227
BisI	GCNGC	1 cut(s)	78
BlpI	GCTNAGC	2 cut(s)	366, 527
BlsI	GCNGC	1 cut(s)	79
BmcAI	AGTACT	1 cut(s)	556
Bme18I	GGWCC	2 cut(s)	12, 386
BmgT120I	GGNCC	3 cut(s)	12, 357, 386
BmiI	GGNNCC	2 cut(s)	14, 193
BmrI	ACTGGG	1 cut(s)	12
BmsI	GCATC	1 cut(s)	311
BmuI	ACTGGG	1 cut(s)	12
BplI	GAGNNNNNCTC	2 cut(s)	515, 547
BpmI	CTGGAG	2 cut(s)	432, 442
Bpu1102I	GCTNAGC	2 cut(s)	366, 527
BpuEI	CTTGAG	2 cut(s)	260, 517
BsaBI	GATNNNNATC	1 cut(s)	270
BsaJI	CCNNGG	1 cut(s)	348
BsaWI	WCCGGW	2 cut(s)	284, 467
Bsc4I	CCNNNNNNNGG	4 cut(s)	349, 354, 474, 517
Bse1I	ACTGG	1 cut(s)	18
Bse8I	GATNNNNATC	1 cut(s)	270
BseDI	CCNNGG	1 cut(s)	348
BseGI	GGATG	1 cut(s)	380
BseJI	GATNNNNATC	1 cut(s)	270
BseLI	CCNNNNNNNGG	4 cut(s)	349, 354, 474, 517
BseMII	CTCAG	3 cut(s)	312, 380, 526
BseNI	ACTGG	1 cut(s)	18
BseRI	GAGGAG	1 cut(s)	536
BseXI	GCAGC	1 cut(s)	64
BshFI	GGCC	3 cut(s)	102, 270, 359
BshNI	GGYRCC	1 cut(s)	191
BsiSI	CCGG	3 cut(s)	195, 285, 468
BslI	CCNNNNNNNGG	4 cut(s)	349, 354, 474, 517
BsmAI	GTCTC	1 cut(s)	456
BsnI	GGCC	3 cut(s)	102, 270, 359
Bsp143I	GATC	1 cut(s)	515
Bsp1720I	GCTNAGC	2 cut(s)	366, 527
BspANI	GGCC	3 cut(s)	102, 270, 359
BspCNI	CTCAG	3 cut(s)	313, 379, 525
BspLI	GGNNCC	2 cut(s)	14, 193
BspMI	ACCTGC	1 cut(s)	374
BspT107I	GGYRCC	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	18
BssECI	CCNNGG	1 cut(s)	348
BssMI	GATC	1 cut(s)	515
Bst4CI	ACNGT	2 cut(s)	55, 254
BstC8I	GCNNGC	3 cut(s)	140, 448, 495
BstDEI	CTNAG	4 cut(s)	321, 366, 512, 527
BstDSI	CCRYGG	1 cut(s)	348
BstF5I	GGATG	1 cut(s)	380
BstKTI	GATC	1 cut(s)	518
BstMAI	GTCTC	1 cut(s)	456
BstMBI	GATC	1 cut(s)	515
BstNSI	RCATGY	1 cut(s)	493
BstV1I	GCAGC	1 cut(s)	64
BsuI	GTATCC	1 cut(s)	227
BsuRI	GGCC	3 cut(s)	102, 270, 359
BtgI	CCRYGG	1 cut(s)	348
BtsCI	GGATG	1 cut(s)	380
BtsIMutI	CAGTG	3 cut(s)	60, 103, 318
BveI	ACCTGC	1 cut(s)	374
Cac8I	GCNNGC	3 cut(s)	140, 448, 495
Cfr13I	GGNCC	3 cut(s)	12, 357, 386
Csp6I	GTAC	1 cut(s)	555
CspCI	CAANNNNNGTGG	4 cut(s)	79, 114, 522, 557
CviAII	CATG	4 cut(s)	147, 178, 397, 490
CviQI	GTAC	1 cut(s)	555
DdeI	CTNAG	4 cut(s)	321, 366, 512, 527
DpnI	GATC	1 cut(s)	517
DpnII	GATC	1 cut(s)	515
EaeI	YGGCCR	2 cut(s)	100, 268
Eco32I	GATATC	1 cut(s)	126
Eco47I	GGWCC	2 cut(s)	12, 386
Eco57I	CTGAAG	1 cut(s)	95
EcoO109I	RGGNCCY	1 cut(s)	386
EcoRV	GATATC	1 cut(s)	126
FaeI	CATG	4 cut(s)	150, 181, 400, 493
FaiI	YATR	7 cut(s)	83, 148, 179, 362, 398, 487, 491
FatI	CATG	4 cut(s)	146, 177, 396, 489
Fnu4HI	GCNGC	1 cut(s)	78
FokI	GGATG	1 cut(s)	387
