Prupe.7G060200_v2.0.a1

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0001156
Physical Location & Seq
Forward (+)
9909626 .. 9911135
1510 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G060200.1

Sequence Viewer

Length: 1467 bp
ATGGCTGAACTTGCCTTTCCTTTGGCAACCAAACTCATTGAAAAGCTCGGGTCCATTACTTCTGAGCACATCTGTTTGGCATGTTGCGTTAAAGCTGATCTGAAAAAGCTTCAGCGCACGATGTCCATCATCAAAGATGTTTTATTGGATGCCGAACAAAAGCAAGAACATAACCAGCAGATACGCAATGATGGTCGCATTTTACCTGCTTTGAGATTGAGTTATACCCGATTGCCTCCTCATTTGAGACAATGTCTTGCTTCTTGTTCCTATCTTCAAAAGGATTGGAATGGATATACTAGTTATGCATTGATAAGATACTGGATGGCACATGGAATCCTTGATCAGTTTCGTGTTCATGGGAACATGGAGTTGGAAGACATCGGAGAGCTGTATTTTAAAGATTTATGGGCGAGATCCTTCTTTCAAAAAGTTATTGATGATCATACATGCTACTTCTTTGATATGCATGGTCTTATCCATGATCTTGTACAATCAGTTGCACAAGGTGAGTGTTTTATAGTGAAGTCTGCAAACACCAAAGACATATTTGAAAATGTTAGACATTTGACATTTTTGGAAGCTGGCCAAAATGTTTCAACAACCTTGCAAAAGTTGAACAAAGTGCGGACTATAGCAGCAGAACGAATAGACATTGATGAATCCTTCCTTCACACTTGCTTTTCAAGATTCAAGTATTTGCGAGTGCTTAAGTTATTGGAAGTATCACTACAAGTGTTGCCAAGTTCCATTGGTTCCCTGAAACATTTGAAATATCTGGACTTGAGTTTAAATGAAGCAATGACGAAAGTCCCCAATTCAATTTGCAGACTGCAGAGCTTGCAAACTCTAAATTTTGGTTATTGTGAGAATCTCCAAGAGTTACCGAGAGATATAAGCAAATTGATAAGCCTCACATCACTTTTCTTAACCACAAAACAAACAAGTTTTACAGAGAATGGGGTGGGATGCTTGAAATCACTTCGATTTCTTAGTATTACCGAGTGTAGTAATTTAACCTTTTTGCCGCGTGAAACGAGCTATCTTGCTGCATTACGAACTCTATGGATAGTAGAATGCAAACTGCTGGATTTGGTGGACGTAAACTATCAAGGAACTCCCCGGAGGCTCCAAAAATTGATTATTAAAGATGTACCACGGATGGTGGCATTGCCTGAATGGTTTCAAGGAGCGGCTAACATCCTTCAACTCTTGGTTATTGCCAGGTGTGAGAATTTGGAGGCATTACCTGAGTGGTTGAGAAGTTTCACATCACTCAGAAAGTTGGTCCTTGATTCATATCCGAAATTGTCATCTCTACCAGGGAGGATGTGTTCTCTTACCTCCTTAAAAGAACTTGTGATTGATGATTGTCCCGAATTGGAGAGGAGATGCCAACGCGACATTGGAGAAGATTGGTCCAAAATTTCTCATGAGCCACATGTTTCCTTTCACTTGTTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

489

Amino Acids

56.17

Weight (kDa)

7.82

Isoelectric Point (pI)

