Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001156

Physical Location & Seq

Genomic Coordinates Forward (+)

28099027 .. 28099461

Gene Structure 435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG279500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGAGTTATCTTGCTGCATTGCGTACTTTGATAATAGGTGGTTGTGAGCAACTCGATCTGGTGAGCCAACATTATCAAGCAATTCCATTGAGGCTCGAAAATTTGGTTATTGATGGACTACCACGGATCACGGAGTTGCCTGAATGGTTTCGAAAAGCTGCCAACACCCTACGGTACTTGCACATTGAAGATTGTTCCAATTTGGGTTCATTACCAGGGTGGCTCACAAATCTAACATCACTTAAAAAGCTTGTTCTCACTGATTGCCCCAAATTGTTGTCACTTCCAGAAGGGATGGATCGTCTCACTGCCTTGAGAGACTTGAAGATAGAATATTGTCCCGAGTTGGAGAGAAGATGCAAGCGTGACACTGGTGAAGATTGGCCAAAGATTGCTCGTATTCCAAACCTTTCTATATCAGACTCTGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

144

Amino Acids

16.43

Weight (kDa)

5.48

Isoelectric Point (pI)

52.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_R13L1-DRL21	PF25019	31 - 87	9.9e-06	R13L1/DRL21 LRRs
LRR_14	PF23598	35 - 142	1.3e-06	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001156)

