Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001156

Physical Location & Seq

Genomic Coordinates Reverse (-)

13068679 .. 13069377

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1161800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCACATGGAATCCTTGAATCTCGTGAGCATGGGAATATGGAGTTGGAAGATGTTGGTGAGATATATTTCAAAGAGTTATGGGACAGATCTTTCTTTCAAAATGTTATTGATTTTGGTCTCTTCTATAGATTTGATATGCATGATCTCATCAAGGATCTTGTACAATCAGTCGCACAAGGTGAGAGTTTGATGGTAGACTCTGCAGACACCAATGGCGTCTCTGAAAATGTTAGACATCTAACAATTTTGAGAAGTGGCCAAAATGTTTCAACAACCTTGCAAAAGTTGAATAAAGTGCGGACTATAATTGTATACGAAAATATTGATGAATCCTTCCTCAGCACTTGCATTTCAAGATTCAAATATCTGCGGGTGCTTGATTTTTCCTATTTATCTTGGGAATTGGTGCCGAGTTCCATTCGTTCTTTGAAGCATTTGAGAATCCTGAACTTGGCTGGAAATGAAAGAATCACCGCACTACCCAATTCAATTTGTAAGCTGCAAAGCTTGCAAGCTCTGTTTCTCGGTGACTGCGTGAATTTTGAAGAGTTGCCTAGAGACGTGATCAAGTTGATCAGCCTCAGACGGCTTGATTTAACCACAAAACAATCAAGTTTTCCAGAGAATGGATTGGGATGCTTGAAATCACTTCGATCTCTTACTATTTATGTTGGACAAAAGGAGTATACAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

233

Amino Acids

26.67

Weight (kDa)

6.23

Isoelectric Point (pI)

47.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_DRP	PF23559	1 - 55	7.3e-13	Disease resistance protein Winged helix domain
LRR_14	PF23598	99 - 226	6.4e-20	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001156)

