Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001156

Physical Location & Seq

Genomic Coordinates Forward (+)

10117369 .. 10118758

Gene Structure 1390 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G062300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGTCCATCATCAAAGATGTTTTCTTGGATGCCGAACAAAAGCAAGAACATAACCAGCAGATACGCAGTTGCTTAAAGATATGGGAATTGGAACAAGAAGATGATGGTCGCATTTTACCTGCTTTGAGATTGAGTTATACCCGATTGCCTCCTCATTTGAGACAATGTCTTGCTTCTTGTTCCTATCTTCAAAAGGATTGGAATGGATATACTAGTTATGCATTGATAAGATACTGGATGGCACATGGAATCCTTGATCAGTTTCGTGTTCATGGGAACATGGAGTTGGAAGACATCGGAGAGCTGTATTTTAAAGATTTATGGGCGAGATCCTTCTTTCAAAAAGTTATTGATGATCATACATGCTACTTCTTTGATATGCATGGTCTTATCCATGATCTTGTACAATCAGTTGCACAAGGTGAGTGTTTTATAGTGAAGTCTGCAAACACCAAAGACATATCTGAAAATGTTAGACATTTGACATTTTTGGAAGCTGGCCAAAATGTTTCAACAACCTTGCAAAAGTTGAACAAAGTGCGGACTATAGCAGCAGAACGAATAGACATTGATGAATCCTTCCTTCACACTTGCTTTTCAAGATTCAAGTATTTGCGAGTGCTTAAGTTATTGGAAGTATCACTACAAGTGTTGCCAAGTTCCATTGGTTCGCTGAAACATTTGAAATATCTGGACTTGAGTTTAAATGAAGCAATGACGAAAGTCCCCAATTCAATTTGCAGATTGCAGAGCTTGCAAACTCTAAATTTTGGTTATTGTGAGAATCTCCAAGAGTTACCGAGAGATATAAGCAAATTGATAAGCCTCACATCACTTTTCTTAACCACAAAACAAACAAGTTTTACAGAGAATGGGGTGGGATGCTTGAAATCACTTCGATTTCTTAGTATTACCGAGTGTAGTAATTTAACCTTTTTGTCGCGTGAAACGAGCTATCTTGCTGCATTACGAACTCTATGGATAGTAGAATGCAAACTGCTGGATTTGGTGGACGTAAACTATCAAGGAACTCCCCGGAGGCTCCAAAAATTGATTATTAAAGATGTACCACGGATGGTGGCATTGCCTGAATGGTTTCAAGGAGCGGCTAACACCCTTCAACTCTTGGTTATTGCCAGGTGTGAGAATTTGGAGGCATTACCTGAGTGGTTGAGAAGTTTCACATCACTCAAAAAGTTGGTCCTTGATTCATATCCGAAATTGTCATCTCTACCAGAGAGGATGTGTTCTCTTACCTCCTTAAAAGAACTTGTGATTGATGATTGTCCTGAATTGGAGAGGAGATGCCAACGCGACATTGGAAAAGATTGGTCCAAAATTTCTCATGAGCCATATGTTTCCTTTCACTTGTTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

460

Amino Acids

53.18

Weight (kDa)

6.65

Isoelectric Point (pI)

43.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001156)

