Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0000945

Physical Location & Seq

Genomic Coordinates Forward (+)

7064195 .. 7065070

Gene Structure 876 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g07750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGATGATGATAGATGGAATATGGGAGGTGCTGCCAATTTCCGAACTGGCCAGGGACCAAAGTTTGGAGTTTTGAGGAATCCGCGTGCACTGACACCAGTTCAGCAGCATGTTAGAGGAATCCTGCCTGGGCCTGCTCACTCTGTTGGTCATCAGGAAGGGATGCAAAGAAATAATTCTGATGCTGACAGGTGGCAGAGAGCTGCGAATTTTCAACCTAAGGGCTTGATGCCTTCTCCTCATACTCCATTACAGGTGATGCACAAAGCTGACAGGAAGTATGAAGTGGGTAAAGTGAGTGATGAAGAGCAGGCCAAGCAAAGGCAGTTAAAGGCTATACTGAACAAGTTAACTCCTCAAAACTTTGAAAAACTATTCGAGCAAGTGAAAGCTGTTAATATGGATAATGCGATGACTCTAACTGGTGTCATTTCACAGATCTTTGACAAGGCTCTTATGGAGCCTACTTTCTGTGAGATGTATGCTAACTTCTGTTTTTATCTTGCCGGAGAGTTGCCTGATTTCAGTGAGGACAATGAAAAGATAACTTTTAAGATATTGCTTTATAACAAGTGCCAGGAGGAATTTGAGAGGGGAGGAAGACAGCAAGAGGAGACCAATAAGGCTGATGAGGAGGGTCAGGTGAAACAGTCTGAAGAAGAAAGAGAGGGGAAAAGAATCAAAGCGCGAAGACAAAGGTTGGGTAATGTTAGCTTGATTGGGGAGCTATACAAAAAGAGAATGTTGACCGAGAGAATAATGCACAAATGCATTGAAAAGTTGTTTGGTCAGCAACAGACTCCAGATGAGCAAGATATTGAAGCTTTGTGCATACTAATGAGCACAATTGGGGAGATGATTGATCGATCCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 ko05416 map03013 map05416

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

292

Amino Acids

33.44

Weight (kDa)

6.36

Isoelectric Point (pI)