43.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 214
AccBSI CCGCTC 1 cut(s) 1193
AccII CGCG 2 cut(s) 1030, 1401
AciI CCGC 3 cut(s) 628, 1028, 1193
AclWI GGATC 1 cut(s) 411
AcoI YGGCCR 1 cut(s) 586
AcsI RAATTY 3 cut(s) 853, 1234, 1425
AcuI CTGAAG 1 cut(s) 95
AdeI CACNNNGTG 1 cut(s) 509
AfaI GTAC 2 cut(s) 492, 1155
AflII CTTAAG 1 cut(s) 710
AflIII ACRYGT 1 cut(s) 1441
AhlI ACTAGT 1 cut(s) 299
AjnI CCWGG 2 cut(s) 1223, 1321
AjuI GAANNNNNNNTTGG 2 cut(s) 356, 388
AloI GAACNNNNNNTCC 2 cut(s) 1318, 1350
AluBI AGCT 7 cut(s) 46, 95, 109, 391, 584, 840, 1041
AluI AGCT 7 cut(s) 46, 95, 109, 391, 584, 840, 1041
Alw21I GWGCWC 1 cut(s) 69
Alw26I GTCTC 1 cut(s) 241
AlwI GGATC 1 cut(s) 411
Ama87I CYCGRG 1 cut(s) 47
AoxI GGCC 1 cut(s) 586
ApeKI GCWGC 2 cut(s) 638, 1049
ApoI RAATTY 3 cut(s) 853, 1234, 1425
Asp700I GAANNNNTTC 1 cut(s) 1182
AspLEI GCGC 1 cut(s) 117
AspS9I GGNCC 3 cut(s) 51, 1288, 1419
AsuC2I CCSGG 1 cut(s) 1123
AsuHPI GGTGA 1 cut(s) 521
AvaI CYCGRG 1 cut(s) 47
AvaII GGWCC 3 cut(s) 51, 1288, 1419
BalI TGGCCA 1 cut(s) 588
BarI GAAGNNNNNNTAC 2 cut(s) 714, 746
BbsI GAAGAC 1 cut(s) 384
Bbv12I GWGCWC 1 cut(s) 69
BbvI GCAGC 2 cut(s) 650, 1036
BccI CCATC 4 cut(s) 134, 185, 319, 1156
BciT130I CCWGG 2 cut(s) 1225, 1323
BclI TGATCA 2 cut(s) 343, 442
BcnI CCSGG 1 cut(s) 1123
BcoDI GTCTC 1 cut(s) 241
BcuI ACTAGT 1 cut(s) 299
BfaI CTAG 1 cut(s) 300
BfmI CTRYAG 2 cut(s) 633, 833
BfrI CTTAAG 1 cut(s) 710
BfuAI ACCTGC 1 cut(s) 214
BisI GCNGC 4 cut(s) 639, 1028, 1050, 1194
BlsI GCNGC 4 cut(s) 640, 1029, 1051, 1195
Bme1390I CCNGG 3 cut(s) 1123, 1225, 1323
Bme18I GGWCC 3 cut(s) 51, 1288, 1419
BmeT110I CYCGRG 1 cut(s) 47
BmgT120I GGNCC 3 cut(s) 51, 1288, 1419
BmiI GGNNCC 3 cut(s) 52, 757, 1130
BmrFI CCNGG 3 cut(s) 1123, 1225, 1323
BmsI GCATC 3 cut(s) 139, 959, 1382
BoxI GACNNNNGTC 1 cut(s) 809
BpiI GAAGAC 1 cut(s) 384
BpuEI CTTGAG 1 cut(s) 805
BpuMI CCSGG 1 cut(s) 1123
BsaBI GATNNNNATC 2 cut(s) 125, 1299
BsaJI CCNNGG 3 cut(s) 1121, 1157, 1322
BsaXI ACNNNNNCTCC 2 cut(s) 1318, 1348
Bse1I ACTGG 1 cut(s) 326
Bse3DI GCAATG 3 cut(s) 193, 807, 1169
Bse8I GATNNNNATC 2 cut(s) 125, 1299
BseBI CCWGG 2 cut(s) 1225, 1323
BseDI CCNNGG 3 cut(s) 1121, 1157, 1322
BseGI GGATG 6 cut(s) 154, 330, 974, 1167, 1200, 1335
BseJI GATNNNNATC 2 cut(s) 125, 1299