Species	Orthologous Gene IDs
malus_domestica	MD09G1161800.v1.1 MD09G1161900.v1.1 MD12G1180400.v1.1 MD14G1068500.v1.1 MD14G1068900.v1.1 MD14G1069100.v1.1 MD14G1070400.v1.1 MD14G1072100.v1.1 MD14G1072300.v1.1 MD14G1072500.v1.1
prunus_persica	Prupe.7G033700_v2.0.a1 Prupe.7G060200_v2.0.a1 Prupe.7G060300_v2.0.a1 Prupe.7G062200_v2.0.a1 Prupe.7G062300_v2.0.a1 Prupe.7G062500_v2.0.a1 Prupe.7G062600_v2.0.a1 Prupe.7G062700_v2.0.a1 Prupe.7G062800_v2.0.a1 Prupe.7G062900_v2.0.a1 Prupe.7G063000_v2.0.a1 Prupe.7G063800_v2.0.a1
pyrus_communis	pycom12g17000 pycom12g17010 pycom14g05670 pycom14g05690 pycom14g05730 pycom14g05810 pycom14g05820 pycom14g05860 pycom14g05900 pycom14g05920 pycom14g05950 pycom14g05960 pycom14g06200
rosa_chinensis	RchiOBHm_Chr3g0482391 RchiOBHm_Chr3g0482451 RchiOBHm_Chr5g0007861
rosa_multiflora	Rmu_sc0002969.1_g000005 Rmu_sc0013521.1_g000002 Rmu_sc0013521.1_g000003 Rmu_sc0021597.1_g000001
rosa_roxburghii	Rroxscaffold_6G00399360
rosa_rugosa	Rorug03G0193500 Rorug03G0195900 Rorug03G0196100
rosa_samantha	Rh1BG172200 Rh2CG271300 Rh3BG282500 Rh3BG282900 Rh3BG283100 Rh3CG279500 Rh3DG275300 Rh3DG275700
rosa_wichuraiana	Rw3G022230 Rw3G022260 Rw3G022280 Rw3G022310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	127
AccBSI	CCGCTC	1 cut(s)	1106
AccII	CGCG	2 cut(s)	943, 1314
AciI	CCGC	2 cut(s)	541, 1106
AclWI	GGATC	1 cut(s)	324
AcoI	YGGCCR	1 cut(s)	499
AcsI	RAATTY	3 cut(s)	766, 1147, 1338
AdeI	CACNNNGTG	1 cut(s)	422
AfaI	GTAC	2 cut(s)	405, 1068
AflII	CTTAAG	1 cut(s)	623
AhlI	ACTAGT	1 cut(s)	212
AjnI	CCWGG	1 cut(s)	1136
AjuI	GAANNNNNNNTTGG	2 cut(s)	269, 301
AluBI	AGCT	4 cut(s)	304, 497, 753, 954
AluI	AGCT	4 cut(s)	304, 497, 753, 954
Alw26I	GTCTC	1 cut(s)	154
AlwI	GGATC	1 cut(s)	324
AoxI	GGCC	1 cut(s)	499
ApeKI	GCWGC	2 cut(s)	551, 962
ApoI	RAATTY	3 cut(s)	766, 1147, 1338
ArsI	GACNNNNNNTTYG	2 cut(s)	1185, 1217
Asp700I	GAANNNNTTC	1 cut(s)	1095
AspS9I	GGNCC	2 cut(s)	1201, 1332
AsuC2I	CCSGG	1 cut(s)	1036
AsuHPI	GGTGA	1 cut(s)	434
AvaII	GGWCC	2 cut(s)	1201, 1332
BalI	TGGCCA	1 cut(s)	501
BarI	GAAGNNNNNNTAC	2 cut(s)	627, 659
BbsI	GAAGAC	1 cut(s)	297
BbvI	GCAGC	2 cut(s)	563, 949
BccI	CCATC	4 cut(s)	14, 98, 232, 1069
BciT130I	CCWGG	1 cut(s)	1138
BclI	TGATCA	2 cut(s)	256, 355
BcnI	CCSGG	1 cut(s)	1036
BcoDI	GTCTC	1 cut(s)	154
BcuI	ACTAGT	1 cut(s)	212
BfaI	CTAG	1 cut(s)	213
