Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0001156

Physical Location & Seq

Genomic Coordinates Reverse (-)

5685668 .. 5686939

Gene Structure 1272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g05820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGGAAAAGATATTGTAAGAAAGTGCGGAGGGGTTCCCTTAGCTGTGAAAACCTTAGGGAGTCAACTTTACTCAAAGACTGATGAGCGTCAATGGAAATTGATTAGAGATTCTGAGATATGGGAATTAGAACGAGATGGAGCTGGTCACATTCTACCTGCTTTGGGACTGAGTTATACTCAATTGCCCTCTCATTTGAAGCTGTGCCTTGCCAGCTGTTCAATTCTTCCAAAGAATTACATTGAATTTAGTAGCATGGATTTGATCGAGAATTGGATGGCACATGGAATCCTTGAATCTCATGAACATGGGGATATGGAGTTGGAAGATGTTGGTGAGCTATATTTCAAAGAGTTATGGGACAGATCTTTCTTTCAAAATGTTAAGGAGTACGATTTCTTCTATCAATTTGATATGGATGATCTCATCAAGGACCTTGTACAATCAGTCGCACAAGGTGAGAGTTTGTTAGTAGACTCTGCAGGGACCAAAGGCATCTCTGAAAATGTTAGACATCTCTTATTTTTTGAAAGTGGCCAAAATGTTTCAACAACCTTGCAAAAGTTGAATAAAGTGCGGACTATAGCAGCAGAGAGATGTGAAAATATTGATGAATCCTTCCTCAGCACTTGCATTTCAAGATTCAAATATCTACGGGTGCTTAGGTTATTCATTTCACCTTGCGAATTGTTGCCGACTTCCATTGGTCCTTTGAAGCATTTGAGAAGCCTCGAATTGATTGAAAATGAAAGAATCACCGCACTACCCAATTCAATTTGTAAGCTGCAGAGCTTGCAAACTCTGGGTCTCGGTGGATGCGTGAATCTTGAAGAGTTGCCTAGAGACATGAGAAAGTTGATCAGCCTCAGATACCTTGTAATAACCACAAAACAATCAAGTTTTCCAGAGGATGGAGTGGGATGCTTGACATCACTTCGATCTCTTTATATTTGGGAGTGCAGTAATCTAACGTGTTTGCCGCGTGATACGAGTTACCTTGCGTCATTACGCACTCTAATCATAGGCAATTGCAAACAACTTGATTTGGTGATGGAAAACTATCAGGTAATTCCACTAAGGCTCCAAAAATTGTGGATTAAAGGAGTACCACGAATGGTCGCATTGCCTGAATGGTTTCAAGGAGCCGCAAACACACTACAAGTCTTGGTTATTGGAGATTGCCCTGATTTGGAGAGGAGATGCCAGCGCGACACAGGAGAAGATTGGCCAAAGATTTCTCATGTTCCAAATGTTTCTTTTGAAGGGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

424

Amino Acids

48.14

Weight (kDa)

5.54

Isoelectric Point (pI)

45.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_DRP	PF23559	75 - 147	9.1e-17	Disease resistance protein Winged helix domain
LRR_14	PF23598	170 - 391	1.7e-21	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001156)