BseMI GCAATG 3 cut(s) 193, 807, 1169
BseMII CTCAG 3 cut(s) 54, 1242, 1291
BseNI ACTGG 1 cut(s) 326
BseRI GAGGAG 2 cut(s) 228, 1402
BseXI GCAGC 2 cut(s) 650, 1036
Bsh1236I CGCG 2 cut(s) 1030, 1401
BshFI GGCC 1 cut(s) 588
BsiHKAI GWGCWC 1 cut(s) 69
BsiHKCI CYCGRG 1 cut(s) 47
BsiSI CCGG 1 cut(s) 1123
BslFI GGGAC 2 cut(s) 797, 1359
BsmAI GTCTC 1 cut(s) 241
BsmFI GGGAC 2 cut(s) 797, 1359
BsmI GAATGC 1 cut(s) 1082
BsnI GGCC 1 cut(s) 588
BsoBI CYCGRG 1 cut(s) 47
Bsp1286I GDGCHC 1 cut(s) 69
Bsp1407I TGTACA 1 cut(s) 490
Bsp143I GATC 5 cut(s) 97, 343, 416, 442, 484
BspACI CCGC 3 cut(s) 628, 1028, 1193
BspANI GGCC 1 cut(s) 588
BspCNI CTCAG 3 cut(s) 55, 1243, 1290
BspFNI CGCG 2 cut(s) 1030, 1401
BspHI TCATGA 1 cut(s) 1432
BspLI GGNNCC 3 cut(s) 52, 757, 1130
BspMAI CTGCAG 1 cut(s) 837
BspMI ACCTGC 1 cut(s) 214
BspPI GGATC 1 cut(s) 411
BspTI CTTAAG 1 cut(s) 710
BsrBI CCGCTC 1 cut(s) 1193
BsrDI GCAATG 3 cut(s) 193, 807, 1169
BsrGI TGTACA 1 cut(s) 490
BsrI ACTGG 1 cut(s) 326
BssECI CCNNGG 3 cut(s) 1121, 1157, 1322
BssMI GATC 5 cut(s) 97, 343, 416, 442, 484
Bst2UI CCWGG 2 cut(s) 1225, 1323
BstAFI CTTAAG 1 cut(s) 710
BstAPI GCANNNNNTGC 1 cut(s) 841
BstAUI TGTACA 1 cut(s) 490
BstC8I GCNNGC 2 cut(s) 586, 842
BstDEI CTNAG 4 cut(s) 63, 992, 1251, 1277
BstDSI CCRYGG 1 cut(s) 1157
BstF5I GGATG 6 cut(s) 154, 330, 974, 1167, 1200, 1335
BstFNI CGCG 2 cut(s) 1030, 1401
BstHHI GCGC 1 cut(s) 117
BstKTI GATC 5 cut(s) 100, 346, 419, 445, 487
BstMAI GTCTC 1 cut(s) 241
BstMBI GATC 5 cut(s) 97, 343, 416, 442, 484
BstMWI GCNNNNNNNGC 2 cut(s) 11, 841
BstNI CCWGG 2 cut(s) 1225, 1323
BstNSI RCATGY 3 cut(s) 84, 453, 1445
BstPAI GACNNNNGTC 1 cut(s) 809
BstSCI CCNGG 3 cut(s) 1121, 1223, 1321
BstSFI CTRYAG 2 cut(s) 633, 833
BstUI CGCG 2 cut(s) 1030, 1401
BstV1I GCAGC 2 cut(s) 650, 1036
BstV2I GAAGAC 1 cut(s) 384
BstX2I RGATCY 1 cut(s) 416
BstYI RGATCY 1 cut(s) 416
BsuRI GGCC 1 cut(s) 588
BtgI CCRYGG 1 cut(s) 1157
BtsCI GGATG 6 cut(s) 154, 330, 974, 1167, 1200, 1335
BveI ACCTGC 1 cut(s) 214
Cac8I GCNNGC 2 cut(s) 586, 842
CciI TCATGA 1 cut(s) 1432
CfoI GCGC 1 cut(s) 117
Cfr13I GGNCC 3 cut(s) 51, 1288, 1419
Csp6I GTAC 2 cut(s) 491, 1154
CviAII CATG 9 cut(s) 81, 332, 359, 367, 450, 470, 482, 1433, 1442
CviQI GTAC 2 cut(s) 491, 1154
DdeI CTNAG 4 cut(s) 63, 992, 1251, 1277