BfmI	CTRYAG	1 cut(s)	546
BfrI	CTTAAG	1 cut(s)	623
BfuAI	ACCTGC	1 cut(s)	127
BisI	GCNGC	3 cut(s)	552, 963, 1107
BlsI	GCNGC	3 cut(s)	553, 964, 1108
Bme1390I	CCNGG	2 cut(s)	1036, 1138
Bme18I	GGWCC	2 cut(s)	1201, 1332
BmgT120I	GGNCC	2 cut(s)	1201, 1332
BmiI	GGNNCC	1 cut(s)	1043
BmrFI	CCNGG	2 cut(s)	1036, 1138
BmsI	GCATC	3 cut(s)	19, 872, 1295
BoxI	GACNNNNGTC	1 cut(s)	722
BpiI	GAAGAC	1 cut(s)	297
BpuEI	CTTGAG	1 cut(s)	718
BpuMI	CCSGG	1 cut(s)	1036
BsaBI	GATNNNNATC	1 cut(s)	1212
BsaJI	CCNNGG	2 cut(s)	1034, 1070
Bse1I	ACTGG	1 cut(s)	239
Bse3DI	GCAATG	2 cut(s)	720, 1082
Bse8I	GATNNNNATC	1 cut(s)	1212
BseBI	CCWGG	1 cut(s)	1138
BseDI	CCNNGG	2 cut(s)	1034, 1070
BseGI	GGATG	5 cut(s)	34, 243, 887, 1080, 1248
BseJI	GATNNNNATC	1 cut(s)	1212
BseMI	GCAATG	2 cut(s)	720, 1082
BseMII	CTCAG	1 cut(s)	1155
BseNI	ACTGG	1 cut(s)	239
BseRI	GAGGAG	2 cut(s)	141, 1315
BseXI	GCAGC	2 cut(s)	563, 949
Bsh1236I	CGCG	2 cut(s)	943, 1314
BshFI	GGCC	1 cut(s)	501
BsiSI	CCGG	1 cut(s)	1036
BslFI	GGGAC	1 cut(s)	710
BsmAI	GTCTC	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	710
BsmI	GAATGC	1 cut(s)	995
BsnI	GGCC	1 cut(s)	501
Bsp1407I	TGTACA	1 cut(s)	403
Bsp143I	GATC	4 cut(s)	256, 329, 355, 397
BspACI	CCGC	2 cut(s)	541, 1106
BspANI	GGCC	1 cut(s)	501
BspCNI	CTCAG	1 cut(s)	1156
BspFNI	CGCG	2 cut(s)	943, 1314
BspHI	TCATGA	1 cut(s)	1345
BspLI	GGNNCC	1 cut(s)	1043
BspMI	ACCTGC	1 cut(s)	127
BspPI	GGATC	1 cut(s)	324
BspTI	CTTAAG	1 cut(s)	623
BsrBI	CCGCTC	1 cut(s)	1106
BsrDI	GCAATG	2 cut(s)	720, 1082
BsrGI	TGTACA	1 cut(s)	403
BsrI	ACTGG	1 cut(s)	239
BssECI	CCNNGG	2 cut(s)	1034, 1070
BssMI	GATC	4 cut(s)	256, 329, 355, 397
Bst2UI	CCWGG	1 cut(s)	1138
BstAFI	CTTAAG	1 cut(s)	623
BstAPI	GCANNNNNTGC	1 cut(s)	754
BstAUI	TGTACA	1 cut(s)	403
BstC8I	GCNNGC	2 cut(s)	499, 755
BstDEI	CTNAG	2 cut(s)	905, 1164
BstDSI	CCRYGG	1 cut(s)	1070
BstF5I	GGATG	5 cut(s)	34, 243, 887, 1080, 1248
BstFNI	CGCG	2 cut(s)	943, 1314
BstKTI	GATC	4 cut(s)	259, 332, 358, 400
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	4 cut(s)	256, 329, 355, 397
BstMWI	GCNNNNNNNGC	1 cut(s)	754
BstNI	CCWGG	1 cut(s)	1138
BstNSI	RCATGY	1 cut(s)	366
BstPAI	GACNNNNGTC	1 cut(s)	722
BstSCI	CCNGG	2 cut(s)	1034, 1136
BstSFI	CTRYAG	1 cut(s)	546
BstUI	CGCG	2 cut(s)	943, 1314
BstV1I	GCAGC	2 cut(s)	563, 949
BstV2I	GAAGAC	1 cut(s)	297
