Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000945

Physical Location & Seq

Genomic Coordinates Reverse (-)

61113396 .. 61113659

Gene Structure 264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00042800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGCATCAGCACACATTATCACTGCGGTGATTGGGTCTGGAATCCTGTCCGTGGATTGGGCCATAGCTCAGCTTGGATGGATTGCAGGTCCTATTGCAATGCTCTTGTTTTCTGGAGTGACTTACTACACTTCAACTCTGCTCTGTGCTTGCTATGGCTCCGGAGACACCGGACAAAGGAACTACACATACATGCAGGCTGTTCAATCTAGCCTCGGATCGGAGGAGCTAAGCTCAAGATTTGTGGAGTTGTTCAGTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015174 GO:0015318 GO:0015711 GO:0015802 GO:0015809 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039 GO:1990822

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

87

Amino Acids

9.25

Weight (kDa)

4.5

Isoelectric Point (pI)

37.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	1 - 74	4.5e-21	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60240 AT3G60240 AT3G60240
fragaria_vesca	FvH4_7g08960 FvH4_7g08960 FvH4_7g08960 FvH4_7g08960
malus_domestica	MD02G1222000.v1.1 MD07G1093700.v1.1 MD07G1093900.v1.1 MD07G1094000.v1.1 MD07G1094100.v1.1 MD07G1094200.v1.1 MD07G1094300.v1.1 MD07G1094400.v1.1
prunus_persica	Prupe.2G118700_v2.0.a1
pyrus_communis	pycom02g18790 pycom07g07670 pycom07g07680 pycom07g07690 pycom07g07730 pycom07g07740 pycom07g07750 pycom07g07760 pycom07g07770 pycom07g07780 pycom12419g00310 pycom15g30700
rosa_chinensis	RchiOBHm_Chr1g0344441 RchiOBHm_Chr1g0344451 RchiOBHm_Chr5g0038171
rosa_laevigata	RLG00000028873 RLG00000028874 RLG00000028899 RLG00000033837
rosa_multiflora	Rmu_sc0002670.1_g000001 Rmu_sc0010876.1_g000002 Rmu_sc0015248.1_g000009 Rmu_sc0015248.1_g000010
rosa_roxburghii	Rroxscaffold_1G00042800 Rroxscaffold_1G00042810 Rroxscaffold_4G00309730
rosa_rugosa	Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug05G0171200 Rorug05G0171300 Rorug05G0171300
rosa_samantha	Rh1AG190800 Rh1BG157200 Rh1BG157300 Rh1CG176100 Rh1DG188400 Rh1DG188600 Rh5AG258600 Rh5BG262200 Rh5CG294400 Rh5CG294500 Rh5CG294600 Rh5CG294700 Rh5DG271300 Rh6AG374400
rosa_wichuraiana	Rw1G015670 Rw5G024210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	77
AccIII	TCCGGA	1 cut(s)	161
AciI	CCGC	1 cut(s)	26
AclWI	GGATC	1 cut(s)	226
AfaI	GTAC	1 cut(s)	259
AfiI	CCNNNNNNNGG	4 cut(s)	52, 57, 177, 220
AgsI	TTSAA	2 cut(s)	135, 206
AleI	CACNNNNGTG	1 cut(s)	26
AluBI	AGCT	4 cut(s)	68, 73, 229, 234
AluI	AGCT	4 cut(s)	68, 73, 229, 234
Alw26I	GTCTC	1 cut(s)	159
AlwI	GGATC	1 cut(s)	226
Aor13HI	TCCGGA	1 cut(s)	161
AoxI	GGCC	1 cut(s)	60
AspS9I	GGNCC	2 cut(s)	60, 89
AsuHPI	GGTGA	1 cut(s)	40
AvaII	GGWCC	1 cut(s)	89
BccI	CCATC	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	159
BfaI	CTAG	1 cut(s)	210
BfuAI	ACCTGC	1 cut(s)	77
BlpI	GCTNAGC	2 cut(s)	69, 230
BmcAI	AGTACT	1 cut(s)	259
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	2 cut(s)	60, 89
BmiI	GGNNCC	1 cut(s)	160
BmsI	GCATC	1 cut(s)	14
BplI	GAGNNNNNCTC	2 cut(s)	218, 250
BpmI	CTGGAG	1 cut(s)	135
Bpu1102I	GCTNAGC	2 cut(s)	69, 230
BpuEI	CTTGAG	1 cut(s)	220
BsaJI	CCNNGG	2 cut(s)	51, 214
BsaWI	WCCGGW	2 cut(s)	161, 170
Bsc4I	CCNNNNNNNGG	4 cut(s)	52, 57, 177, 220
Bse3DI	GCAATG	1 cut(s)	105
BseAI	TCCGGA	1 cut(s)	161
BseDI	CCNNGG	2 cut(s)	51, 214
BseGI	GGATG	1 cut(s)	83
BseLI	CCNNNNNNNGG	4 cut(s)	52, 57, 177, 220
BseMI	GCAATG	1 cut(s)	105