DpnI GATC 5 cut(s) 99, 345, 418, 444, 486
DpnII GATC 5 cut(s) 97, 343, 416, 442, 484
DraI TTTAAA 2 cut(s) 400, 792
DraIII CACNNNGTG 1 cut(s) 509
EaeI YGGCCR 1 cut(s) 586
Eco47I GGWCC 3 cut(s) 51, 1288, 1419
Eco57I CTGAAG 1 cut(s) 95
Eco88I CYCGRG 1 cut(s) 47
EcoRII CCWGG 2 cut(s) 1223, 1321
EcoT22I ATGCAT 2 cut(s) 310, 471
FaeI CATG 9 cut(s) 84, 335, 362, 370, 453, 473, 485, 1436, 1445
FaqI GGGAC 2 cut(s) 797, 1359
FatI CATG 9 cut(s) 80, 331, 358, 366, 449, 469, 481, 1432, 1441
FbaI TGATCA 2 cut(s) 343, 442
Fnu4HI GCNGC 4 cut(s) 639, 1028, 1050, 1194
FokI GGATG 6 cut(s) 161, 337, 981, 1174, 1187, 1342
Fsp4HI GCNGC 4 cut(s) 639, 1028, 1050, 1194
FspBI CTAG 1 cut(s) 300
GlaI GCGC 1 cut(s) 116
GluI GCNGC 4 cut(s) 639, 1028, 1050, 1194
HaeIII GGCC 1 cut(s) 588
HapII CCGG 1 cut(s) 1123
HhaI GCGC 1 cut(s) 117
Hin1II CATG 9 cut(s) 84, 335, 362, 370, 453, 473, 485, 1436, 1445
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 5 cut(s) 336, 662, 690, 871, 1295
HpaII CCGG 1 cut(s) 1123
HphI GGTGA 1 cut(s) 521
Hpy166II GTNNAC 2 cut(s) 1099, 1105
Hpy188I TCNGA 5 cut(s) 64, 102, 386, 1280, 1305
Hpy188III TCNNGA 4 cut(s) 687, 779, 1376, 1433
Hpy8I GTNNAC 2 cut(s) 1099, 1105
HpyAV CCTTC 4 cut(s) 430, 676, 680, 1214
HpyCH4IV ACGT 1 cut(s) 1101
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 841
HpyF3I CTNAG 4 cut(s) 63, 992, 1251, 1277
HpySE526I ACGT 1 cut(s) 1101
Hsp92II CATG 9 cut(s) 84, 335, 362, 370, 453, 473, 485, 1436, 1445
HspAI GCGC 1 cut(s) 115
Ksp22I TGATCA 2 cut(s) 343, 442
Kzo9I GATC 5 cut(s) 97, 343, 416, 442, 484
LmnI GCTCC 2 cut(s) 1134, 1190
Lsp1109I GCAGC 2 cut(s) 650, 1036
LweI GCATC 3 cut(s) 139, 959, 1382
MaeI CTAG 1 cut(s) 300
MaeII ACGT 1 cut(s) 1101
MaeIII GTNAC 1 cut(s) 882
MalI GATC 5 cut(s) 99, 345, 418, 444, 486
MbiI CCGCTC 1 cut(s) 1193
MboI GATC 5 cut(s) 97, 343, 416, 442, 484
MboII GAAGA 3 cut(s) 266, 389, 1424
MflI RGATCY 1 cut(s) 416
MhlI GDGCHC 1 cut(s) 69
MlsI TGGCCA 1 cut(s) 588
MluNI TGGCCA 1 cut(s) 588
MmeI TCCRAC 1 cut(s) 354
MnlI CCTC 8 cut(s) 246, 249, 923, 1119, 1234, 1320, 1354, 1380
Mox20I TGGCCA 1 cut(s) 588
Mph1103I ATGCAT 2 cut(s) 310, 471
MroXI GAANNNNTTC 1 cut(s) 1182
MscI TGGCCA 1 cut(s) 588
MseI TTAA 8 cut(s) 90, 399, 711, 791, 929, 1016, 1146, 1349
