Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0000945

Physical Location & Seq

Genomic Coordinates Forward (+)

7051419 .. 7052220

Gene Structure 802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g07730.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGTCAGATGCTCGAGACAAGAAAGAGGTTACTTTATGCATTAAAGAGTTGAACTCACCAAGCTTCCATCCGTCGATGATATCTCTTTGGGTCACAGACTCTTTTGAGAGGAAGGACGCTGAAAGACATCGTTTGGCAAAGCTTCTAGTCAACCTTACAAAGACCCATCATGGAACTGTGAGTCAATCTCAGCTCATCAAAGGGTTTGAAACTGTTCTGTCGACCTTAGAGGATACCGTGATTGATACCCCGAGAGCACCAGGGTTTCGTGGCCTTGTCTTTGCCAAGGTCATTTTAGAGAATGTCGTTTCCTTGAATCAGATCGGTCAATTAATACACGAAGGTGGAGAGGAGCCAGGGCATCTTCTGGAAGTCGGGCTTGCAGGCAACGTTCTTGGGAACGTCTTGGAGATTATCAAGTCAGAGAAGGGAGATAACGGTTTGAACGAGATCCGTACGTCCTCCAATTTGCGGTTGGAAGCCTTTCGTCCCCCAGATCCTTTCAAATCAAGGATTCTAGAGAAATTTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 ko05416 map03013 map05416

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

178

Amino Acids

19.69

Weight (kDa)

6.31

Isoelectric Point (pI)