BstX2I	RGATCY	1 cut(s)	329
BstYI	RGATCY	1 cut(s)	329
BsuRI	GGCC	1 cut(s)	501
BtgI	CCRYGG	1 cut(s)	1070
BtsCI	GGATG	5 cut(s)	34, 243, 887, 1080, 1248
BveI	ACCTGC	1 cut(s)	127
Cac8I	GCNNGC	2 cut(s)	499, 755
CciI	TCATGA	1 cut(s)	1345
Cfr13I	GGNCC	2 cut(s)	1201, 1332
Csp6I	GTAC	2 cut(s)	404, 1067
CviAII	CATG	7 cut(s)	245, 272, 280, 363, 383, 395, 1346
CviJI	RGCY	9 cut(s)	304, 497, 501, 753, 825, 954, 1042, 1109, 1351
CviKI_1	RGCY	9 cut(s)	304, 497, 501, 753, 825, 954, 1042, 1109, 1351
CviQI	GTAC	2 cut(s)	404, 1067
DdeI	CTNAG	2 cut(s)	905, 1164
DpnI	GATC	4 cut(s)	258, 331, 357, 399
DpnII	GATC	4 cut(s)	256, 329, 355, 397
DraI	TTTAAA	2 cut(s)	313, 705
DraIII	CACNNNGTG	1 cut(s)	422
EaeI	YGGCCR	1 cut(s)	499
Eco47I	GGWCC	2 cut(s)	1201, 1332
EcoRII	CCWGG	1 cut(s)	1136
EcoT22I	ATGCAT	2 cut(s)	223, 384
FaeI	CATG	7 cut(s)	248, 275, 283, 366, 386, 398, 1349
FaqI	GGGAC	1 cut(s)	710
FatI	CATG	7 cut(s)	244, 271, 279, 362, 382, 394, 1345
FauNDI	CATATG	1 cut(s)	1354
FbaI	TGATCA	2 cut(s)	256, 355
Fnu4HI	GCNGC	3 cut(s)	552, 963, 1107
FokI	GGATG	5 cut(s)	41, 250, 894, 1087, 1255
Fsp4HI	GCNGC	3 cut(s)	552, 963, 1107
FspBI	CTAG	1 cut(s)	213
GluI	GCNGC	3 cut(s)	552, 963, 1107
HaeIII	GGCC	1 cut(s)	501
HapII	CCGG	1 cut(s)	1036
Hin1II	CATG	7 cut(s)	248, 275, 283, 366, 386, 398, 1349
HinfI	GANTC	5 cut(s)	249, 575, 603, 784, 1208
HpaII	CCGG	1 cut(s)	1036
HphI	GGTGA	1 cut(s)	434
Hpy166II	GTNNAC	2 cut(s)	1012, 1018
Hpy188I	TCNGA	3 cut(s)	299, 466, 1218
Hpy188III	TCNNGA	4 cut(s)	600, 692, 1289, 1346
Hpy8I	GTNNAC	2 cut(s)	1012, 1018
HpyAV	CCTTC	4 cut(s)	343, 589, 593, 1127
HpyCH4IV	ACGT	1 cut(s)	1014
HpyF10VI	GCNNNNNNNGC	1 cut(s)	754
HpyF3I	CTNAG	2 cut(s)	905, 1164
HpySE526I	ACGT	1 cut(s)	1014
Hsp92II	CATG	7 cut(s)	248, 275, 283, 366, 386, 398, 1349
Ksp22I	TGATCA	2 cut(s)	256, 355
Kzo9I	GATC	4 cut(s)	256, 329, 355, 397
LmnI	GCTCC	2 cut(s)	1047, 1103
Lsp1109I	GCAGC	2 cut(s)	563, 949
LweI	GCATC	3 cut(s)	19, 872, 1295
MaeI	CTAG	1 cut(s)	213
MaeII	ACGT	1 cut(s)	1014
MaeIII	GTNAC	1 cut(s)	795
MalI	GATC	4 cut(s)	258, 331, 357, 399
MbiI	CCGCTC	1 cut(s)	1106
MboI	GATC	4 cut(s)	256, 329, 355, 397
MboII	GAAGA	3 cut(s)	110, 179, 302
MflI	RGATCY	1 cut(s)	329
MlsI	TGGCCA	1 cut(s)	501
MluNI	TGGCCA	1 cut(s)	501
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	8 cut(s)	159, 162, 836, 1032, 1147, 1233, 1267, 1293