BseMII	CTCAG	1 cut(s)	83
BseRI	GAGGAG	1 cut(s)	239
BshFI	GGCC	1 cut(s)	62
BsiSI	CCGG	2 cut(s)	162, 171
BslI	CCNNNNNNNGG	4 cut(s)	52, 57, 177, 220
BsmAI	GTCTC	1 cut(s)	159
BsnI	GGCC	1 cut(s)	62
Bsp13I	TCCGGA	1 cut(s)	161
Bsp143I	GATC	1 cut(s)	218
Bsp1720I	GCTNAGC	2 cut(s)	69, 230
BspACI	CCGC	1 cut(s)	26
BspANI	GGCC	1 cut(s)	62
BspCNI	CTCAG	1 cut(s)	82
BspEI	TCCGGA	1 cut(s)	161
BspLI	GGNNCC	1 cut(s)	160
BspMI	ACCTGC	1 cut(s)	77
BspPI	GGATC	1 cut(s)	226
BsrDI	GCAATG	1 cut(s)	105
BssECI	CCNNGG	2 cut(s)	51, 214
BssMI	GATC	1 cut(s)	218
BstC8I	GCNNGC	2 cut(s)	151, 198
BstDEI	CTNAG	2 cut(s)	69, 230
BstDSI	CCRYGG	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	83
BstKTI	GATC	1 cut(s)	221
BstMAI	GTCTC	1 cut(s)	159
BstMBI	GATC	1 cut(s)	218
BstNSI	RCATGY	1 cut(s)	196
BsuRI	GGCC	1 cut(s)	62
BtgI	CCRYGG	1 cut(s)	51
BtsCI	GGATG	1 cut(s)	83
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	1 cut(s)	21
BveI	ACCTGC	1 cut(s)	77
Cac8I	GCNNGC	2 cut(s)	151, 198
Cfr13I	GGNCC	2 cut(s)	60, 89
Csp6I	GTAC	1 cut(s)	258
CspCI	CAANNNNNGTGG	2 cut(s)	225, 260
CviAII	CATG	1 cut(s)	193
CviJI	RGCY	8 cut(s)	62, 68, 73, 159, 200, 213, 229, 234
CviKI_1	RGCY	8 cut(s)	62, 68, 73, 159, 200, 213, 229, 234
CviQI	GTAC	1 cut(s)	258
DdeI	CTNAG	2 cut(s)	69, 230
DpnI	GATC	1 cut(s)	220
DpnII	GATC	1 cut(s)	218
Eco47I	GGWCC	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	89
FaeI	CATG	1 cut(s)	196
FaiI	YATR	4 cut(s)	65, 156, 190, 194
FatI	CATG	1 cut(s)	192
FokI	GGATG	1 cut(s)	90
FspBI	CTAG	1 cut(s)	210
GsuI	CTGGAG	1 cut(s)	135
HaeIII	GGCC	1 cut(s)	62
HapII	CCGG	2 cut(s)	162, 171
Hin1II	CATG	1 cut(s)	196
HinfI	GANTC	1 cut(s)	42
HpaII	CCGG	2 cut(s)	162, 171
HphI	GGTGA	1 cut(s)	40
Hpy188I	TCNGA	2 cut(s)	218, 223
Hpy188III	TCNNGA	4 cut(s)	39, 114, 162, 237
HpyCH4V	TGCA	3 cut(s)	86, 98, 196
HpyF3I	CTNAG	2 cut(s)	69, 230
Hsp92II	CATG	1 cut(s)	196
Kpn2I	TCCGGA	1 cut(s)	161
Kzo9I	GATC	1 cut(s)	218
LmnI	GCTCC	2 cut(s)	164, 226
LpnPI	CCDG	7 cut(s)	24, 59, 72, 99, 175, 182, 184
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	1 cut(s)	210
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	1 cut(s)	220
MboI	GATC	1 cut(s)	218
MnlI	CCTC	2 cut(s)	217, 224
MroI	TCCGGA	1 cut(s)	161
MslI	CAYNNNNRTG	2 cut(s)	26, 191
MspI	CCGG	2 cut(s)	162, 171
NdeII	GATC	1 cut(s)	218
NlaIII	CATG	1 cut(s)	196
NlaIV	GGNNCC	1 cut(s)	160
NmuCI	GTSAC	1 cut(s)	118
NspI	RCATGY	1 cut(s)	196
OliI	CACNNNNGTG	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	42
PpuMI	RGGWCCY	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	89
PspN4I	GGNNCC	1 cut(s)	160
PspPI	GGNCC	2 cut(s)	60, 89
PspPPI	RGGWCCY	1 cut(s)	89
PsrI	GAACNNNNNNTAC	2 cut(s)	173, 205
RsaI	GTAC	1 cut(s)	259
RsaNI	GTAC	1 cut(s)	258
RseI	CAYNNNNRTG	2 cut(s)	26, 191
Sau3AI	GATC	1 cut(s)	218
Sau96I	GGNCC	2 cut(s)	60, 89
ScaI	AGTACT	1 cut(s)	259
SetI	ASST	5 cut(s)	70, 75, 91, 231, 236
SfaNI	GCATC	1 cut(s)	14
SinI	GGWCC	1 cut(s)	89
SmiMI	CAYNNNNRTG	2 cut(s)	26, 191
SmlI	CTYRAG	1 cut(s)	235
SmoI	CTYRAG	1 cut(s)	235
SsiI	CCGC	1 cut(s)	26
SspMI	CTAG	1 cut(s)	210
TatI	WGTACW	1 cut(s)	257
TfiI	GAWTC	1 cut(s)	42
TscAI	CASTG	1 cut(s)	28
TseFI	GTSAC	1 cut(s)	118
Tsp45I	GTSAC	1 cut(s)	118
TspGWI	ACGGA	1 cut(s)	40
TspRI	CASTG	1 cut(s)	28
VpaK11BI	GGWCC	1 cut(s)	89
XceI	RCATGY	1 cut(s)	196
XspI	CTAG	1 cut(s)	210
ZrmI	AGTACT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.