Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002670.1

Orthogroup ID

OG0000945

Physical Location & Seq

Genomic Coordinates Reverse (-)

3199 .. 4157

Gene Structure 959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002670.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atgttggggaatggggaggctttagcatattttcagtatgttgaaacaatgggactatatatggaaatttttaattcaatctacactggcccaggggatgcgtccaagggattttcctttcagtttgggttcacaagtcctggtttgatgaatgggatgcagattcctgctcgagctagctcagttcccccaactttggatgagcagaaacacgatcaggcacggcttgagtcctttagacctgcaccgtcattgccaaccgctgcatttcctaagcagctaccgaggaaagatcaaccttctgtcgaccaatctagtgctactaaggctcatctgcaacccaaggccaaaaaggatgtgcaagtctcacctacaacgactgctagccaaactcagaaaccttctggtcctccaatgcatgggatccttaggacgtcaatgccatttcatcagccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 ko05416 map03013 map05416

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

152

Amino Acids

16.54

Weight (kDa)

9.26

Isoelectric Point (pI)

51.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000945)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60240 AT3G60240 AT3G60240
fragaria_vesca	FvH4_7g08960 FvH4_7g08960 FvH4_7g08960 FvH4_7g08960
malus_domestica	MD02G1222000.v1.1 MD07G1093700.v1.1 MD07G1093900.v1.1 MD07G1094000.v1.1 MD07G1094100.v1.1 MD07G1094200.v1.1 MD07G1094300.v1.1 MD07G1094400.v1.1
prunus_persica	Prupe.2G118700_v2.0.a1
pyrus_communis	pycom02g18790 pycom07g07670 pycom07g07680 pycom07g07690 pycom07g07730 pycom07g07740 pycom07g07750 pycom07g07760 pycom07g07770 pycom07g07780 pycom12419g00310 pycom15g30700
rosa_chinensis	RchiOBHm_Chr1g0344441 RchiOBHm_Chr1g0344451 RchiOBHm_Chr5g0038171
rosa_laevigata	RLG00000028873 RLG00000028874 RLG00000028899 RLG00000033837
rosa_multiflora	Rmu_sc0002670.1_g000001 Rmu_sc0010876.1_g000002 Rmu_sc0015248.1_g000009 Rmu_sc0015248.1_g000010
rosa_roxburghii	Rroxscaffold_1G00042800 Rroxscaffold_1G00042810 Rroxscaffold_4G00309730
rosa_rugosa	Rorug01G0174300 Rorug01G0174300 Rorug01G0174300 Rorug05G0171200 Rorug05G0171300 Rorug05G0171300
rosa_samantha	Rh1AG190800 Rh1BG157200 Rh1BG157300 Rh1CG176100 Rh1DG188400 Rh1DG188600 Rh5AG258600 Rh5BG262200 Rh5CG294400 Rh5CG294500 Rh5CG294600 Rh5CG294700 Rh5DG271300 Rh6AG374400