Mox20I	TGGCCA	1 cut(s)	501
Mph1103I	ATGCAT	2 cut(s)	223, 384
MroXI	GAANNNNTTC	1 cut(s)	1095
MscI	TGGCCA	1 cut(s)	501
MseI	TTAA	8 cut(s)	74, 312, 624, 704, 842, 929, 1059, 1262
Msp20I	TGGCCA	1 cut(s)	501
MspCI	CTTAAG	1 cut(s)	623
MspI	CCGG	1 cut(s)	1036
MspR9I	CCNGG	2 cut(s)	1036, 1138
Mva1269I	GAATGC	1 cut(s)	995
MvaI	CCWGG	1 cut(s)	1138
MvnI	CGCG	2 cut(s)	943, 1314
MwoI	GCNNNNNNNGC	1 cut(s)	754
NciI	CCSGG	1 cut(s)	1036
NdeI	CATATG	1 cut(s)	1354
NdeII	GATC	4 cut(s)	256, 329, 355, 397
NlaIII	CATG	7 cut(s)	248, 275, 283, 366, 386, 398, 1349
NlaIV	GGNNCC	1 cut(s)	1043
NsiI	ATGCAT	2 cut(s)	223, 384
NspI	RCATGY	1 cut(s)	366
PagI	TCATGA	1 cut(s)	1345
PcsI	WCGNNNNNNNCGW	1 cut(s)	947
PctI	GAATGC	1 cut(s)	995
PdmI	GAANNNNTTC	1 cut(s)	1095
PfeI	GAWTC	5 cut(s)	249, 575, 603, 784, 1208
PflFI	GACNNNGTC	1 cut(s)	165
PkrI	GCNGC	3 cut(s)	553, 964, 1108
PshAI	GACNNNNGTC	1 cut(s)	722
Psp6I	CCWGG	1 cut(s)	1136
PspGI	CCWGG	1 cut(s)	1136
PspN4I	GGNNCC	1 cut(s)	1043
PspPI	GGNCC	2 cut(s)	1201, 1332
PsuI	RGATCY	1 cut(s)	329
PsyI	GACNNNGTC	1 cut(s)	165
RsaI	GTAC	2 cut(s)	405, 1068
RsaNI	GTAC	2 cut(s)	404, 1067
SaqAI	TTAA	8 cut(s)	74, 312, 624, 704, 842, 929, 1059, 1262
SatI	GCNGC	3 cut(s)	552, 963, 1107
Sau3AI	GATC	4 cut(s)	256, 329, 355, 397
Sau96I	GGNCC	2 cut(s)	1201, 1332
ScrFI	CCNGG	2 cut(s)	1036, 1138
SfaNI	GCATC	3 cut(s)	19, 872, 1295
SfcI	CTRYAG	1 cut(s)	546
SinI	GGWCC	2 cut(s)	1201, 1332
SmlI	CTYRAG	2 cut(s)	623, 697
SmoI	CTYRAG	2 cut(s)	623, 697
SpeI	ACTAGT	1 cut(s)	212
SsiI	CCGC	2 cut(s)	541, 1106
SspMI	CTAG	1 cut(s)	213
StyD4I	CCNGG	2 cut(s)	1034, 1136
TaiI	ACGT	1 cut(s)	1017
TaqI	TCGA	1 cut(s)	898
TatI	WGTACW	1 cut(s)	403
TauI	GCSGC	1 cut(s)	1109
TfiI	GAWTC	5 cut(s)	249, 575, 603, 784, 1208
Tru1I	TTAA	8 cut(s)	74, 312, 624, 704, 842, 929, 1059, 1262
Tru9I	TTAA	8 cut(s)	74, 312, 624, 704, 842, 929, 1059, 1262
TseI	GCWGC	2 cut(s)	551, 962
TspDTI	ATGAA	4 cut(s)	260, 588, 723, 1200
TspGWI	ACGGA	1 cut(s)	1087
Tth111I	GACNNNGTC	1 cut(s)	165
Vha464I	CTTAAG	1 cut(s)	623
VpaK11BI	GGWCC	2 cut(s)	1201, 1332
XapI	RAATTY	3 cut(s)	766, 1147, 1338
XceI	RCATGY	1 cut(s)	366
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1316
XmnI	GAANNNNTTC	1 cut(s)	1095
XspI	CTAG	1 cut(s)	213
Zsp2I	ATGCAT	2 cut(s)	223, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.