Species	Orthologous Gene IDs
malus_domestica	MD09G1161800.v1.1 MD09G1161900.v1.1 MD12G1180400.v1.1 MD14G1068500.v1.1 MD14G1068900.v1.1 MD14G1069100.v1.1 MD14G1070400.v1.1 MD14G1072100.v1.1 MD14G1072300.v1.1 MD14G1072500.v1.1
prunus_persica	Prupe.7G033700_v2.0.a1 Prupe.7G060200_v2.0.a1 Prupe.7G060300_v2.0.a1 Prupe.7G062200_v2.0.a1 Prupe.7G062300_v2.0.a1 Prupe.7G062500_v2.0.a1 Prupe.7G062600_v2.0.a1 Prupe.7G062700_v2.0.a1 Prupe.7G062800_v2.0.a1 Prupe.7G062900_v2.0.a1 Prupe.7G063000_v2.0.a1 Prupe.7G063800_v2.0.a1
pyrus_communis	pycom12g17000 pycom12g17010 pycom14g05670 pycom14g05690 pycom14g05730 pycom14g05810 pycom14g05820 pycom14g05860 pycom14g05900 pycom14g05920 pycom14g05950 pycom14g05960 pycom14g06200
rosa_chinensis	RchiOBHm_Chr3g0482391 RchiOBHm_Chr3g0482451 RchiOBHm_Chr5g0007861
rosa_multiflora	Rmu_sc0002969.1_g000005 Rmu_sc0013521.1_g000002 Rmu_sc0013521.1_g000003 Rmu_sc0021597.1_g000001
rosa_roxburghii	Rroxscaffold_6G00399360
rosa_rugosa	Rorug03G0193500 Rorug03G0195900 Rorug03G0196100
rosa_samantha	Rh1BG172200 Rh2CG271300 Rh3BG282500 Rh3BG282900 Rh3BG283100 Rh3CG279500 Rh3DG275300 Rh3DG275700
rosa_wichuraiana	Rw3G022230 Rw3G022260 Rw3G022280 Rw3G022310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	134, 306
AcoI	YGGCCR	1 cut(s)	383
AcsI	RAATTY	1 cut(s)	100
AfaI	GTAC	2 cut(s)	25, 176
AgsI	TTSAA	2 cut(s)	188, 325
AjnI	CCWGG	1 cut(s)	214
AluBI	AGCT	2 cut(s)	158, 250
AluI	AGCT	2 cut(s)	158, 250
Alw26I	GTCTC	2 cut(s)	308, 312
AlwI	GGATC	2 cut(s)	134, 306
AlwNI	CAGNNNCTG	1 cut(s)	425
Ama87I	CYCGRG	1 cut(s)	341
AoxI	GGCC	1 cut(s)	383
ApeKI	GCWGC	2 cut(s)	14, 158
ApoI	RAATTY	1 cut(s)	100
Asp700I	GAANNNNTTC	1 cut(s)	147
AsuHPI	GGTGA	2 cut(s)	73, 386
AsuII	TTCGAA	1 cut(s)	151
AvaI	CYCGRG	1 cut(s)	341
BalI	TGGCCA	1 cut(s)	385
BbvI	GCAGC	1 cut(s)	145
BccI	CCATC	2 cut(s)	107, 289
BciT130I	CCWGG	1 cut(s)	216
BcoDI	GTCTC	2 cut(s)	308, 312
BisI	GCNGC	2 cut(s)	15, 159
BlsI	GCNGC	2 cut(s)	16, 160
Bme1390I	CCNGG	1 cut(s)	216
BmeT110I	CYCGRG	1 cut(s)	341
BmrFI	CCNGG	1 cut(s)	216
BmsI	GCATC	1 cut(s)	347
Bpu14I	TTCGAA	1 cut(s)	151
BpuEI	CTTGAG	1 cut(s)	334
BsaJI	CCNNGG	2 cut(s)	122, 215
Bse1I	ACTGG	1 cut(s)	376
Bse3DI	GCAATG	1 cut(s)	17
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	2 cut(s)	122, 215
BseGI	GGATG	1 cut(s)	300
BseMI	GCAATG	1 cut(s)	17
BseNI	ACTGG	1 cut(s)	376
BseXI	GCAGC	1 cut(s)	145
BshFI	GGCC	1 cut(s)	385
BsiHKCI	CYCGRG	1 cut(s)	341
BslFI	GGGAC	1 cut(s)	324
BsmAI	GTCTC	2 cut(s)	308, 312
BsmBI	CGTCTC	1 cut(s)	308
BsmFI	GGGAC	1 cut(s)	324
BsnI	GGCC	1 cut(s)	385
BsoBI	CYCGRG	1 cut(s)	341
Bsp119I	TTCGAA	1 cut(s)	151
Bsp143I	GATC	3 cut(s)	55, 126, 298
BspANI	GGCC	1 cut(s)	385
BspPI	GGATC	2 cut(s)	134, 306
BspT104I	TTCGAA	1 cut(s)	151
BsrDI	GCAATG	1 cut(s)	17
BsrI	ACTGG	1 cut(s)	376
BssECI	CCNNGG	2 cut(s)	122, 215
BssMI	GATC	3 cut(s)	55, 126, 298
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	1 cut(s)	174
Bst6I	CTCTTC	1 cut(s)	423
BstBI	TTCGAA	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	362
BstDSI	CCRYGG	1 cut(s)	122