Species	Orthologous Gene IDs
malus_domestica	MD09G1161800.v1.1 MD09G1161900.v1.1 MD12G1180400.v1.1 MD14G1068500.v1.1 MD14G1068900.v1.1 MD14G1069100.v1.1 MD14G1070400.v1.1 MD14G1072100.v1.1 MD14G1072300.v1.1 MD14G1072500.v1.1
prunus_persica	Prupe.7G033700_v2.0.a1 Prupe.7G060200_v2.0.a1 Prupe.7G060300_v2.0.a1 Prupe.7G062200_v2.0.a1 Prupe.7G062300_v2.0.a1 Prupe.7G062500_v2.0.a1 Prupe.7G062600_v2.0.a1 Prupe.7G062700_v2.0.a1 Prupe.7G062800_v2.0.a1 Prupe.7G062900_v2.0.a1 Prupe.7G063000_v2.0.a1 Prupe.7G063800_v2.0.a1
pyrus_communis	pycom12g17000 pycom12g17010 pycom14g05670 pycom14g05690 pycom14g05730 pycom14g05810 pycom14g05820 pycom14g05860 pycom14g05900 pycom14g05920 pycom14g05950 pycom14g05960 pycom14g06200
rosa_chinensis	RchiOBHm_Chr3g0482391 RchiOBHm_Chr3g0482451 RchiOBHm_Chr5g0007861
rosa_multiflora	Rmu_sc0002969.1_g000005 Rmu_sc0013521.1_g000002 Rmu_sc0013521.1_g000003 Rmu_sc0021597.1_g000001
rosa_roxburghii	Rroxscaffold_6G00399360
rosa_rugosa	Rorug03G0193500 Rorug03G0195900 Rorug03G0196100
rosa_samantha	Rh1BG172200 Rh2CG271300 Rh3BG282500 Rh3BG282900 Rh3BG283100 Rh3CG279500 Rh3DG275300 Rh3DG275700
rosa_wichuraiana	Rw3G022230 Rw3G022260 Rw3G022280 Rw3G022310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	409
AccB7I	CCANNNNNTGG	1 cut(s)	629
AccI	GTMKAC	3 cut(s)	198, 315, 689
AciI	CCGC	3 cut(s)	301, 373, 477
AclWI	GGATC	1 cut(s)	165
AcoI	YGGCCR	1 cut(s)	259
AcsI	RAATTY	1 cut(s)	541
AcyI	GRCGYC	1 cut(s)	219
AdeI	CACNNNGTG	1 cut(s)	182
AfaI	GTAC	1 cut(s)	165
AfiI	CCNNNNNNNGG	2 cut(s)	454, 629
AjiI	CACGTC	1 cut(s)	565
AjuI	GAANNNNNNNTTGG	2 cut(s)	29, 61
AluBI	AGCT	3 cut(s)	502, 510, 518
AluI	AGCT	3 cut(s)	502, 510, 518
Alw26I	GTCTC	3 cut(s)	125, 226, 555
AlwI	GGATC	1 cut(s)	165
AoxI	GGCC	1 cut(s)	259
ApeKI	GCWGC	1 cut(s)	502
ApoI	RAATTY	1 cut(s)	541
AsuHPI	GGTGA	4 cut(s)	71, 194, 466, 542
BalI	TGGCCA	1 cut(s)	261
BanI	GGYRCC	1 cut(s)	409
BauI	CACGAG	1 cut(s)	24
BbvCI	CCTCAGC	1 cut(s)	341
BbvI	GCAGC	1 cut(s)	489
BccI	CCATC	1 cut(s)	187
BceAI	ACGGC	1 cut(s)	605
BclI	TGATCA	2 cut(s)	567, 576
BcoDI	GTCTC	3 cut(s)	125, 226, 555
BfaI	CTAG	1 cut(s)	558
BfmI	CTRYAG	2 cut(s)	127, 204
BglII	AGATCT	1 cut(s)	89
BisI	GCNGC	1 cut(s)	503
BlsI	GCNGC	1 cut(s)	504
BmgBI	CACGTC	1 cut(s)	565
BmiI	GGNNCC	1 cut(s)	411
BmsI	GCATC	1 cut(s)	629
Bpu10I	CCTNAGC	1 cut(s)	341
BsaHI	GRCGYC	1 cut(s)	219
BsaI	GGTCTC	1 cut(s)	125
Bsc4I	CCNNNNNNNGG	2 cut(s)	454, 629
BseGI	GGATG	1 cut(s)	644
BseLI	CCNNNNNNNGG	2 cut(s)	454, 629
BseMII	CTCAG	2 cut(s)	355, 598
BseXI	GCAGC	1 cut(s)	489
