Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001156

Physical Location & Seq

Genomic Coordinates Reverse (-)

27437890 .. 27438255

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG172200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGTTAGTACCATGGACAGTGCCAAGTGGTTTAAGCATCTCCACTCTTGAAATCTTGAAGATTAGCTGTTGTTCTGTGCTTCAGTACTTTAGTGGGCTACCTACTTCTCTTAAAGTTTTGAAGATAAGGTGCTGCTCTGCGCTGAAGTGCTTGCCACACAGTGGACTGCCCGCTTCTCTTAAGATTTTGGAGATTTGGTCTTGCTCAGCGCTGCAGTGCTTGCCAGAAAGTGGATTACCCAGTTCTCTTTGTGAACTACATATCATTGGATGTCCTTTGCTTGAAAAACTGTGCCAAAGAGAGAGGGGGGAATATTGGCCTAAGATTGCTCACATCCCCCACATAACGATCACTAGCAGGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

13.31

Weight (kDa)

8.36

Isoelectric Point (pI)

50.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001156)

Species	Orthologous Gene IDs
malus_domestica	MD09G1161800.v1.1 MD09G1161900.v1.1 MD12G1180400.v1.1 MD14G1068500.v1.1 MD14G1068900.v1.1 MD14G1069100.v1.1 MD14G1070400.v1.1 MD14G1072100.v1.1 MD14G1072300.v1.1 MD14G1072500.v1.1
prunus_persica	Prupe.7G033700_v2.0.a1 Prupe.7G060200_v2.0.a1 Prupe.7G060300_v2.0.a1 Prupe.7G062200_v2.0.a1 Prupe.7G062300_v2.0.a1 Prupe.7G062500_v2.0.a1 Prupe.7G062600_v2.0.a1 Prupe.7G062700_v2.0.a1 Prupe.7G062800_v2.0.a1 Prupe.7G062900_v2.0.a1 Prupe.7G063000_v2.0.a1 Prupe.7G063800_v2.0.a1
pyrus_communis	pycom12g17000 pycom12g17010 pycom14g05670 pycom14g05690 pycom14g05730 pycom14g05810 pycom14g05820 pycom14g05860 pycom14g05900 pycom14g05920 pycom14g05950 pycom14g05960 pycom14g06200
rosa_chinensis	RchiOBHm_Chr3g0482391 RchiOBHm_Chr3g0482451 RchiOBHm_Chr5g0007861
rosa_multiflora	Rmu_sc0002969.1_g000005 Rmu_sc0013521.1_g000002 Rmu_sc0013521.1_g000003 Rmu_sc0021597.1_g000001
rosa_roxburghii	Rroxscaffold_6G00399360
rosa_rugosa	Rorug03G0193500 Rorug03G0195900 Rorug03G0196100
rosa_samantha	Rh1BG172200 Rh2CG271300 Rh3BG282500 Rh3BG282900 Rh3BG283100 Rh3CG279500 Rh3DG275300 Rh3DG275700
rosa_wichuraiana	Rw3G022230 Rw3G022260 Rw3G022280 Rw3G022310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	161, 230
AciI	CCGC	1 cut(s)	171
AcuI	CTGAAG	2 cut(s)	65, 164
AdeI	CACNNNGTG	1 cut(s)	161
AfaI	GTAC	2 cut(s)	9, 86
AfeI	AGCGCT	1 cut(s)	210
AfiI	CCNNNNNNNGG	2 cut(s)	161, 230
AflII	CTTAAG	1 cut(s)	179
AgsI	TTSAA	4 cut(s)	50, 58, 121, 284
AluBI	AGCT	1 cut(s)	66
AluI	AGCT	1 cut(s)	66
Aor51HI	AGCGCT	1 cut(s)	210
AoxI	GGCC	1 cut(s)	317
ApeKI	GCWGC	2 cut(s)	132, 211
AspLEI	GCGC	2 cut(s)	142, 211
BbvI	GCAGC	2 cut(s)	119, 198
BfaI	CTAG	1 cut(s)	354
BfmI	CTRYAG	1 cut(s)	212
BfoI	RGCGCY	1 cut(s)	212
BfrI	CTTAAG	1 cut(s)	179
BisI	GCNGC	2 cut(s)	133, 212
BlpI	GCTNAGC	1 cut(s)	205
BlsI	GCNGC	2 cut(s)	134, 213
BmcAI	AGTACT	1 cut(s)	86
BmrI	ACTGGG	1 cut(s)	234
BmsI	GCATC	1 cut(s)	45
BmuI	ACTGGG	1 cut(s)	234
Bpu1102I	GCTNAGC	1 cut(s)	205
BsaJI	CCNNGG	1 cut(s)	11
