Rorug03G0193500

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0001156
Physical Location & Seq
Forward (+)
17000418 .. 17004026
3609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0193500.1

Sequence Viewer

Length: 1449 bp
ATGGCGACGTATGCATCCACGCATTTTACTTTTTCTGATACTCGAAACCCAGTTGGGGTTCTAACAAGACTGGGAGGGAGAGTATTAGTGGAGAATCACTTGGAAAGAGTTAGAAGTGTGAAAATGCTGCCCGAGAGCAAGTTTGGATTTTTGGGTGCAATCCATAAGTCGACTTTGCCTCAATTTAAGTGCTCAGCCAGCTCTCACAGTGTGGGTTCGTATCCGAATAAAGACCCTTTTCTGAATCTACACCCTGAGGTTTCTATGCTTAGAGGTGAGGGCAATAATACGTCGAGCAATCTGAGGAAAGATACTCCAGGTGGGAATGTGACTGAGAGCTTGAGTGAGAAATCTCTTCCGAATAATTACAACGAAGCAAAGATTAAGGTTATTGGCGTTGGTGGTGGAGGGTCAAATGCAGTCAATCGTATGATTGAGAGTGCAATGAAGGGTGTGGAGTTCTGGATTGTTAACACTGATGTTCAAGCCATGAGAATGTCGCCTGTGTTTCCTGAGAACCGTTTACAGATTGGTCAAGAGCTTACCCGGGGTCTTGGTGCTGGTGGAAACCCGGATGTTGGTATGAATGCTGCCAAAGAAAGCAGAGAATCGATAGAAGAAGCGCTATATGGGTCAGACATGGTTTTCGTTACGGCTGGAATGGGTGGAGGAACTGGCACTGGCGGAGCTCCTGTCGTTGCAGGTGTTGCAAAATCAATGGGTATATTGACGGTTGGTGTTGTGACAACCCCTTTCTCCTTTGAGGGACGAAAAAGGGCAGTTCAAGCCCAGGAAGGGATTGCAGCTTTGAGAGAGAATGTTGACACACTGATAGTCATTCCAAATGACAAGTTATTGACTGCAGTCTCCCAGTCTACCCCAGTAACAGAGGCATTTAATCTAGCTGATGATATTTTACGACAAGGTGTTCGTGGTATCTCTGATATAATCACGATTCCTGGGCTGGTAAATGTCGACTTTGCTGATGTAAGGGCTATAATGGCGAATGCAGGTTCTTCATTGATGGGGATAGGAACTGCAACTGGGAAGACAAGGGCAAGAGATGCTGCGTTAAATGCCATTCAATCACCTCTATTAGATATCGGTATAGAGAGGGCTACTGGAATTGTCTGGAACATAACTGGTGGAACTGATTTGACACTCTATGAGGTAAATGCTGCAGCAGAGGTTATATATGACCTTGTTGATCCAACAGCAAATTTAATATTTGGAGCAGTGACAGATCCATCACTCAGTGGTCAAGTTAGCATCACTCTAATTGCTACTGGATTCAAACGCCAAGAAGAAAGTGATGGGAGGCCACTCCAGGCACAAGGAGACATTACCCTTGGAATCAATCGAAGACCTTCGTCCTTCTCAGAAGGTAGTTCAGTTGAGATTCCTGATTTCTTGAAGAAGAAAGGACGCTCACGTTATCCAAGAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

482

Amino Acids

51.04

Weight (kDa)

6.29

Isoelectric Point (pI)