Species	Orthologous Gene IDs
malus_domestica	MD09G1161800.v1.1 MD09G1161900.v1.1 MD12G1180400.v1.1 MD14G1068500.v1.1 MD14G1068900.v1.1 MD14G1069100.v1.1 MD14G1070400.v1.1 MD14G1072100.v1.1 MD14G1072300.v1.1 MD14G1072500.v1.1
prunus_persica	Prupe.7G033700_v2.0.a1 Prupe.7G060200_v2.0.a1 Prupe.7G060300_v2.0.a1 Prupe.7G062200_v2.0.a1 Prupe.7G062300_v2.0.a1 Prupe.7G062500_v2.0.a1 Prupe.7G062600_v2.0.a1 Prupe.7G062700_v2.0.a1 Prupe.7G062800_v2.0.a1 Prupe.7G062900_v2.0.a1 Prupe.7G063000_v2.0.a1 Prupe.7G063800_v2.0.a1
pyrus_communis	pycom12g17000 pycom12g17010 pycom14g05670 pycom14g05690 pycom14g05730 pycom14g05810 pycom14g05820 pycom14g05860 pycom14g05900 pycom14g05920 pycom14g05950 pycom14g05960 pycom14g06200
rosa_chinensis	RchiOBHm_Chr3g0482391 RchiOBHm_Chr3g0482451 RchiOBHm_Chr5g0007861
rosa_multiflora	Rmu_sc0002969.1_g000005 Rmu_sc0013521.1_g000002 Rmu_sc0013521.1_g000003 Rmu_sc0021597.1_g000001
rosa_roxburghii	Rroxscaffold_6G00399360
rosa_rugosa	Rorug03G0193500 Rorug03G0195900 Rorug03G0196100
rosa_samantha	Rh1BG172200 Rh2CG271300 Rh3BG282500 Rh3BG282900 Rh3BG283100 Rh3CG279500 Rh3DG275300 Rh3DG275700
rosa_wichuraiana	Rw3G022230 Rw3G022260 Rw3G022280 Rw3G022310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	166
AccB7I	CCANNNNNTGG	1 cut(s)	911
AccI	GTMKAC	1 cut(s)	474
AccII	CGCG	2 cut(s)	982, 1209
AciI	CCGC	5 cut(s)	27, 577, 759, 980, 1146
AcoI	YGGCCR	2 cut(s)	535, 1226
AcsI	RAATTY	1 cut(s)	245
AdeI	CACNNNGTG	1 cut(s)	458
AfaI	GTAC	3 cut(s)	392, 441, 1107
AfiI	CCNNNNNNNGG	3 cut(s)	164, 911, 1189
AflIII	ACRYGT	1 cut(s)	971
AluBI	AGCT	7 cut(s)	44, 143, 202, 216, 340, 784, 792
AluI	AGCT	7 cut(s)	44, 143, 202, 216, 340, 784, 792
Alw26I	GTCTC	2 cut(s)	812, 837
AoxI	GGCC	2 cut(s)	535, 1226
ApeKI	GCWGC	2 cut(s)	587, 784
ApoI	RAATTY	1 cut(s)	245
ArsI	GACNNNNNNTTYG	2 cut(s)	790, 822
Asp700I	GAANNNNTTC	1 cut(s)	1134
AspLEI	GCGC	1 cut(s)	1209
AspS9I	GGNCC	3 cut(s)	433, 486, 707
AsuHPI	GGTGA	5 cut(s)	347, 470, 669, 748, 1060
AvaII	GGWCC	3 cut(s)	433, 486, 707
AxyI	CCTNAGG	1 cut(s)	55
BalI	TGGCCA	2 cut(s)	537, 1228
BarI	GAAGNNNNNNTAC	2 cut(s)	383, 415
BbvCI	CCTCAGC	1 cut(s)	623
BbvI	GCAGC	2 cut(s)	599, 771
BccI	CCATC	4 cut(s)	131, 271, 905, 1045
BclI	TGATCA	1 cut(s)	858
BcoDI	GTCTC	2 cut(s)	812, 837
BfaI	CTAG	1 cut(s)	840
BfmI	CTRYAG	3 cut(s)	480, 582, 785