Msp20I TGGCCA 1 cut(s) 588
MspCI CTTAAG 1 cut(s) 710
MspI CCGG 1 cut(s) 1123
MspR9I CCNGG 3 cut(s) 1123, 1225, 1323
Mva1269I GAATGC 1 cut(s) 1082
MvaI CCWGG 2 cut(s) 1225, 1323
MvnI CGCG 2 cut(s) 1030, 1401
MwoI GCNNNNNNNGC 2 cut(s) 11, 841
NciI CCSGG 1 cut(s) 1123
NdeII GATC 5 cut(s) 97, 343, 416, 442, 484
NlaIII CATG 9 cut(s) 84, 335, 362, 370, 453, 473, 485, 1436, 1445
NlaIV GGNNCC 3 cut(s) 52, 757, 1130
NsiI ATGCAT 2 cut(s) 310, 471
NspI RCATGY 3 cut(s) 84, 453, 1445
PagI TCATGA 1 cut(s) 1432
PciI ACATGT 1 cut(s) 1441
PctI GAATGC 1 cut(s) 1082
PdmI GAANNNNTTC 1 cut(s) 1182
PfeI GAWTC 5 cut(s) 336, 662, 690, 871, 1295
PflFI GACNNNGTC 1 cut(s) 252
PkrI GCNGC 4 cut(s) 640, 1029, 1051, 1195
PscI ACATGT 1 cut(s) 1441
PshAI GACNNNNGTC 1 cut(s) 809
Psp6I CCWGG 2 cut(s) 1223, 1321
PspGI CCWGG 2 cut(s) 1223, 1321
PspN4I GGNNCC 3 cut(s) 52, 757, 1130
PspPI GGNCC 3 cut(s) 51, 1288, 1419
PstI CTGCAG 1 cut(s) 837
PsuI RGATCY 1 cut(s) 416
PsyI GACNNNGTC 1 cut(s) 252
RsaI GTAC 2 cut(s) 492, 1155
RsaNI GTAC 2 cut(s) 491, 1154
SaqAI TTAA 8 cut(s) 90, 399, 711, 791, 929, 1016, 1146, 1349
SatI GCNGC 4 cut(s) 639, 1028, 1050, 1194
Sau3AI GATC 5 cut(s) 97, 343, 416, 442, 484
Sau96I GGNCC 3 cut(s) 51, 1288, 1419
ScrFI CCNGG 3 cut(s) 1123, 1225, 1323
SduI GDGCHC 1 cut(s) 69
SfaNI GCATC 3 cut(s) 139, 959, 1382
SfcI CTRYAG 2 cut(s) 633, 833
SinI GGWCC 3 cut(s) 51, 1288, 1419
SmlI CTYRAG 2 cut(s) 710, 784
SmoI CTYRAG 2 cut(s) 710, 784
SpeI ACTAGT 1 cut(s) 299
SsiI CCGC 3 cut(s) 628, 1028, 1193
SspMI CTAG 1 cut(s) 300
StyD4I CCNGG 3 cut(s) 1121, 1223, 1321
TaiI ACGT 1 cut(s) 1104
TaqI TCGA 1 cut(s) 985
TatI WGTACW 1 cut(s) 490
TauI GCSGC 2 cut(s) 1030, 1196
TfiI GAWTC 5 cut(s) 336, 662, 690, 871, 1295
Tru1I TTAA 8 cut(s) 90, 399, 711, 791, 929, 1016, 1146, 1349
Tru9I TTAA 8 cut(s) 90, 399, 711, 791, 929, 1016, 1146, 1349
TseI GCWGC 2 cut(s) 638, 1049
TspDTI ATGAA 4 cut(s) 347, 675, 810, 1287
TspGWI ACGGA 1 cut(s) 1174
Tth111I GACNNNGTC 1 cut(s) 252
Vha464I CTTAAG 1 cut(s) 710
VpaK11BI GGWCC 3 cut(s) 51, 1288, 1419
XapI RAATTY 3 cut(s) 853, 1234, 1425
XceI RCATGY 3 cut(s) 84, 453, 1445
XcmI CCANNNNNNNNNTGG 1 cut(s) 1403
XmnI GAANNNNTTC 1 cut(s) 1182
XspI CTAG 1 cut(s) 300
Zsp2I ATGCAT 2 cut(s) 310, 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.