BstF5I	GGATG	1 cut(s)	300
BstKTI	GATC	3 cut(s)	58, 129, 301
BstMAI	GTCTC	2 cut(s)	308, 312
BstMBI	GATC	3 cut(s)	55, 126, 298
BstNI	CCWGG	1 cut(s)	216
BstSCI	CCNGG	1 cut(s)	214
BstV1I	GCAGC	1 cut(s)	145
BsuRI	GGCC	1 cut(s)	385
BtgI	CCRYGG	1 cut(s)	122
BtsCI	GGATG	1 cut(s)	300
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	3 cut(s)	258, 306, 369
Cac8I	GCNNGC	1 cut(s)	362
CaiI	CAGNNNCTG	1 cut(s)	425
Csp6I	GTAC	2 cut(s)	24, 175
CviJI	RGCY	6 cut(s)	66, 94, 158, 223, 250, 385
CviKI_1	RGCY	6 cut(s)	66, 94, 158, 223, 250, 385
CviQI	GTAC	2 cut(s)	24, 175
DpnI	GATC	3 cut(s)	57, 128, 300
DpnII	GATC	3 cut(s)	55, 126, 298
EaeI	YGGCCR	1 cut(s)	383
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
Eco88I	CYCGRG	1 cut(s)	341
EcoRII	CCWGG	1 cut(s)	214
Esp3I	CGTCTC	1 cut(s)	308
FaiI	YATR	1 cut(s)	416
FaqI	GGGAC	1 cut(s)	324
Fnu4HI	GCNGC	2 cut(s)	15, 159
FokI	GGATG	1 cut(s)	307
Fsp4HI	GCNGC	2 cut(s)	15, 159
GluI	GCNGC	2 cut(s)	15, 159
HaeIII	GGCC	1 cut(s)	385
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	1 cut(s)	422
HphI	GGTGA	2 cut(s)	73, 386
Hpy188I	TCNGA	2 cut(s)	421, 427
Hpy188III	TCNNGA	2 cut(s)	287, 341
HpyAV	CCTTC	1 cut(s)	284
HpyCH4III	ACNGT	1 cut(s)	174
HpyCH4V	TGCA	3 cut(s)	17, 181, 360
Kzo9I	GATC	3 cut(s)	55, 126, 298
LpnPI	CCDG	6 cut(s)	44, 153, 201, 228, 300, 357
Lsp1109I	GCAGC	1 cut(s)	145
LweI	GCATC	1 cut(s)	347
MaeIII	GTNAC	2 cut(s)	279, 365
MalI	GATC	3 cut(s)	57, 128, 300
MboI	GATC	3 cut(s)	55, 126, 298
MboII	GAAGA	4 cut(s)	200, 337, 366, 389
MlsI	TGGCCA	1 cut(s)	385
MluCI	AATT	4 cut(s)	81, 100, 199, 272
MluNI	TGGCCA	1 cut(s)	385
MlyI	GAGTC	1 cut(s)	416
MmeI	TCCRAC	1 cut(s)	327
MnlI	CCTC	1 cut(s)	84
Mox20I	TGGCCA	1 cut(s)	385
MroXI	GAANNNNTTC	1 cut(s)	147
MscI	TGGCCA	1 cut(s)	385
MseI	TTAA	1 cut(s)	243
Msp20I	TGGCCA	1 cut(s)	385
MspR9I	CCNGG	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	216
NdeII	GATC	3 cut(s)	55, 126, 298
NmuCI	GTSAC	2 cut(s)	279, 365
NspV	TTCGAA	1 cut(s)	151
PdmI	GAANNNNTTC	1 cut(s)	147
PkrI	GCNGC	2 cut(s)	16, 160
PleI	GAGTC	1 cut(s)	416
PpsI	GAGTC	1 cut(s)	416
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PstNI	CAGNNNCTG	1 cut(s)	425
RsaI	GTAC	2 cut(s)	25, 176
RsaNI	GTAC	2 cut(s)	24, 175
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	2 cut(s)	15, 159
Sau3AI	GATC	3 cut(s)	55, 126, 298
SchI	GAGTC	1 cut(s)	416
ScrFI	CCNGG	1 cut(s)	216
SetI	ASST	4 cut(s)	40, 160, 252, 411
SfaNI	GCATC	1 cut(s)	347
SfuI	TTCGAA	1 cut(s)	151
SmlI	CTYRAG	1 cut(s)	313
SmoI	CTYRAG	1 cut(s)	313
Sse9I	AATT	4 cut(s)	81, 100, 199, 272
SspI	AATATT	1 cut(s)	335
StyD4I	CCNGG	1 cut(s)	214
TaaI	ACNGT	1 cut(s)	174
TaqI	TCGA	3 cut(s)	54, 96, 151
TasI	AATT	4 cut(s)	81, 100, 199, 272
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	3 cut(s)	265, 313, 376
TseFI	GTSAC	2 cut(s)	279, 365
TseI	GCWGC	2 cut(s)	14, 158
Tsp45I	GTSAC	2 cut(s)	279, 365
TspDTI	ATGAA	1 cut(s)	198
TspGWI	ACGGA	2 cut(s)	139, 146
TspRI	CASTG	3 cut(s)	265, 313, 376
XapI	RAATTY	1 cut(s)	100
XmnI	GAANNNNTTC	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.