BshFI	GGCC	1 cut(s)	261
BshNI	GGYRCC	1 cut(s)	409
BslFI	GGGAC	1 cut(s)	98
BslI	CCNNNNNNNGG	2 cut(s)	454, 629
BsmAI	GTCTC	3 cut(s)	125, 226, 555
BsmBI	CGTCTC	2 cut(s)	226, 555
BsmFI	GGGAC	1 cut(s)	98
BsnI	GGCC	1 cut(s)	261
Bso31I	GGTCTC	1 cut(s)	125
Bsp1407I	TGTACA	1 cut(s)	163
Bsp143I	GATC	6 cut(s)	89, 145, 157, 567, 576, 656
BspACI	CCGC	3 cut(s)	301, 373, 477
BspANI	GGCC	1 cut(s)	261
BspCNI	CTCAG	2 cut(s)	354, 597
BspLI	GGNNCC	1 cut(s)	411
BspMAI	CTGCAG	1 cut(s)	208
BspPI	GGATC	1 cut(s)	165
BspT107I	GGYRCC	1 cut(s)	409
BspTNI	GGTCTC	1 cut(s)	125
BsrGI	TGTACA	1 cut(s)	163
BssMI	GATC	6 cut(s)	89, 145, 157, 567, 576, 656
BssNAI	GTATAC	2 cut(s)	316, 690
BssNI	GRCGYC	1 cut(s)	219
BssSI	CACGAG	1 cut(s)	24
Bst1107I	GTATAC	2 cut(s)	316, 690
Bst2BI	CACGAG	1 cut(s)	24
Bst6I	CTCTTC	2 cut(s)	128, 543
BstACI	GRCGYC	1 cut(s)	219
BstAPI	GCANNNNNTGC	1 cut(s)	511
BstAUI	TGTACA	1 cut(s)	163
BstC8I	GCNNGC	2 cut(s)	512, 516
BstDEI	CTNAG	2 cut(s)	341, 584
BstF5I	GGATG	1 cut(s)	644
BstKTI	GATC	6 cut(s)	92, 148, 160, 570, 579, 659
BstMAI	GTCTC	3 cut(s)	125, 226, 555
BstMBI	GATC	6 cut(s)	89, 145, 157, 567, 576, 656
BstMWI	GCNNNNNNNGC	1 cut(s)	511
BstSFI	CTRYAG	2 cut(s)	127, 204
BstV1I	GCAGC	1 cut(s)	489
BstX2I	RGATCY	2 cut(s)	89, 157
BstYI	RGATCY	2 cut(s)	89, 157
BstZ17I	GTATAC	2 cut(s)	316, 690
BsuRI	GGCC	1 cut(s)	261
BtrI	CACGTC	1 cut(s)	565
BtsCI	GGATG	1 cut(s)	644
Cac8I	GCNNGC	2 cut(s)	512, 516
CseI	GACGC	1 cut(s)	208
Csp6I	GTAC	1 cut(s)	164
CviAII	CATG	3 cut(s)	8, 32, 143
CviJI	RGCY	7 cut(s)	261, 458, 502, 510, 518, 582, 592
CviKI_1	RGCY	7 cut(s)	261, 458, 502, 510, 518, 582, 592
CviQI	GTAC	1 cut(s)	164
DdeI	CTNAG	2 cut(s)	341, 584
DpnI	GATC	6 cut(s)	91, 147, 159, 569, 578, 658
DpnII	GATC	6 cut(s)	89, 145, 157, 567, 576, 656
DraIII	CACNNNGTG	1 cut(s)	182
EaeI	YGGCCR	1 cut(s)	259
Eam1104I	CTCTTC	2 cut(s)	128, 543
EarI	CTCTTC	2 cut(s)	128, 543
Eco31I	GGTCTC	1 cut(s)	125
EcoT22I	ATGCAT	1 cut(s)	144
Esp3I	CGTCTC	2 cut(s)	226, 555
FaeI	CATG	3 cut(s)	11, 35, 146
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	3 cut(s)	7, 31, 142
FauI	CCCGC	1 cut(s)	366
FbaI	TGATCA	2 cut(s)	567, 576
FblI	GTMKAC	3 cut(s)	198, 315, 689
Fnu4HI	GCNGC	1 cut(s)	503
FokI	GGATG	1 cut(s)	651
Fsp4HI	GCNGC	1 cut(s)	503
FspBI	CTAG	1 cut(s)	558
GluI	GCNGC	1 cut(s)	503
HaeIII	GGCC	1 cut(s)	261
HgaI	GACGC	1 cut(s)	208
Hin1I	GRCGYC	1 cut(s)	219
Hin1II	CATG	3 cut(s)	11, 35, 146
HindIII	AAGCTT	1 cut(s)	508
HinfI	GANTC	7 cut(s)	12, 20, 200, 332, 360, 444, 471
HphI	GGTGA	4 cut(s)	71, 194, 466, 542
Hpy166II	GTNNAC	3 cut(s)	199, 316, 690