rosa_wichuraiana	Rw1G015670 Rw5G024210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	437
Acc36I	ACCTGC	1 cut(s)	250
AccB7I	CCANNNNNTGG	1 cut(s)	419
AccI	GTMKAC	1 cut(s)	306
AciI	CCGC	1 cut(s)	261
AclWI	GGATC	2 cut(s)	418, 431
AcsI	RAATTY	1 cut(s)	66
AcyI	GRCGYC	1 cut(s)	434
AfiI	CCNNNNNNNGG	2 cut(s)	196, 419
AgsI	TTSAA	2 cut(s)	44, 78
AjnI	CCWGG	2 cut(s)	91, 139
AluBI	AGCT	3 cut(s)	176, 180, 280
AluI	AGCT	3 cut(s)	176, 180, 280
Alw26I	GTCTC	1 cut(s)	370
AlwI	GGATC	2 cut(s)	418, 431
Ama87I	CYCGRG	1 cut(s)	171
AoxI	GGCC	2 cut(s)	88, 345
ApeKI	GCWGC	2 cut(s)	263, 277
ApoI	RAATTY	1 cut(s)	66
AspS9I	GGNCC	2 cut(s)	89, 407
AsuHPI	GGTGA	1 cut(s)	360
AsuNHI	GCTAGC	2 cut(s)	176, 383
AvaI	CYCGRG	1 cut(s)	171
AvaII	GGWCC	1 cut(s)	407
AxyI	CCTNAGG	1 cut(s)	428
BamHI	GGATCC	1 cut(s)	423
BbvI	GCAGC	2 cut(s)	250, 289
BceAI	ACGGC	1 cut(s)	239
BciT130I	CCWGG	2 cut(s)	93, 141
BcoDI	GTCTC	1 cut(s)	370
BfaI	CTAG	3 cut(s)	177, 315, 384
BfuAI	ACCTGC	1 cut(s)	250
BisI	GCNGC	2 cut(s)	264, 278
BlsI	GCNGC	2 cut(s)	265, 279
Bme1390I	CCNGG	2 cut(s)	93, 141
Bme18I	GGWCC	1 cut(s)	407
BmeT110I	CYCGRG	1 cut(s)	171
BmgT120I	GGNCC	2 cut(s)	89, 407
BmiI	GGNNCC	1 cut(s)	425
BmrFI	CCNGG	2 cut(s)	93, 141
BmsI	GCATC	2 cut(s)	88, 147
BmtI	GCTAGC	2 cut(s)	180, 387
Bpu10I	CCTNAGC	1 cut(s)	273
BpuEI	CTTGAG	1 cut(s)	248
BsaHI	GRCGYC	1 cut(s)	434
BsaJI	CCNNGG	5 cut(s)	91, 92, 105, 284, 342
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 419
Bse1I	ACTGG	1 cut(s)	91
Bse21I	CCTNAGG	1 cut(s)	428
Bse3DI	GCAATG	1 cut(s)	251
BseBI	CCWGG	2 cut(s)	93, 141
BseDI	CCNNGG	5 cut(s)	91, 92, 105, 284, 342
BseGI	GGATG	4 cut(s)	103, 162, 205, 361
BseLI	CCNNNNNNNGG	2 cut(s)	196, 419
BseMI	GCAATG	1 cut(s)	251
BseMII	CTCAG	2 cut(s)	195, 407
BseNI	ACTGG	1 cut(s)	91
BseXI	GCAGC	2 cut(s)	250, 289
BsgI	GTGCAG	1 cut(s)	228
BshFI	GGCC	2 cut(s)	90, 347
BsiHKCI	CYCGRG	1 cut(s)	171
BslFI	GGGAC	1 cut(s)	66
BslI	CCNNNNNNNGG	2 cut(s)	196, 419
BsmAI	GTCTC	1 cut(s)	370
BsmFI	GGGAC	1 cut(s)	66
BsnI	GGCC	2 cut(s)	90, 347
BsoBI	CYCGRG	1 cut(s)	171
Bsp143I	GATC	3 cut(s)	214, 292, 423
BspACI	CCGC	1 cut(s)	261
BspANI	GGCC	2 cut(s)	90, 347
BspCNI	CTCAG	2 cut(s)	194, 406
BspLI	GGNNCC	1 cut(s)	425
BspMI	ACCTGC	1 cut(s)	250
BspOI	GCTAGC	2 cut(s)	180, 387