58.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIF4G	PF02854	108 - 288	3.3e-37	MIF4G domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60240 AT3G60240 AT3G60240
fragaria_vesca	FvH4_7g08960 FvH4_7g08960 FvH4_7g08960 FvH4_7g08960
malus_domestica	MD02G1222000.v1.1 MD07G1093700.v1.1 MD07G1093900.v1.1 MD07G1094000.v1.1 MD07G1094100.v1.1 MD07G1094200.v1.1 MD07G1094300.v1.1 MD07G1094400.v1.1
prunus_persica	Prupe.2G118700_v2.0.a1
pyrus_communis	pycom02g18790 pycom07g07670 pycom07g07680 pycom07g07690 pycom07g07730 pycom07g07740 pycom07g07750 pycom07g07760 pycom07g07770 pycom07g07780 pycom12419g00310 pycom15g30700
rosa_chinensis	RchiOBHm_Chr1g0344441 RchiOBHm_Chr1g0344451 RchiOBHm_Chr5g0038171
rosa_laevigata	RLG00000028873 RLG00000028874 RLG00000028899 RLG00000033837
rosa_multiflora	Rmu_sc0002670.1_g000001 Rmu_sc0010876.1_g000002 Rmu_sc0015248.1_g000009 Rmu_sc0015248.1_g000010
rosa_roxburghii	Rroxscaffold_1G00042800 Rroxscaffold_1G00042810 Rroxscaffold_4G00309730
rosa_rugosa	Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug05G0171200 Rorug05G0171300 Rorug05G0171300
rosa_samantha	Rh1AG190800 Rh1BG157200 Rh1BG157300 Rh1CG176100 Rh1DG188400 Rh1DG188600 Rh5AG258600 Rh5BG262200 Rh5CG294400 Rh5CG294500 Rh5CG294600 Rh5CG294700 Rh5DG271300 Rh6AG374400
rosa_wichuraiana	Rw1G015670 Rw5G024210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	567
AccB7I	CCANNNNNTGG	1 cut(s)	65
AccII	CGCG	2 cut(s)	85, 688
AciI	CCGC	1 cut(s)	83
AclWI	GGATC	1 cut(s)	861
AcoI	YGGCCR	1 cut(s)	49
AcsI	RAATTY	2 cut(s)	208, 584
AcuI	CTGAAG	1 cut(s)	675
AfiI	CCNNNNNNNGG	2 cut(s)	65, 321
AgsI	TTSAA	4 cut(s)	215, 368, 776, 821
AjnI	CCWGG	3 cut(s)	51, 127, 576
AjuI	GAANNNNNNNTTGG	2 cut(s)	768, 800
AluBI	AGCT	6 cut(s)	203, 269, 392, 714, 727, 824
AluI	AGCT	6 cut(s)	203, 269, 392, 714, 727, 824
Alw21I	GWGCWC	2 cut(s)	91, 845
Alw26I	GTCTC	1 cut(s)	608
Alw44I	GTGCAC	1 cut(s)	87
AlwI	GGATC	1 cut(s)	861
AoxI	GGCC	3 cut(s)	49, 131, 312
ApaLI	GTGCAC	1 cut(s)	87
ApeKI	GCWGC	3 cut(s)	32, 106, 203
ApoI	RAATTY	2 cut(s)	208, 584
Asp700I	GAANNNNTTC	1 cut(s)	175
AspLEI	GCGC	1 cut(s)	688
AspS9I	GGNCC	2 cut(s)	56, 131
AsuHPI	GGTGA	2 cut(s)	268, 655
AvaII	GGWCC	1 cut(s)	56
AxyI	CCTNAGG	1 cut(s)	219
BaeGI	GKGCMC	1 cut(s)	91
BalI	TGGCCA	1 cut(s)	51
BarI	GAAGNNNNNNTAC	2 cut(s)	473, 505
BbsI	GAAGAC	2 cut(s)	607, 697
Bbv12I	GWGCWC	2 cut(s)	91, 845
BbvI	GCAGC	3 cut(s)	19, 118, 190
BccI	CCATC	1 cut(s)	9
BciT130I	CCWGG	3 cut(s)	53, 129, 578
BcoDI	GTCTC	1 cut(s)	608
BglII	AGATCT	1 cut(s)	438
BisI	GCNGC	3 cut(s)	33, 107, 204
BlsI	GCNGC	3 cut(s)	34, 108, 205
Bme1390I	CCNGG	3 cut(s)	53, 129, 578
Bme18I	GGWCC	1 cut(s)	56
BmgT120I	GGNCC	2 cut(s)	56, 131
BmiI	GGNNCC	2 cut(s)	57, 462
BmrFI	CCNGG	3 cut(s)	53, 129, 578
BmsI	GCATC	4 cut(s)	153, 172, 219, 249
BpiI	GAAGAC	2 cut(s)	607, 697
BpmI	CTGGAG	1 cut(s)	786
Bsa29I	ATCGAT	1 cut(s)	865
BsaI	GGTCTC	1 cut(s)	608
BsaJI	CCNNGG	2 cut(s)	52, 128
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 321