37.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tubulin PF00091 127 - 288 2.8e-47 Tubulin/FtsZ family, GTPase domain
FtsZ_C PF12327 338 - 432 1.6e-29 FtsZ family, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 692
Acc36I ACCTGC 2 cut(s) 692, 1001
AccI GTMKAC 3 cut(s) 170, 875, 975
AciI CCGC 1 cut(s) 684
AclWI GGATC 2 cut(s) 1202, 1238
AcsI RAATTY 1 cut(s) 1219
AdeI CACNNNGTG 2 cut(s) 211, 1256
AfeI AGCGCT 1 cut(s) 624
AfiI CCNNNNNNNGG 3 cut(s) 55, 578, 795
AgsI TTSAA 5 cut(s) 485, 785, 1085, 1294, 1414
AjnI CCWGG 4 cut(s) 316, 789, 958, 1326
AluBI AGCT 6 cut(s) 201, 339, 541, 689, 806, 905
AluI AGCT 6 cut(s) 201, 339, 541, 689, 806, 905
Alw21I GWGCWC 2 cut(s) 194, 691
Alw26I GTCTC 2 cut(s) 871, 1332
AlwI GGATC 2 cut(s) 1202, 1238
Ama87I CYCGRG 2 cut(s) 131, 546
Aor51HI AGCGCT 1 cut(s) 624
AoxI GGCC 1 cut(s) 1319
ApeKI GCWGC 6 cut(s) 127, 590, 803, 1067, 1178, 1181
ApoI RAATTY 1 cut(s) 1219
ArsI GACNNNNNNTTYG 4 cut(s) 629, 661, 912, 944
Asp700I GAANNNNTTC 1 cut(s) 1366
AspLEI GCGC 1 cut(s) 625
AsuC2I CCSGG 3 cut(s) 547, 548, 572
AsuHPI GGTGA 2 cut(s) 287, 1080
AvaI CYCGRG 2 cut(s) 131, 546
AxyI CCTNAGG 1 cut(s) 255
BanII GRGCYC 1 cut(s) 691
BbsI GAAGAC 2 cut(s) 1055, 1369
Bbv12I GWGCWC 2 cut(s) 194, 691
BbvI GCAGC 6 cut(s) 114, 577, 815, 1054, 1165, 1193
BccI CCATC 3 cut(s) 1018, 1255, 1307
BceAI ACGGC 1 cut(s) 669
BciT130I CCWGG 4 cut(s) 318, 791, 960, 1328
BciVI GTATCC 1 cut(s) 231
BcnI CCSGG 3 cut(s) 547, 548, 572
BcoDI GTCTC 2 cut(s) 871, 1332
BfaI CTAG 1 cut(s) 902
BfmI CTRYAG 2 cut(s) 861, 1179
BfoI RGCGCY 1 cut(s) 626
BfuAI ACCTGC 2 cut(s) 692, 1001
BfuI GTATCC 1 cut(s) 231
BisI GCNGC 6 cut(s) 128, 591, 804, 1068, 1179, 1182
BlpI GCTNAGC 1 cut(s) 193
BlsI GCNGC 6 cut(s) 129, 592, 805, 1069, 1180, 1183
Bme1390I CCNGG 7 cut(s) 318, 547, 548, 572, 791, 960, 1328
BmeT110I CYCGRG 2 cut(s) 131, 546
BmrFI CCNGG 7 cut(s) 318, 547, 548, 572, 791, 960, 1328
BmrI ACTGGG 5 cut(s) 44, 80, 865, 875, 1053
BmsI GCATC 3 cut(s) 23, 1054, 1278
BmuI ACTGGG 5 cut(s) 44, 80, 865, 875, 1053
BoxI GACNNNNGTC 2 cut(s) 863, 1369
BpiI GAAGAC 2 cut(s) 1055, 1369
BpmI CTGGAG 2 cut(s) 300, 1310
Bpu1102I GCTNAGC 1 cut(s) 193
BpuEI CTTGAG 1 cut(s) 361
BpuMI CCSGG 3 cut(s) 547, 548, 572
Bsa29I ATCGAT 1 cut(s) 611
BsaJI CCNNGG 5 cut(s) 546, 547, 789, 959, 1348
BsaXI ACNNNNNCTCC 4 cut(s) 66, 96, 678, 708
Bsc4I CCNNNNNNNGG 3 cut(s) 55, 578, 795
Bse21I CCTNAGG 1 cut(s) 255
Bse3DI GCAATG 1 cut(s) 450
BseBI CCWGG 4 cut(s) 318, 791, 960, 1328