BfuAI	ACCTGC	1 cut(s)	166
BglII	AGATCT	1 cut(s)	365
BisI	GCNGC	4 cut(s)	588, 785, 980, 1146
BlsI	GCNGC	4 cut(s)	589, 786, 981, 1147
Bme18I	GGWCC	3 cut(s)	433, 486, 707
BmgT120I	GGNCC	3 cut(s)	433, 486, 707
BmiI	GGNNCC	4 cut(s)	36, 487, 1082, 1144
BmsI	GCATC	4 cut(s)	504, 806, 911, 1190
BplI	GAGNNNNNCTC	2 cut(s)	163, 195
Bpu10I	CCTNAGC	3 cut(s)	40, 623, 662
BsaI	GGTCTC	1 cut(s)	812
BsaXI	ACNNNNNCTCC	2 cut(s)	1065, 1095
Bsc4I	CCNNNNNNNGG	3 cut(s)	164, 911, 1189
Bse21I	CCTNAGG	1 cut(s)	55
Bse3DI	GCAATG	1 cut(s)	1121
BseGI	GGATG	5 cut(s)	282, 424, 821, 916, 926
BseLI	CCNNNNNNNGG	3 cut(s)	164, 911, 1189
BseMI	GCAATG	1 cut(s)	1121
BseMII	CTCAG	4 cut(s)	105, 161, 637, 880
BseRI	GAGGAG	1 cut(s)	1210
BseXI	GCAGC	2 cut(s)	599, 771
BsgI	GTGCAG	1 cut(s)	979
Bsh1236I	CGCG	2 cut(s)	982, 1209
BshFI	GGCC	2 cut(s)	537, 1228
BslFI	GGGAC	3 cut(s)	180, 374, 499
BslI	CCNNNNNNNGG	3 cut(s)	164, 911, 1189
BsmAI	GTCTC	2 cut(s)	812, 837
BsmFI	GGGAC	3 cut(s)	180, 374, 499
BsnI	GGCC	2 cut(s)	537, 1228
Bso31I	GGTCTC	1 cut(s)	812
Bsp1407I	TGTACA	1 cut(s)	439
Bsp143I	GATC	5 cut(s)	264, 365, 421, 858, 938
BspACI	CCGC	5 cut(s)	27, 577, 759, 980, 1146
BspANI	GGCC	2 cut(s)	537, 1228
BspCNI	CTCAG	4 cut(s)	106, 162, 636, 879
BspFNI	CGCG	2 cut(s)	982, 1209
BspHI	TCATGA	1 cut(s)	301
BspLI	GGNNCC	4 cut(s)	36, 487, 1082, 1144
BspMAI	CTGCAG	2 cut(s)	484, 789
BspMI	ACCTGC	1 cut(s)	166
BspTNI	GGTCTC	1 cut(s)	812
BsrDI	GCAATG	1 cut(s)	1121
BsrGI	TGTACA	1 cut(s)	439
BssMI	GATC	5 cut(s)	264, 365, 421, 858, 938
Bst6I	CTCTTC	1 cut(s)	825
BstAPI	GCANNNNNTGC	1 cut(s)	793
BstAUI	TGTACA	1 cut(s)	439
BstC8I	GCNNGC	3 cut(s)	214, 794, 1205
BstDEI	CTNAG	8 cut(s)	40, 55, 114, 170, 623, 662, 866, 1076
BstF5I	GGATG	5 cut(s)	282, 424, 821, 916, 926
BstFNI	CGCG	2 cut(s)	982, 1209
BstHHI	GCGC	1 cut(s)	1209
BstKTI	GATC	5 cut(s)	267, 368, 424, 861, 941
BstMAI	GTCTC	2 cut(s)	812, 837
BstMBI	GATC	5 cut(s)	264, 365, 421, 858, 938
BstMWI	GCNNNNNNNGC	2 cut(s)	213, 793
BstSFI	CTRYAG	3 cut(s)	480, 582, 785
BstUI	CGCG	2 cut(s)	982, 1209
BstV1I	GCAGC	2 cut(s)	599, 771
BstX2I	RGATCY	1 cut(s)	365
BstYI	RGATCY	1 cut(s)	365
Bsu36I	CCTNAGG	1 cut(s)	55
BsuRI	GGCC	2 cut(s)	537, 1228
BtsCI	GGATG	5 cut(s)	282, 424, 821, 916, 926
BveI	ACCTGC	1 cut(s)	166
Cac8I	GCNNGC	3 cut(s)	214, 794, 1205
CciI	TCATGA	1 cut(s)	301