Bse1I	ACTGG	3 cut(s)	52, 98, 427
Bse21I	CCTNAGG	1 cut(s)	219
BseBI	CCWGG	3 cut(s)	53, 129, 578
BseCI	ATCGAT	1 cut(s)	865
BseDI	CCNNGG	2 cut(s)	52, 128
BseGI	GGATG	2 cut(s)	10, 168
BseLI	CCNNNNNNNGG	2 cut(s)	65, 321
BseNI	ACTGG	3 cut(s)	52, 98, 427
BseRI	GAGGAG	4 cut(s)	228, 345, 626, 647
BseSI	GKGCMC	1 cut(s)	91
BseXI	GCAGC	3 cut(s)	19, 118, 190
Bsh1236I	CGCG	2 cut(s)	85, 688
BshFI	GGCC	3 cut(s)	51, 133, 314
BshVI	ATCGAT	1 cut(s)	865
BsiHKAI	GWGCWC	2 cut(s)	91, 845
BsiSI	CCGG	1 cut(s)	507
BslFI	GGGAC	1 cut(s)	69
BslI	CCNNNNNNNGG	2 cut(s)	65, 321
BsmAI	GTCTC	1 cut(s)	608
BsmFI	GGGAC	1 cut(s)	69
BsnI	GGCC	3 cut(s)	51, 133, 314
Bso31I	GGTCTC	1 cut(s)	608
Bsp1286I	GDGCHC	2 cut(s)	91, 845
Bsp143I	GATC	3 cut(s)	438, 862, 866
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	3 cut(s)	51, 133, 314
BspDI	ATCGAT	1 cut(s)	865
BspFNI	CGCG	2 cut(s)	85, 688
BspLI	GGNNCC	2 cut(s)	57, 462
BspPI	GGATC	1 cut(s)	861
BspQI	GCTCTTC	1 cut(s)	300
BspTNI	GGTCTC	1 cut(s)	608
BsrI	ACTGG	3 cut(s)	52, 98, 427
BssECI	CCNNGG	2 cut(s)	52, 128
BssMI	GATC	3 cut(s)	438, 862, 866
Bst2UI	CCWGG	3 cut(s)	53, 129, 578
Bst4CI	ACNGT	1 cut(s)	651
Bst6I	CTCTTC	1 cut(s)	300
BstC8I	GCNNGC	3 cut(s)	87, 135, 312
BstDEI	CTNAG	1 cut(s)	219
BstF5I	GGATG	2 cut(s)	10, 168
BstFNI	CGCG	2 cut(s)	85, 688
BstHHI	GCGC	1 cut(s)	688
BstKTI	GATC	3 cut(s)	441, 865, 869
BstMAI	GTCTC	1 cut(s)	608
BstMBI	GATC	3 cut(s)	438, 862, 866
BstMWI	GCNNNNNNNGC	1 cut(s)	316
BstNI	CCWGG	3 cut(s)	53, 129, 578
BstNSI	RCATGY	1 cut(s)	113
BstSCI	CCNGG	3 cut(s)	51, 127, 576
BstSLI	GKGCMC	1 cut(s)	91
BstUI	CGCG	2 cut(s)	85, 688
BstV1I	GCAGC	3 cut(s)	19, 118, 190
BstV2I	GAAGAC	2 cut(s)	607, 697
BstX2I	RGATCY	1 cut(s)	438
BstYI	RGATCY	1 cut(s)	438
Bsu15I	ATCGAT	1 cut(s)	865
Bsu36I	CCTNAGG	1 cut(s)	219
BsuRI	GGCC	3 cut(s)	51, 133, 314
BsuTUI	ATCGAT	1 cut(s)	865
BtgZI	GCGATG	1 cut(s)	425
BtsCI	GGATG	2 cut(s)	10, 168
BtsIMutI	CAGTG	2 cut(s)	89, 532
Cac8I	GCNNGC	3 cut(s)	87, 135, 312
CfoI	GCGC	1 cut(s)	688
Cfr13I	GGNCC	2 cut(s)	56, 131
ClaI	ATCGAT	1 cut(s)	865
CviAII	CATG	1 cut(s)	110
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	3 cut(s)	440, 864, 868
DpnII	GATC	3 cut(s)	438, 862, 866
EaeI	YGGCCR	1 cut(s)	49
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
Eco31I	GGTCTC	1 cut(s)	608
Eco47I	GGWCC	1 cut(s)	56
Eco57I	CTGAAG	1 cut(s)	675
Eco81I	CCTNAGG	1 cut(s)	219
EcoRII	CCWGG	3 cut(s)	51, 127, 576
EcoT22I	ATGCAT	1 cut(s)	773
FaeI	CATG	1 cut(s)	113
FaqI	GGGAC	1 cut(s)	69
FatI	CATG	1 cut(s)	109
Fnu4HI	GCNGC	3 cut(s)	33, 107, 204
FokI	GGATG	2 cut(s)	17, 175
Fsp4HI	GCNGC	3 cut(s)	33, 107, 204
GlaI	GCGC	1 cut(s)	687
GluI	GCNGC	3 cut(s)	33, 107, 204
GsuI	CTGGAG	1 cut(s)	786
HaeIII	GGCC	3 cut(s)	51, 133, 314
HapII	CCGG	1 cut(s)	507
HhaI	GCGC	1 cut(s)	688
Hin1II	CATG	1 cut(s)	113
Hin6I	GCGC	1 cut(s)	686
HinP1I	GCGC	1 cut(s)	686
HincII	GTYRAC	2 cut(s)	351, 747
HindII	GTYRAC	2 cut(s)	351, 747
HindIII	AAGCTT	1 cut(s)	822
HinfI	GANTC	5 cut(s)	79, 120, 415, 678, 799