BspPI	GGATC	2 cut(s)	418, 431
BsrDI	GCAATG	1 cut(s)	251
BsrI	ACTGG	1 cut(s)	91
BssECI	CCNNGG	5 cut(s)	91, 92, 105, 284, 342
BssMI	GATC	3 cut(s)	214, 292, 423
BssNI	GRCGYC	1 cut(s)	434
BssT1I	CCWWGG	2 cut(s)	105, 342
Bst2UI	CCWGG	2 cut(s)	93, 141
Bst4CI	ACNGT	1 cut(s)	249
BstACI	GRCGYC	1 cut(s)	434
BstC8I	GCNNGC	2 cut(s)	178, 385
BstDEI	CTNAG	5 cut(s)	181, 273, 324, 393, 428
BstF5I	GGATG	4 cut(s)	103, 162, 205, 361
BstKTI	GATC	3 cut(s)	217, 295, 426
BstMAI	GTCTC	1 cut(s)	370
BstMBI	GATC	3 cut(s)	214, 292, 423
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstNI	CCWGG	2 cut(s)	93, 141
BstSCI	CCNGG	2 cut(s)	91, 139
BstV1I	GCAGC	2 cut(s)	250, 289
BstX2I	RGATCY	1 cut(s)	423
BstYI	RGATCY	1 cut(s)	423
Bsu36I	CCTNAGG	1 cut(s)	428
BsuRI	GGCC	2 cut(s)	90, 347
BtsCI	GGATG	4 cut(s)	103, 162, 205, 361
BtsIMutI	CAGTG	1 cut(s)	84
BveI	ACCTGC	1 cut(s)	250
Cac8I	GCNNGC	2 cut(s)	178, 385
Cfr13I	GGNCC	2 cut(s)	89, 407
CseI	GACGC	1 cut(s)	90
CviAII	CATG	1 cut(s)	419
DdeI	CTNAG	5 cut(s)	181, 273, 324, 393, 428
DpnI	GATC	3 cut(s)	216, 294, 425
DpnII	GATC	3 cut(s)	214, 292, 423
Eco130I	CCWWGG	2 cut(s)	105, 342
Eco47I	GGWCC	1 cut(s)	407
Eco81I	CCTNAGG	1 cut(s)	428
Eco88I	CYCGRG	1 cut(s)	171
EcoRII	CCWGG	2 cut(s)	91, 139
EcoT14I	CCWWGG	2 cut(s)	105, 342
EcoT22I	ATGCAT	1 cut(s)	420
ErhI	CCWWGG	2 cut(s)	105, 342
FaeI	CATG	1 cut(s)	422
FaiI	YATR	7 cut(s)	28, 39, 58, 60, 62, 420, 457
FaqI	GGGAC	1 cut(s)	66
FatI	CATG	1 cut(s)	418
FblI	GTMKAC	1 cut(s)	306
Fnu4HI	GCNGC	2 cut(s)	264, 278
FokI	GGATG	4 cut(s)	110, 169, 212, 368
Fsp4HI	GCNGC	2 cut(s)	264, 278
FspBI	CTAG	3 cut(s)	177, 315, 384
GluI	GCNGC	2 cut(s)	264, 278
HaeIII	GGCC	2 cut(s)	90, 347
HgaI	GACGC	1 cut(s)	90
Hin1I	GRCGYC	1 cut(s)	434
Hin1II	CATG	1 cut(s)	422
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	2 cut(s)	163, 230
HphI	GGTGA	1 cut(s)	360
Hpy166II	GTNNAC	2 cut(s)	132, 307
Hpy188I	TCNGA	1 cut(s)	396
Hpy8I	GTNNAC	2 cut(s)	132, 307
HpyAV	CCTTC	2 cut(s)	309, 411
HpyCH4III	ACNGT	1 cut(s)	249
HpyCH4IV	ACGT	1 cut(s)	434
HpyCH4V	TGCA	6 cut(s)	160, 245, 266, 337, 361, 418
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
HpyF3I	CTNAG	5 cut(s)	181, 273, 324, 393, 428
HpySE526I	ACGT	1 cut(s)	434
Hsp92I	GRCGYC	1 cut(s)	434