BseCI ATCGAT 1 cut(s) 611
BseDI CCNNGG 5 cut(s) 546, 547, 789, 959, 1348
BseGI GGATG 2 cut(s) 14, 580
BseLI CCNNNNNNNGG 3 cut(s) 55, 578, 795
BseMI GCAATG 1 cut(s) 450
BseMII CTCAG 7 cut(s) 207, 246, 293, 324, 504, 1267, 1392
BseXI GCAGC 6 cut(s) 114, 577, 815, 1054, 1165, 1193
BshFI GGCC 1 cut(s) 1321
BshVI ATCGAT 1 cut(s) 611
BsiHKAI GWGCWC 2 cut(s) 194, 691
BsiHKCI CYCGRG 2 cut(s) 131, 546
BsiSI CCGG 2 cut(s) 547, 572
BslFI GGGAC 1 cut(s) 780
BslI CCNNNNNNNGG 3 cut(s) 55, 578, 795
BsmAI GTCTC 2 cut(s) 871, 1332
BsmFI GGGAC 1 cut(s) 780
BsmI GAATGC 2 cut(s) 592, 1012
BsnI GGCC 1 cut(s) 1321
BsoBI CYCGRG 2 cut(s) 131, 546
Bsp1286I GDGCHC 2 cut(s) 194, 691
Bsp143I GATC 2 cut(s) 1207, 1243
Bsp1720I GCTNAGC 1 cut(s) 193
BspACI CCGC 1 cut(s) 684
BspANI GGCC 1 cut(s) 1321
BspCNI CTCAG 7 cut(s) 206, 247, 294, 325, 505, 1266, 1391
BspDI ATCGAT 1 cut(s) 611
BspMAI CTGCAG 2 cut(s) 865, 1183
BspMI ACCTGC 2 cut(s) 692, 1001
BspPI GGATC 2 cut(s) 1202, 1238
BsrDI GCAATG 1 cut(s) 450
BssECI CCNNGG 5 cut(s) 546, 547, 789, 959, 1348
BssMI GATC 2 cut(s) 1207, 1243
BssT1I CCWWGG 1 cut(s) 1348
Bst2UI CCWGG 4 cut(s) 318, 791, 960, 1328
Bst4CI ACNGT 3 cut(s) 209, 521, 733
Bst6I CTCTTC 1 cut(s) 360
BstAPI GCANNNNNTGC 2 cut(s) 707, 1064
BstC8I GCNNGC 1 cut(s) 199
BstDEI CTNAG 8 cut(s) 193, 255, 269, 302, 333, 513, 1253, 1378
BstF5I GGATG 2 cut(s) 14, 580
BstH2I RGCGCY 1 cut(s) 626
BstHHI GCGC 1 cut(s) 625
BstKTI GATC 2 cut(s) 1210, 1246
BstMAI GTCTC 2 cut(s) 871, 1332
BstMBI GATC 2 cut(s) 1207, 1243
BstMWI GCNNNNNNNGC 7 cut(s) 11, 198, 707, 785, 1001, 1064, 1076
BstNI CCWGG 4 cut(s) 318, 791, 960, 1328
BstPAI GACNNNNGTC 2 cut(s) 863, 1369
BstSCI CCNGG 7 cut(s) 316, 545, 546, 570, 789, 958, 1326
BstSFI CTRYAG 2 cut(s) 861, 1179
BstV1I GCAGC 6 cut(s) 114, 577, 815, 1054, 1165, 1193
BstV2I GAAGAC 2 cut(s) 1055, 1369
BstX2I RGATCY 1 cut(s) 1243
BstYI RGATCY 1 cut(s) 1243
Bsu15I ATCGAT 1 cut(s) 611
Bsu36I CCTNAGG 1 cut(s) 255
BsuI GTATCC 1 cut(s) 231
BsuRI GGCC 1 cut(s) 1321
BsuTUI ATCGAT 1 cut(s) 611
BtsCI GGATG 2 cut(s) 14, 580
BtsI GCAGTG 1 cut(s) 1242
BtsIMutI CAGTG 6 cut(s) 214, 474, 678, 827, 1242, 1261
BveI ACCTGC 2 cut(s) 692, 1001
Cac8I GCNNGC 1 cut(s) 199
CfoI GCGC 1 cut(s) 625
Cfr9I CCCGGG 1 cut(s) 546
ClaI ATCGAT 1 cut(s) 611
CseI GACGC 1 cut(s) 1434
CviAII CATG 2 cut(s) 490, 640
DdeI CTNAG 8 cut(s) 193, 255, 269, 302, 333, 513, 1253, 1378
DpnI GATC 2 cut(s) 1209, 1245
DpnII GATC 2 cut(s) 1207, 1243
DraIII CACNNNGTG 2 cut(s) 211, 1256