30.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60240 AT3G60240 AT3G60240
fragaria_vesca	FvH4_7g08960 FvH4_7g08960 FvH4_7g08960 FvH4_7g08960
malus_domestica	MD02G1222000.v1.1 MD07G1093700.v1.1 MD07G1093900.v1.1 MD07G1094000.v1.1 MD07G1094100.v1.1 MD07G1094200.v1.1 MD07G1094300.v1.1 MD07G1094400.v1.1
prunus_persica	Prupe.2G118700_v2.0.a1
pyrus_communis	pycom02g18790 pycom07g07670 pycom07g07680 pycom07g07690 pycom07g07730 pycom07g07740 pycom07g07750 pycom07g07760 pycom07g07770 pycom07g07780 pycom12419g00310 pycom15g30700
rosa_chinensis	RchiOBHm_Chr1g0344441 RchiOBHm_Chr1g0344451 RchiOBHm_Chr5g0038171
rosa_laevigata	RLG00000028873 RLG00000028874 RLG00000028899 RLG00000033837
rosa_multiflora	Rmu_sc0002670.1_g000001 Rmu_sc0010876.1_g000002 Rmu_sc0015248.1_g000009 Rmu_sc0015248.1_g000010
rosa_roxburghii	Rroxscaffold_1G00042800 Rroxscaffold_1G00042810 Rroxscaffold_4G00309730
rosa_rugosa	Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug05G0171200 Rorug05G0171300 Rorug05G0171300
rosa_samantha	Rh1AG190800 Rh1BG157200 Rh1BG157300 Rh1CG176100 Rh1DG188400 Rh1DG188600 Rh5AG258600 Rh5BG262200 Rh5CG294400 Rh5CG294500 Rh5CG294600 Rh5CG294700 Rh5DG271300 Rh6AG374400
rosa_wichuraiana	Rw1G015670 Rw5G024210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	221
AciI	CCGC	1 cut(s)	472
AclI	AACGTT	1 cut(s)	390
AclWI	GGATC	2 cut(s)	445, 491
AcsI	RAATTY	1 cut(s)	524
AfaI	GTAC	1 cut(s)	457
AfiI	CCNNNNNNNGG	1 cut(s)	471
AgsI	TTSAA	5 cut(s)	52, 209, 316, 445, 505
AjnI	CCWGG	2 cut(s)	259, 355
AleI	CACNNNNGTG	1 cut(s)	342
AluBI	AGCT	3 cut(s)	63, 142, 193
AluI	AGCT	3 cut(s)	63, 142, 193
Alw21I	GWGCWC	1 cut(s)	259
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	2 cut(s)	445, 491
Ama87I	CYCGRG	2 cut(s)	12, 250
AoxI	GGCC	1 cut(s)	271
ApoI	RAATTY	1 cut(s)	524
AseI	ATTAAT	1 cut(s)	332
Asp700I	GAANNNNTTC	2 cut(s)	213, 483
AsuHPI	GGTGA	1 cut(s)	48
AvaI	CYCGRG	2 cut(s)	12, 250
Bbv12I	GWGCWC	1 cut(s)	259
BccI	CCATC	2 cut(s)	75, 174
BciT130I	CCWGG	2 cut(s)	261, 357
BciVI	GTATCC	1 cut(s)	226
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	2 cut(s)	146, 518
BfuI	GTATCC	1 cut(s)	226
Bme1390I	CCNGG	2 cut(s)	261, 357
BmeT110I	CYCGRG	2 cut(s)	12, 250
BmiI	GGNNCC	1 cut(s)	354
BmrFI	CCNGG	2 cut(s)	261, 357
BmsI	GCATC	1 cut(s)	370
BplI	GAGNNNNNCTC	4 cut(s)	38, 70, 172, 204
BsaJI	CCNNGG	3 cut(s)	260, 285, 356
Bsc4I	CCNNNNNNNGG	1 cut(s)	471
BseBI	CCWGG	2 cut(s)	261, 357
BseDI	CCNNGG	3 cut(s)	260, 285, 356
BseGI	GGATG	1 cut(s)	67
BseLI	CCNNNNNNNGG	1 cut(s)	471
BseMII	CTCAG	1 cut(s)	203
BseRI	GAGGAG	1 cut(s)	365
BshFI	GGCC	1 cut(s)	273
BsiHKAI	GWGCWC	1 cut(s)	259
BsiHKCI	CYCGRG	2 cut(s)	12, 250
BsiWI	CGTACG	1 cut(s)	455
BslFI	GGGAC	1 cut(s)	474
BslI	CCNNNNNNNGG	1 cut(s)	471
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	474
BsnI	GGCC	1 cut(s)	273
BsoBI	CYCGRG	2 cut(s)	12, 250
Bsp1286I	GDGCHC	1 cut(s)	259
Bsp143I	GATC	3 cut(s)	321, 450, 496
BspACI	CCGC	1 cut(s)	472
BspANI	GGCC	1 cut(s)	273
BspCNI	CTCAG	1 cut(s)	202
BspLI	GGNNCC	1 cut(s)	354
BspPI	GGATC	2 cut(s)	445, 491
BssECI	CCNNGG	3 cut(s)	260, 285, 356
BssMI	GATC	3 cut(s)	321, 450, 496
BssT1I	CCWWGG	1 cut(s)	285
Bst2UI	CCWGG	2 cut(s)	261, 357
Bst4CI	ACNGT	4 cut(s)	178, 214, 238, 440
BstC8I	GCNNGC	2 cut(s)	381, 385
BstDEI	CTNAG	2 cut(s)	189, 226
BstF5I	GGATG	1 cut(s)	67
BstKTI	GATC	3 cut(s)	324, 453, 499
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	3 cut(s)	321, 450, 496
BstNI	CCWGG	2 cut(s)	261, 357
BstSCI	CCNGG	2 cut(s)	259, 355
BstX2I	RGATCY	2 cut(s)	450, 496
BstYI	RGATCY	2 cut(s)	450, 496
BsuI	GTATCC	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	273
BtsCI	GGATG	1 cut(s)	67
Cac8I	GCNNGC	2 cut(s)	381, 385
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	456
CviAII	CATG	1 cut(s)	170