CfoI	GCGC	1 cut(s)	1209
Cfr13I	GGNCC	3 cut(s)	433, 486, 707
CseI	GACGC	2 cut(s)	77, 990
Csp6I	GTAC	3 cut(s)	391, 440, 1106
CspCI	CAANNNNNGTGG	2 cut(s)	1073, 1108
CviAII	CATG	6 cut(s)	256, 284, 302, 308, 847, 1241
CviQI	GTAC	3 cut(s)	391, 440, 1106
DdeI	CTNAG	8 cut(s)	40, 55, 114, 170, 623, 662, 866, 1076
DpnI	GATC	5 cut(s)	266, 367, 423, 860, 940
DpnII	GATC	5 cut(s)	264, 365, 421, 858, 938
DraIII	CACNNNGTG	1 cut(s)	458
EaeI	YGGCCR	2 cut(s)	535, 1226
Eam1104I	CTCTTC	1 cut(s)	825
EarI	CTCTTC	1 cut(s)	825
Eco31I	GGTCTC	1 cut(s)	812
Eco47I	GGWCC	3 cut(s)	433, 486, 707
Eco81I	CCTNAGG	1 cut(s)	55
EcoO109I	RGGNCCY	1 cut(s)	433
FaeI	CATG	6 cut(s)	259, 287, 305, 311, 850, 1244
FaqI	GGGAC	3 cut(s)	180, 374, 499
FatI	CATG	6 cut(s)	255, 283, 301, 307, 846, 1240
FbaI	TGATCA	1 cut(s)	858
FblI	GTMKAC	1 cut(s)	474
Fnu4HI	GCNGC	4 cut(s)	588, 785, 980, 1146
FokI	GGATG	5 cut(s)	289, 431, 828, 923, 933
Fsp4HI	GCNGC	4 cut(s)	588, 785, 980, 1146
FspBI	CTAG	1 cut(s)	840
GlaI	GCGC	1 cut(s)	1208
GluI	GCNGC	4 cut(s)	588, 785, 980, 1146
HaeIII	GGCC	2 cut(s)	537, 1228
HgaI	GACGC	2 cut(s)	77, 990
HhaI	GCGC	1 cut(s)	1209
Hin1II	CATG	6 cut(s)	259, 287, 305, 311, 850, 1244
Hin6I	GCGC	1 cut(s)	1207
HinP1I	GCGC	1 cut(s)	1207
HincII	GTYRAC	1 cut(s)	65
HindII	GTYRAC	1 cut(s)	65
HinfI	GANTC	9 cut(s)	61, 110, 288, 296, 476, 614, 642, 753, 823
HphI	GGTGA	5 cut(s)	347, 470, 669, 748, 1060
Hpy166II	GTNNAC	2 cut(s)	65, 475
Hpy188I	TCNGA	3 cut(s)	115, 502, 869
Hpy188III	TCNNGA	5 cut(s)	268, 302, 639, 827, 905
Hpy8I	GTNNAC	2 cut(s)	65, 475
HpyAV	CCTTC	2 cut(s)	628, 1256
HpyCH4IV	ACGT	1 cut(s)	971
HpyCH4V	TGCA	7 cut(s)	482, 559, 633, 787, 796, 960, 1032
HpyF10VI	GCNNNNNNNGC	2 cut(s)	213, 793
HpyF3I	CTNAG	8 cut(s)	40, 55, 114, 170, 623, 662, 866, 1076
HpySE526I	ACGT	1 cut(s)	971
Hsp92II	CATG	6 cut(s)	259, 287, 305, 311, 850, 1244
HspAI	GCGC	1 cut(s)	1207
Ksp22I	TGATCA	1 cut(s)	858
Kzo9I	GATC	5 cut(s)	264, 365, 421, 858, 938
LmnI	GCTCC	3 cut(s)	140, 1086, 1142
Lsp1109I	GCAGC	2 cut(s)	599, 771
LweI	GCATC	4 cut(s)	504, 806, 911, 1190
MaeI	CTAG	1 cut(s)	840
MaeII	ACGT	1 cut(s)	971
MaeIII	GTNAC	2 cut(s)	146, 992
MalI	GATC	5 cut(s)	266, 367, 423, 860, 940
MboI	GATC	5 cut(s)	264, 365, 421, 858, 938
MboII	GAAGA	5 cut(s)	218, 338, 391, 842, 1232
MfeI	CAATTG	2 cut(s)	182, 1027
MflI	RGATCY	1 cut(s)	365