Eam1104I CTCTTC 1 cut(s) 360
EarI CTCTTC 1 cut(s) 360
EciI GGCGGA 1 cut(s) 699
Ecl136II GAGCTC 1 cut(s) 689
Eco130I CCWWGG 1 cut(s) 1348
Eco24I GRGCYC 1 cut(s) 691
Eco32I GATATC 1 cut(s) 1102
Eco47III AGCGCT 1 cut(s) 624
Eco53kI GAGCTC 1 cut(s) 689
Eco81I CCTNAGG 1 cut(s) 255
Eco88I CYCGRG 2 cut(s) 131, 546
EcoICRI GAGCTC 1 cut(s) 689
EcoRII CCWGG 4 cut(s) 316, 789, 958, 1326
EcoRV GATATC 1 cut(s) 1102
EcoT14I CCWWGG 1 cut(s) 1348
EcoT22I ATGCAT 1 cut(s) 16
EcoT38I GRGCYC 1 cut(s) 691
ErhI CCWWGG 1 cut(s) 1348
FaeI CATG 2 cut(s) 493, 643
FaqI GGGAC 1 cut(s) 780
FatI CATG 2 cut(s) 489, 639
FblI GTMKAC 3 cut(s) 170, 875, 975
Fnu4HI GCNGC 6 cut(s) 128, 591, 804, 1068, 1179, 1182
FokI GGATG 1 cut(s) 587
FriOI GRGCYC 1 cut(s) 691
Fsp4HI GCNGC 6 cut(s) 128, 591, 804, 1068, 1179, 1182
FspBI CTAG 1 cut(s) 902
GlaI GCGC 1 cut(s) 624
GluI GCNGC 6 cut(s) 128, 591, 804, 1068, 1179, 1182
GsuI CTGGAG 2 cut(s) 300, 1310
HaeII RGCGCY 1 cut(s) 626
HaeIII GGCC 1 cut(s) 1321
HapII CCGG 2 cut(s) 547, 572
HgaI GACGC 1 cut(s) 1434
HhaI GCGC 1 cut(s) 625
Hin1II CATG 2 cut(s) 493, 643
Hin6I GCGC 1 cut(s) 623
HinP1I GCGC 1 cut(s) 623
HincII GTYRAC 4 cut(s) 171, 472, 823, 976
HindII GTYRAC 4 cut(s) 171, 472, 823, 976
HinfI GANTC 7 cut(s) 94, 244, 608, 955, 1290, 1353, 1399
HpaI GTTAAC 1 cut(s) 472
HpaII CCGG 2 cut(s) 547, 572
HphI GGTGA 2 cut(s) 287, 1080
Hpy166II GTNNAC 6 cut(s) 171, 472, 524, 823, 876, 976
Hpy188I TCNGA 8 cut(s) 37, 225, 243, 303, 360, 637, 943, 1381
Hpy188III TCNNGA 7 cut(s) 463, 512, 536, 952, 1132, 1403, 1411
Hpy8I GTNNAC 6 cut(s) 171, 472, 524, 823, 876, 976
Hpy99I CGWCG 2 cut(s) 10, 295
HpyAV CCTTC 5 cut(s) 442, 788, 1376, 1377, 1384
HpyCH4III ACNGT 3 cut(s) 209, 521, 733
HpyCH4IV ACGT 3 cut(s) 8, 290, 1432
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 198, 707, 785, 1001, 1064, 1076
HpyF3I CTNAG 8 cut(s) 193, 255, 269, 302, 333, 513, 1253, 1378
HpySE526I ACGT 3 cut(s) 8, 290, 1432
Hsp92II CATG 2 cut(s) 493, 643
HspAI GCGC 1 cut(s) 623
KspAI GTTAAC 1 cut(s) 472
Kzo9I GATC 2 cut(s) 1207, 1243
LmnI GCTCC 3 cut(s) 686, 694, 1232
Lsp1109I GCAGC 6 cut(s) 114, 577, 815, 1054, 1165, 1193
LweI GCATC 3 cut(s) 23, 1054, 1278
MaeI CTAG 1 cut(s) 902
MaeII ACGT 3 cut(s) 8, 290, 1432
MaeIII GTNAC 5 cut(s) 328, 649, 742, 883, 1237
MalI GATC 2 cut(s) 1209, 1245
MboI GATC 2 cut(s) 1207, 1243
MboII GAAGA 8 cut(s) 347, 629, 1008, 1060, 1316, 1374, 1426, 1429
MflI RGATCY 1 cut(s) 1243
MhlI GDGCHC 2 cut(s) 194, 691
MluCI AATT 5 cut(s) 182, 364, 1125, 1219, 1278