HpaI	GTTAAC	1 cut(s)	351
HpaII	CCGG	1 cut(s)	507
HphI	GGTGA	2 cut(s)	268, 655
Hpy166II	GTNNAC	3 cut(s)	89, 351, 747
Hpy188I	TCNGA	4 cut(s)	44, 181, 655, 871
Hpy188III	TCNNGA	2 cut(s)	155, 803
Hpy8I	GTNNAC	3 cut(s)	89, 351, 747
HpyAV	CCTTC	2 cut(s)	152, 243
HpyCH4III	ACNGT	1 cut(s)	651
HpyCH4V	TGCA	6 cut(s)	89, 166, 262, 763, 771, 831
HpyF10VI	GCNNNNNNNGC	1 cut(s)	316
HpyF3I	CTNAG	1 cut(s)	219
Hsp92II	CATG	1 cut(s)	113
HspAI	GCGC	1 cut(s)	686
KspAI	GTTAAC	1 cut(s)	351
Kzo9I	GATC	3 cut(s)	438, 862, 866
LguI	GCTCTTC	1 cut(s)	300
LmnI	GCTCC	2 cut(s)	460, 724
Lsp1109I	GCAGC	3 cut(s)	19, 118, 190
LweI	GCATC	4 cut(s)	153, 172, 219, 249
MalI	GATC	3 cut(s)	440, 864, 868
MboI	GATC	3 cut(s)	438, 862, 866
MboII	GAAGA	5 cut(s)	317, 612, 668, 671, 702
MfeI	CAATTG	1 cut(s)	846
MflI	RGATCY	1 cut(s)	438
MhlI	GDGCHC	2 cut(s)	91, 845
MlsI	TGGCCA	1 cut(s)	51
MluCI	AATT	5 cut(s)	37, 175, 208, 584, 846
MluNI	TGGCCA	1 cut(s)	51
MlyI	GAGTC	2 cut(s)	409, 793
Mox20I	TGGCCA	1 cut(s)	51
Mph1103I	ATGCAT	1 cut(s)	773
MroXI	GAANNNNTTC	1 cut(s)	175
MscI	TGGCCA	1 cut(s)	51
MseI	TTAA	5 cut(s)	329, 350, 396, 552, 874
MslI	CAYNNNNRTG	1 cut(s)	836
Msp20I	TGGCCA	1 cut(s)	51
MspI	CCGG	1 cut(s)	507
MspR9I	CCNGG	3 cut(s)	53, 129, 578
MunI	CAATTG	1 cut(s)	846
MvaI	CCWGG	3 cut(s)	53, 129, 578
MvnI	CGCG	2 cut(s)	85, 688
MwoI	GCNNNNNNNGC	1 cut(s)	316
NdeII	GATC	3 cut(s)	438, 862, 866
NlaIII	CATG	1 cut(s)	113
NlaIV	GGNNCC	2 cut(s)	57, 462
NsiI	ATGCAT	1 cut(s)	773
NspI	RCATGY	1 cut(s)	113
PciSI	GCTCTTC	1 cut(s)	300
PdmI	GAANNNNTTC	1 cut(s)	175
PfeI	GAWTC	3 cut(s)	79, 120, 678
PflMI	CCANNNNNTGG	1 cut(s)	65
PkrI	GCNGC	3 cut(s)	34, 108, 205
PleI	GAGTC	2 cut(s)	409, 793
PpsI	GAGTC	2 cut(s)	409, 793
PsiI	TTATAA	1 cut(s)	567
Psp6I	CCWGG	3 cut(s)	51, 127, 576
PspGI	CCWGG	3 cut(s)	51, 127, 576
PspN4I	GGNNCC	2 cut(s)	57, 462
PspPI	GGNCC	2 cut(s)	56, 131
PsuI	RGATCY	1 cut(s)	438
RseI	CAYNNNNRTG	1 cut(s)	836
SapI	GCTCTTC	1 cut(s)	300
SaqAI	TTAA	5 cut(s)	329, 350, 396, 552, 874
SatI	GCNGC	3 cut(s)	33, 107, 204
Sau3AI	GATC	3 cut(s)	438, 862, 866
Sau96I	GGNCC	2 cut(s)	56, 131
SchI	GAGTC	2 cut(s)	409, 793
ScrFI	CCNGG	3 cut(s)	53, 129, 578
SduI	GDGCHC	2 cut(s)	91, 845
SfaNI	GCATC	4 cut(s)	153, 172, 219, 249
SinI	GGWCC	1 cut(s)	56
SmiMI	CAYNNNNRTG	1 cut(s)	836
Sse9I	AATT	5 cut(s)	37, 175, 208, 584, 846
SsiI	CCGC	1 cut(s)	83
StyD4I	CCNGG	3 cut(s)	51, 127, 576
TaaI	ACNGT	1 cut(s)	651
TaqI	TCGA	2 cut(s)	378, 865
TaqII	GACCGA	1 cut(s)	764
TasI	AATT	5 cut(s)	37, 175, 208, 584, 846
TfiI	GAWTC	3 cut(s)	79, 120, 678
Tru1I	TTAA	5 cut(s)	329, 350, 396, 552, 874
Tru9I	TTAA	5 cut(s)	329, 350, 396, 552, 874
TscAI	CASTG	2 cut(s)	96, 532
TseI	GCWGC	3 cut(s)	32, 106, 203
TspDTI	ATGAA	3 cut(s)	297, 318, 552
TspRI	CASTG	2 cut(s)	96, 532
Van91I	CCANNNNNTGG	1 cut(s)	65
VneI	GTGCAC	1 cut(s)	87
VpaK11BI	GGWCC	1 cut(s)	56
XapI	RAATTY	2 cut(s)	208, 584
XceI	RCATGY	1 cut(s)	113
XmnI	GAANNNNTTC	1 cut(s)	175
Zsp2I	ATGCAT	1 cut(s)	773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.