MlsI	TGGCCA	2 cut(s)	537, 1228
MluNI	TGGCCA	2 cut(s)	537, 1228
MlyI	GAGTC	2 cut(s)	70, 470
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	7 cut(s)	23, 199, 632, 740, 875, 901, 1188
Mox20I	TGGCCA	2 cut(s)	537, 1228
MroXI	GAANNNNTTC	1 cut(s)	1134
MscI	TGGCCA	2 cut(s)	537, 1228
MseI	TTAA	2 cut(s)	384, 1098
MslI	CAYNNNNRTG	1 cut(s)	306
Msp20I	TGGCCA	2 cut(s)	537, 1228
MspA1I	CMGCKG	1 cut(s)	216
MunI	CAATTG	2 cut(s)	182, 1027
MvnI	CGCG	2 cut(s)	982, 1209
MwoI	GCNNNNNNNGC	2 cut(s)	213, 793
NdeII	GATC	5 cut(s)	264, 365, 421, 858, 938
NlaIII	CATG	6 cut(s)	259, 287, 305, 311, 850, 1244
NlaIV	GGNNCC	4 cut(s)	36, 487, 1082, 1144
NmuCI	GTSAC	1 cut(s)	146
PagI	TCATGA	1 cut(s)	301
PcsI	WCGNNNNNNNCGW	1 cut(s)	816
PdmI	GAANNNNTTC	1 cut(s)	1134
PfeI	GAWTC	7 cut(s)	110, 288, 296, 614, 642, 753, 823
PflMI	CCANNNNNTGG	1 cut(s)	911
PkrI	GCNGC	4 cut(s)	589, 786, 981, 1147
PleI	GAGTC	2 cut(s)	69, 470
PpsI	GAGTC	2 cut(s)	69, 470
PpuMI	RGGWCCY	1 cut(s)	433
Psp5II	RGGWCCY	1 cut(s)	433
PspN4I	GGNNCC	4 cut(s)	36, 487, 1082, 1144
PspPI	GGNCC	3 cut(s)	433, 486, 707
PspPPI	RGGWCCY	1 cut(s)	433
PstI	CTGCAG	2 cut(s)	484, 789
PsuI	RGATCY	1 cut(s)	365
PvuII	CAGCTG	1 cut(s)	216
RsaI	GTAC	3 cut(s)	392, 441, 1107
RsaNI	GTAC	3 cut(s)	391, 440, 1106
RseI	CAYNNNNRTG	1 cut(s)	306
SaqAI	TTAA	2 cut(s)	384, 1098
SatI	GCNGC	4 cut(s)	588, 785, 980, 1146
Sau3AI	GATC	5 cut(s)	264, 365, 421, 858, 938
Sau96I	GGNCC	3 cut(s)	433, 486, 707
SchI	GAGTC	2 cut(s)	70, 470
SfaNI	GCATC	4 cut(s)	504, 806, 911, 1190
SfcI	CTRYAG	3 cut(s)	480, 582, 785
SinI	GGWCC	3 cut(s)	433, 486, 707
SmiMI	CAYNNNNRTG	1 cut(s)	306
SsiI	CCGC	5 cut(s)	27, 577, 759, 980, 1146
SspI	AATATT	1 cut(s)	607
SspMI	CTAG	1 cut(s)	840
TaiI	ACGT	1 cut(s)	974
TaqI	TCGA	3 cut(s)	267, 732, 937
TatI	WGTACW	1 cut(s)	439
TauI	GCSGC	2 cut(s)	982, 1148
TfiI	GAWTC	7 cut(s)	110, 288, 296, 614, 642, 753, 823
Tru1I	TTAA	2 cut(s)	384, 1098
Tru9I	TTAA	2 cut(s)	384, 1098
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	2 cut(s)	587, 784
Tsp45I	GTSAC	1 cut(s)	146
TspDTI	ATGAA	4 cut(s)	318, 627, 661, 762
Van91I	CCANNNNNTGG	1 cut(s)	911
VpaK11BI	GGWCC	3 cut(s)	433, 486, 707
XapI	RAATTY	1 cut(s)	245
XmiI	GTMKAC	1 cut(s)	474
XmnI	GAANNNNTTC	1 cut(s)	1134
XspI	CTAG	1 cut(s)	840

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.