MmeI TCCRAC 1 cut(s) 1235
Mph1103I ATGCAT 1 cut(s) 16
MroXI GAANNNNTTC 1 cut(s) 1366
MseI TTAA 6 cut(s) 186, 384, 471, 897, 1073, 1223
MslI CAYNNNNRTG 1 cut(s) 494
MspI CCGG 2 cut(s) 547, 572
MspR9I CCNGG 7 cut(s) 318, 547, 548, 572, 791, 960, 1328
Mva1269I GAATGC 2 cut(s) 592, 1012
MvaI CCWGG 4 cut(s) 318, 791, 960, 1328
MwoI GCNNNNNNNGC 7 cut(s) 11, 198, 707, 785, 1001, 1064, 1076
NciI CCSGG 3 cut(s) 547, 548, 572
NdeII GATC 2 cut(s) 1207, 1243
NlaIII CATG 2 cut(s) 493, 643
NmuCI GTSAC 3 cut(s) 328, 742, 1237
NsiI ATGCAT 1 cut(s) 16
PaqCI CACCTGC 1 cut(s) 692
PctI GAATGC 2 cut(s) 592, 1012
PdmI GAANNNNTTC 1 cut(s) 1366
PfeI GAWTC 7 cut(s) 94, 244, 608, 955, 1290, 1353, 1399
PkrI GCNGC 6 cut(s) 129, 592, 805, 1069, 1180, 1183
PshAI GACNNNNGTC 2 cut(s) 863, 1369
Psp124BI GAGCTC 1 cut(s) 691
Psp6I CCWGG 4 cut(s) 316, 789, 958, 1326
PspGI CCWGG 4 cut(s) 316, 789, 958, 1326
PstI CTGCAG 2 cut(s) 865, 1183
PsuI RGATCY 1 cut(s) 1243
RseI CAYNNNNRTG 1 cut(s) 494
SacI GAGCTC 1 cut(s) 691
SalI GTCGAC 2 cut(s) 169, 974
SaqAI TTAA 6 cut(s) 186, 384, 471, 897, 1073, 1223
SatI GCNGC 6 cut(s) 128, 591, 804, 1068, 1179, 1182
Sau3AI GATC 2 cut(s) 1207, 1243
ScrFI CCNGG 7 cut(s) 318, 547, 548, 572, 791, 960, 1328
SduI GDGCHC 2 cut(s) 194, 691
SfaNI GCATC 3 cut(s) 23, 1054, 1278
SfcI CTRYAG 2 cut(s) 861, 1179
SmaI CCCGGG 1 cut(s) 548
SmiMI CAYNNNNRTG 1 cut(s) 494
SmlI CTYRAG 1 cut(s) 340
SmoI CTYRAG 1 cut(s) 340
Sse9I AATT 5 cut(s) 182, 364, 1125, 1219, 1278
SsiI CCGC 1 cut(s) 684
SspI AATATT 1 cut(s) 1227
SspMI CTAG 1 cut(s) 902
SstI GAGCTC 1 cut(s) 691
StyD4I CCNGG 7 cut(s) 316, 545, 546, 570, 789, 958, 1326
StyI CCWWGG 1 cut(s) 1348
TaaI ACNGT 3 cut(s) 209, 521, 733
TaiI ACGT 3 cut(s) 11, 293, 1435
TaqI TCGA 6 cut(s) 43, 170, 293, 611, 975, 1360
TasI AATT 5 cut(s) 182, 364, 1125, 1219, 1278
TfiI GAWTC 7 cut(s) 94, 244, 608, 955, 1290, 1353, 1399
Tru1I TTAA 6 cut(s) 186, 384, 471, 897, 1073, 1223
Tru9I TTAA 6 cut(s) 186, 384, 471, 897, 1073, 1223
TscAI CASTG 6 cut(s) 214, 481, 685, 834, 1242, 1261
TseFI GTSAC 3 cut(s) 328, 742, 1237
TseI GCWGC 6 cut(s) 127, 590, 803, 1067, 1178, 1181
Tsp45I GTSAC 3 cut(s) 328, 742, 1237
TspDTI ATGAA 3 cut(s) 461, 599, 1008
TspMI CCCGGG 1 cut(s) 546
TspRI CASTG 6 cut(s) 214, 481, 685, 834, 1242, 1261
XapI RAATTY 1 cut(s) 1219
XmaI CCCGGG 1 cut(s) 546
XmiI GTMKAC 3 cut(s) 170, 875, 975
XmnI GAANNNNTTC 1 cut(s) 1366
XspI CTAG 1 cut(s) 902
Zsp2I ATGCAT 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.