Hpy188I	TCNGA	2 cut(s)	226, 587
Hpy188III	TCNNGA	4 cut(s)	26, 357, 448, 623
Hpy8I	GTNNAC	3 cut(s)	199, 316, 690
HpyAV	CCTTC	1 cut(s)	346
HpyCH4IV	ACGT	1 cut(s)	564
HpyCH4V	TGCA	6 cut(s)	142, 206, 283, 351, 505, 514
HpyF10VI	GCNNNNNNNGC	1 cut(s)	511
HpyF3I	CTNAG	2 cut(s)	341, 584
HpySE526I	ACGT	1 cut(s)	564
Hsp92I	GRCGYC	1 cut(s)	219
Hsp92II	CATG	3 cut(s)	11, 35, 146
Ksp22I	TGATCA	2 cut(s)	567, 576
Kzo9I	GATC	6 cut(s)	89, 145, 157, 567, 576, 656
LpnPI	CCDG	3 cut(s)	444, 461, 636
Lsp1109I	GCAGC	1 cut(s)	489
LweI	GCATC	1 cut(s)	629
MaeI	CTAG	1 cut(s)	558
MaeII	ACGT	1 cut(s)	564
MaeIII	GTNAC	1 cut(s)	530
MalI	GATC	6 cut(s)	91, 147, 159, 569, 578, 658
MboI	GATC	6 cut(s)	89, 145, 157, 567, 576, 656
MboII	GAAGA	3 cut(s)	62, 115, 560
MflI	RGATCY	2 cut(s)	89, 157
MlsI	TGGCCA	1 cut(s)	261
MluCI	AATT	6 cut(s)	246, 309, 404, 487, 492, 541
MluNI	TGGCCA	1 cut(s)	261
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	2 cut(s)	27, 655
MnlI	CCTC	2 cut(s)	350, 593
Mox20I	TGGCCA	1 cut(s)	261
Mph1103I	ATGCAT	1 cut(s)	144
MscI	TGGCCA	1 cut(s)	261
MseI	TTAA	1 cut(s)	599
Msp20I	TGGCCA	1 cut(s)	261
MwoI	GCNNNNNNNGC	1 cut(s)	511
NdeII	GATC	6 cut(s)	89, 145, 157, 567, 576, 656
NlaIII	CATG	3 cut(s)	11, 35, 146
NlaIV	GGNNCC	1 cut(s)	411
NmeAIII	GCCGAG	1 cut(s)	438
NmuCI	GTSAC	1 cut(s)	530
NsiI	ATGCAT	1 cut(s)	144
PcsI	WCGNNNNNNNCGW	1 cut(s)	534
PfeI	GAWTC	6 cut(s)	12, 20, 332, 360, 444, 471
PflMI	CCANNNNNTGG	1 cut(s)	629
PkrI	GCNGC	1 cut(s)	504
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
PspN4I	GGNNCC	1 cut(s)	411
PstI	CTGCAG	1 cut(s)	208
PsuI	RGATCY	2 cut(s)	89, 157
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
SaqAI	TTAA	1 cut(s)	599
SatI	GCNGC	1 cut(s)	503
Sau3AI	GATC	6 cut(s)	89, 145, 157, 567, 576, 656
SchI	GAGTC	1 cut(s)	194
SetI	ASST	6 cut(s)	184, 281, 504, 512, 520, 567
SfaNI	GCATC	1 cut(s)	629
SfcI	CTRYAG	2 cut(s)	127, 204
Sse9I	AATT	6 cut(s)	246, 309, 404, 487, 492, 541
SsiI	CCGC	3 cut(s)	301, 373, 477
SspI	AATATT	1 cut(s)	325
SspMI	CTAG	1 cut(s)	558
TaiI	ACGT	1 cut(s)	567
TaqI	TCGA	1 cut(s)	655
TasI	AATT	6 cut(s)	246, 309, 404, 487, 492, 541
TatI	WGTACW	1 cut(s)	163
TfiI	GAWTC	6 cut(s)	12, 20, 332, 360, 444, 471
Tru1I	TTAA	1 cut(s)	599
Tru9I	TTAA	1 cut(s)	599
TseFI	GTSAC	1 cut(s)	530
TseI	GCWGC	1 cut(s)	502
Tsp45I	GTSAC	1 cut(s)	530
TspDTI	ATGAA	2 cut(s)	345, 480
Van91I	CCANNNNNTGG	1 cut(s)	629
XapI	RAATTY	1 cut(s)	541
XmiI	GTMKAC	3 cut(s)	198, 315, 689
XspI	CTAG	1 cut(s)	558
Zsp2I	ATGCAT	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.