CviJI	RGCY	7 cut(s)	63, 142, 193, 273, 355, 379, 482
CviKI_1	RGCY	7 cut(s)	63, 142, 193, 273, 355, 379, 482
CviQI	GTAC	1 cut(s)	456
DdeI	CTNAG	2 cut(s)	189, 226
DpnI	GATC	3 cut(s)	323, 452, 498
DpnII	GATC	3 cut(s)	321, 450, 496
Eco130I	CCWWGG	1 cut(s)	285
Eco32I	GATATC	1 cut(s)	81
Eco88I	CYCGRG	2 cut(s)	12, 250
EcoRII	CCWGG	2 cut(s)	259, 355
EcoRV	GATATC	1 cut(s)	81
EcoT14I	CCWWGG	1 cut(s)	285
EcoT22I	ATGCAT	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	285
FaeI	CATG	1 cut(s)	173
FaiI	YATR	2 cut(s)	37, 171
FalI	AAGNNNNNCTT	2 cut(s)	363, 395
FaqI	GGGAC	1 cut(s)	474
FatI	CATG	1 cut(s)	169
FblI	GTMKAC	1 cut(s)	221
FokI	GGATG	1 cut(s)	54
FspBI	CTAG	2 cut(s)	146, 518
HaeIII	GGCC	1 cut(s)	273
HgaI	GACGC	1 cut(s)	125
Hin1II	CATG	1 cut(s)	173
HincII	GTYRAC	2 cut(s)	151, 222
HindII	GTYRAC	2 cut(s)	151, 222
HindIII	AAGCTT	2 cut(s)	61, 140
HinfI	GANTC	4 cut(s)	98, 181, 316, 514
HphI	GGTGA	1 cut(s)	48
Hpy166II	GTNNAC	2 cut(s)	151, 222
Hpy188I	TCNGA	3 cut(s)	7, 321, 424
Hpy188III	TCNNGA	3 cut(s)	14, 368, 518
Hpy8I	GTNNAC	2 cut(s)	151, 222
Hpy99I	CGWCG	1 cut(s)	76
HpyAV	CCTTC	3 cut(s)	106, 335, 421
HpyCH4III	ACNGT	4 cut(s)	178, 214, 238, 440
HpyCH4IV	ACGT	3 cut(s)	390, 402, 458
HpyCH4V	TGCA	2 cut(s)	39, 383
HpyF3I	CTNAG	2 cut(s)	189, 226
HpySE526I	ACGT	3 cut(s)	390, 402, 458
Hsp92II	CATG	1 cut(s)	173
Kzo9I	GATC	3 cut(s)	321, 450, 496
LmnI	GCTCC	1 cut(s)	352
LpnPI	CCDG	7 cut(s)	246, 273, 342, 353, 369, 369, 507
LweI	GCATC	1 cut(s)	370
MaeI	CTAG	2 cut(s)	146, 518
MaeII	ACGT	3 cut(s)	390, 402, 458
MaeIII	GTNAC	2 cut(s)	28, 91
MalI	GATC	3 cut(s)	323, 452, 498
MboI	GATC	3 cut(s)	321, 450, 496
MboII	GAAGA	1 cut(s)	356
MflI	RGATCY	2 cut(s)	450, 496
MhlI	GDGCHC	1 cut(s)	259
MluCI	AATT	3 cut(s)	329, 466, 524
MlyI	GAGTC	2 cut(s)	92, 190
MmeI	TCCRAC	1 cut(s)	456
MnlI	CCTC	5 cut(s)	19, 102, 223, 343, 472
Mph1103I	ATGCAT	1 cut(s)	41
MroXI	GAANNNNTTC	2 cut(s)	213, 483
MseI	TTAA	2 cut(s)	42, 332
MslI	CAYNNNNRTG	1 cut(s)	342
MspR9I	CCNGG	2 cut(s)	261, 357
MvaI	CCWGG	2 cut(s)	261, 357
NdeII	GATC	3 cut(s)	321, 450, 496
NlaIII	CATG	1 cut(s)	173
NlaIV	GGNNCC	1 cut(s)	354
NmuCI	GTSAC	1 cut(s)	91
NsiI	ATGCAT	1 cut(s)	41
OliI	CACNNNNGTG	1 cut(s)	342
PaeR7I	CTCGAG	1 cut(s)	12
PcsI	WCGNNNNNNNCGW	1 cut(s)	444
PdmI	GAANNNNTTC	2 cut(s)	213, 483
PfeI	GAWTC	2 cut(s)	316, 514
Pfl23II	CGTACG	1 cut(s)	455
PleI	GAGTC	2 cut(s)	92, 189
PpsI	GAGTC	2 cut(s)	92, 189
PshBI	ATTAAT	1 cut(s)	332
Psp1406I	AACGTT	1 cut(s)	390
Psp6I	CCWGG	2 cut(s)	259, 355
PspGI	CCWGG	2 cut(s)	259, 355
PspLI	CGTACG	1 cut(s)	455
PspN4I	GGNNCC	1 cut(s)	354
PsuI	RGATCY	2 cut(s)	450, 496
RsaI	GTAC	1 cut(s)	457
RsaNI	GTAC	1 cut(s)	456
RseI	CAYNNNNRTG	1 cut(s)	342
SalI	GTCGAC	1 cut(s)	220
SaqAI	TTAA	2 cut(s)	42, 332
Sau3AI	GATC	3 cut(s)	321, 450, 496
SchI	GAGTC	2 cut(s)	92, 190
ScrFI	CCNGG	2 cut(s)	261, 357
SduI	GDGCHC	1 cut(s)	259
SfaNI	GCATC	1 cut(s)	370
Sfr274I	CTCGAG	1 cut(s)	12
SlaI	CTCGAG	1 cut(s)	12
SmiMI	CAYNNNNRTG	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
Sse9I	AATT	3 cut(s)	329, 466, 524
SsiI	CCGC	1 cut(s)	472
SspMI	CTAG	2 cut(s)	146, 518
StyD4I	CCNGG	2 cut(s)	259, 355
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	4 cut(s)	178, 214, 238, 440
TaiI	ACGT	3 cut(s)	393, 405, 461
TaqI	TCGA	3 cut(s)	13, 74, 221
TaqII	GACCGA	1 cut(s)	314
TasI	AATT	3 cut(s)	329, 466, 524
TfiI	GAWTC	2 cut(s)	316, 514
Tru1I	TTAA	2 cut(s)	42, 332
Tru9I	TTAA	2 cut(s)	42, 332
TseFI	GTSAC	1 cut(s)	91
Tsp45I	GTSAC	1 cut(s)	91
TspGWI	ACGGA	2 cut(s)	60, 443
VspI	ATTAAT	1 cut(s)	332
XapI	RAATTY	1 cut(s)	524
XbaI	TCTAGA	1 cut(s)	517
XcmI	CCANNNNNNNNNTGG	1 cut(s)	472
XhoI	CTCGAG	1 cut(s)	12
XmiI	GTMKAC	1 cut(s)	221
XmnI	GAANNNNTTC	2 cut(s)	213, 483
XspI	CTAG	2 cut(s)	146, 518
Zsp2I	ATGCAT	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.