Hsp92II	CATG	1 cut(s)	422
Kzo9I	GATC	3 cut(s)	214, 292, 423
LpnPI	CCDG	9 cut(s)	72, 78, 105, 126, 153, 180, 203, 255, 390
Lsp1109I	GCAGC	2 cut(s)	250, 289
LweI	GCATC	2 cut(s)	88, 147
MaeI	CTAG	3 cut(s)	177, 315, 384
MaeII	ACGT	1 cut(s)	434
MalI	GATC	3 cut(s)	216, 294, 425
MboI	GATC	3 cut(s)	214, 292, 423
MflI	RGATCY	1 cut(s)	423
MluCI	AATT	2 cut(s)	66, 73
MlyI	GAGTC	1 cut(s)	239
MnlI	CCTC	3 cut(s)	10, 279, 420
Mph1103I	ATGCAT	1 cut(s)	420
MseI	TTAA	1 cut(s)	72
MspA1I	CMGCKG	1 cut(s)	263
MspR9I	CCNGG	2 cut(s)	93, 141
MvaI	CCWGG	2 cut(s)	93, 141
MwoI	GCNNNNNNNGC	1 cut(s)	326
NdeII	GATC	3 cut(s)	214, 292, 423
NheI	GCTAGC	2 cut(s)	176, 383
NlaIII	CATG	1 cut(s)	422
NlaIV	GGNNCC	1 cut(s)	425
NsiI	ATGCAT	1 cut(s)	420
PaeR7I	CTCGAG	1 cut(s)	171
PasI	CCCWGGG	1 cut(s)	92
PfeI	GAWTC	1 cut(s)	163
PflMI	CCANNNNNTGG	1 cut(s)	419
PkrI	GCNGC	2 cut(s)	265, 279
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
Psp6I	CCWGG	2 cut(s)	91, 139
PspGI	CCWGG	2 cut(s)	91, 139
PspN4I	GGNNCC	1 cut(s)	425
PspPI	GGNCC	2 cut(s)	89, 407
PspXI	VCTCGAGB	1 cut(s)	171
PsuI	RGATCY	1 cut(s)	423
SalI	GTCGAC	1 cut(s)	305
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	2 cut(s)	264, 278
Sau3AI	GATC	3 cut(s)	214, 292, 423
Sau96I	GGNCC	2 cut(s)	89, 407
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	2 cut(s)	93, 141
SetI	ASST	8 cut(s)	178, 182, 244, 282, 301, 373, 403, 437
SfaNI	GCATC	2 cut(s)	88, 147
Sfr274I	CTCGAG	1 cut(s)	171
SinI	GGWCC	1 cut(s)	407
SlaI	CTCGAG	1 cut(s)	171
SmlI	CTYRAG	2 cut(s)	171, 227
SmoI	CTYRAG	2 cut(s)	171, 227
Sse9I	AATT	2 cut(s)	66, 73
SsiI	CCGC	1 cut(s)	261
SspMI	CTAG	3 cut(s)	177, 315, 384
StyD4I	CCNGG	2 cut(s)	91, 139
StyI	CCWWGG	2 cut(s)	105, 342
TaaI	ACNGT	1 cut(s)	249
TaiI	ACGT	1 cut(s)	437
TaqI	TCGA	2 cut(s)	172, 306
TasI	AATT	2 cut(s)	66, 73
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	1 cut(s)	91
TseI	GCWGC	2 cut(s)	263, 277
TspDTI	ATGAA	2 cut(s)	164, 437
TspRI	CASTG	1 cut(s)	91
Van91I	CCANNNNNTGG	1 cut(s)	419
VpaK11BI	GGWCC	1 cut(s)	407
XapI	RAATTY	1 cut(s)	66
XhoI	CTCGAG	1 cut(s)	171
XmiI	GTMKAC	1 cut(s)	306
XspI	CTAG	3 cut(s)	177, 315, 384
ZraI	GACGTC	1 cut(s)	435
Zsp2I	ATGCAT	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.