Fsp4HI	GCNGC	1 cut(s)	78
GluI	GCNGC	1 cut(s)	78
GsuI	CTGGAG	2 cut(s)	432, 442
HaeIII	GGCC	3 cut(s)	102, 270, 359
HapII	CCGG	3 cut(s)	195, 285, 468
Hin1II	CATG	4 cut(s)	150, 181, 400, 493
HinfI	GANTC	1 cut(s)	339
HpaII	CCGG	3 cut(s)	195, 285, 468
HphI	GGTGA	2 cut(s)	159, 337
Hpy188I	TCNGA	5 cut(s)	46, 114, 130, 515, 520
Hpy188III	TCNNGA	6 cut(s)	277, 295, 336, 411, 459, 534
HpyAV	CCTTC	1 cut(s)	63
HpyCH4III	ACNGT	2 cut(s)	55, 254
HpyCH4V	TGCA	3 cut(s)	150, 383, 493
HpyF3I	CTNAG	4 cut(s)	321, 366, 512, 527
Hsp92II	CATG	4 cut(s)	150, 181, 400, 493
Kzo9I	GATC	1 cut(s)	515
LmnI	GCTCC	2 cut(s)	461, 523
Lsp1109I	GCAGC	1 cut(s)	64
LweI	GCATC	1 cut(s)	311
MaeIII	GTNAC	2 cut(s)	20, 415
MalI	GATC	1 cut(s)	517
MboI	GATC	1 cut(s)	515
MboII	GAAGA	2 cut(s)	101, 236
MlsI	TGGCCA	2 cut(s)	102, 270
MluCI	AATT	1 cut(s)	240
MluNI	TGGCCA	2 cut(s)	102, 270
MmeI	TCCRAC	1 cut(s)	85
MnlI	CCTC	5 cut(s)	108, 182, 316, 514, 521
Mox20I	TGGCCA	2 cut(s)	102, 270
MscI	TGGCCA	2 cut(s)	102, 270
MseI	TTAA	1 cut(s)	239
MslI	CAYNNNNRTG	2 cut(s)	323, 488
Msp20I	TGGCCA	2 cut(s)	102, 270
MspI	CCGG	3 cut(s)	195, 285, 468
NdeII	GATC	1 cut(s)	515
NlaIII	CATG	4 cut(s)	150, 181, 400, 493
NlaIV	GGNNCC	2 cut(s)	14, 193
NmuCI	GTSAC	1 cut(s)	415
NspI	RCATGY	1 cut(s)	493
OliI	CACNNNNGTG	1 cut(s)	323
PfeI	GAWTC	1 cut(s)	339
PkrI	GCNGC	1 cut(s)	79
PpuMI	RGGWCCY	1 cut(s)	386
Psp5II	RGGWCCY	1 cut(s)	386
PspN4I	GGNNCC	2 cut(s)	14, 193
PspPI	GGNCC	3 cut(s)	12, 357, 386
PspPPI	RGGWCCY	1 cut(s)	386
PsrI	GAACNNNNNNTAC	2 cut(s)	470, 502
RsaI	GTAC	1 cut(s)	556
RsaNI	GTAC	1 cut(s)	555
RseI	CAYNNNNRTG	2 cut(s)	323, 488
SaqAI	TTAA	1 cut(s)	239
SatI	GCNGC	1 cut(s)	78
Sau3AI	GATC	1 cut(s)	515
Sau96I	GGNCC	3 cut(s)	12, 357, 386
ScaI	AGTACT	1 cut(s)	556
SetI	ASST	9 cut(s)	119, 172, 193, 327, 367, 372, 388, 528, 533
SfaNI	GCATC	1 cut(s)	311
SinI	GGWCC	2 cut(s)	12, 386
SmiMI	CAYNNNNRTG	2 cut(s)	323, 488
SmlI	CTYRAG	2 cut(s)	275, 532
SmoI	CTYRAG	2 cut(s)	275, 532
Sse9I	AATT	1 cut(s)	240
TaaI	ACNGT	2 cut(s)	55, 254
TasI	AATT	1 cut(s)	240
TatI	WGTACW	1 cut(s)	554
TfiI	GAWTC	1 cut(s)	339
Tru1I	TTAA	1 cut(s)	239
Tru9I	TTAA	1 cut(s)	239
TscAI	CASTG	3 cut(s)	60, 103, 325
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	1 cut(s)	77
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	2 cut(s)	98, 135
TspGWI	ACGGA	1 cut(s)	337
TspRI	CASTG	3 cut(s)	60, 103, 325
VpaK11BI	GGWCC	2 cut(s)	12, 386
XceI	RCATGY	1 cut(s)	493
ZrmI	AGTACT	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.