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bsc4I	CCNNNNNNNGG	2 cut(s)	161, 230
Bse1I	ACTGG	1 cut(s)	240
BseDI	CCNNGG	1 cut(s)	11
BseGI	GGATG	2 cut(s)	275, 333
BseLI	CCNNNNNNNGG	2 cut(s)	161, 230
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	240
BseXI	GCAGC	2 cut(s)	119, 198
BshFI	GGCC	1 cut(s)	319
BslI	CCNNNNNNNGG	2 cut(s)	161, 230
BsnI	GGCC	1 cut(s)	319
Bsp143I	GATC	1 cut(s)	348
Bsp1720I	GCTNAGC	1 cut(s)	205
Bsp19I	CCATGG	1 cut(s)	11
BspACI	CCGC	1 cut(s)	171
BspANI	GGCC	1 cut(s)	319
BspCNI	CTCAG	1 cut(s)	218
BspMAI	CTGCAG	1 cut(s)	216
BspTI	CTTAAG	1 cut(s)	179
BsrI	ACTGG	1 cut(s)	240
BssECI	CCNNGG	1 cut(s)	11
BssMI	GATC	1 cut(s)	348
BssT1I	CCWWGG	1 cut(s)	11
Bst4CI	ACNGT	3 cut(s)	19, 161, 291
BstAFI	CTTAAG	1 cut(s)	179
BstAPI	GCANNNNNTGC	1 cut(s)	220
BstC8I	GCNNGC	3 cut(s)	152, 171, 221
BstDEI	CTNAG	2 cut(s)	205, 321
BstDSI	CCRYGG	1 cut(s)	11
BstF5I	GGATG	2 cut(s)	275, 333
BstH2I	RGCGCY	1 cut(s)	212
BstHHI	GCGC	2 cut(s)	142, 211
BstKTI	GATC	1 cut(s)	351
BstMBI	GATC	1 cut(s)	348
BstMWI	GCNNNNNNNGC	1 cut(s)	220
BstSFI	CTRYAG	1 cut(s)	212
BstV1I	GCAGC	2 cut(s)	119, 198
BsuRI	GGCC	1 cut(s)	319
BtgI	CCRYGG	1 cut(s)	11
BtsCI	GGATG	2 cut(s)	275, 333
BtsI	GCAGTG	1 cut(s)	221
BtsIMutI	CAGTG	3 cut(s)	24, 166, 221
Cac8I	GCNNGC	3 cut(s)	152, 171, 221
CfoI	GCGC	2 cut(s)	142, 211
Csp6I	GTAC	2 cut(s)	8, 85
CviAII	CATG	1 cut(s)	12
CviJI	RGCY	3 cut(s)	66, 97, 319
CviKI_1	RGCY	3 cut(s)	66, 97, 319
CviQI	GTAC	2 cut(s)	8, 85
DdeI	CTNAG	2 cut(s)	205, 321
DpnI	GATC	1 cut(s)	350
DpnII	GATC	1 cut(s)	348
DraIII	CACNNNGTG	1 cut(s)	161
Eco130I	CCWWGG	1 cut(s)	11
Eco47III	AGCGCT	1 cut(s)	210
Eco57I	CTGAAG	2 cut(s)	65, 164
EcoT14I	CCWWGG	1 cut(s)	11
ErhI	CCWWGG	1 cut(s)	11
FaeI	CATG	1 cut(s)	15
FaiI	YATR	3 cut(s)	13, 261, 344
FatI	CATG	1 cut(s)	11
FauI	CCCGC	1 cut(s)	178
Fnu4HI	GCNGC	2 cut(s)	133, 212
FokI	GGATG	2 cut(s)	282, 320
Fsp4HI	GCNGC	2 cut(s)	133, 212
FspBI	CTAG	1 cut(s)	354
GlaI	GCGC	2 cut(s)	141, 210
GluI	GCNGC	2 cut(s)	133, 212
HaeII	RGCGCY	1 cut(s)	212
HaeIII	GGCC	1 cut(s)	319
HhaI	GCGC	2 cut(s)	142, 211
Hin1II	CATG	1 cut(s)	15
Hin6I	GCGC	2 cut(s)	140, 209
HinP1I	GCGC	2 cut(s)	140, 209
Hpy166II	GTNNAC	2 cut(s)	164, 254
Hpy188III	TCNNGA	2 cut(s)	47, 55
Hpy8I	GTNNAC	2 cut(s)	164, 254
HpyCH4III	ACNGT	3 cut(s)	19, 161, 291
HpyCH4V	TGCA	1 cut(s)	214
HpyF10VI	GCNNNNNNNGC	1 cut(s)	220
HpyF3I	CTNAG	2 cut(s)	205, 321
Hsp92II	CATG	1 cut(s)	15
HspAI	GCGC	2 cut(s)	140, 209
Kzo9I	GATC	1 cut(s)	348
LpnPI	CCDG	3 cut(s)	237, 253, 343
Lsp1109I	GCAGC	2 cut(s)	119, 198
LweI	GCATC	1 cut(s)	45
MaeI	CTAG	1 cut(s)	354
MalI	GATC	1 cut(s)	350
MboI	GATC	1 cut(s)	348
MboII	GAAGA	2 cut(s)	70, 133
MnlI	CCTC	1 cut(s)	297
MseI	TTAA	4 cut(s)	32, 111, 180, 364
MspCI	CTTAAG	1 cut(s)	179
MwoI	GCNNNNNNNGC	1 cut(s)	220
NcoI	CCATGG	1 cut(s)	11
NdeII	GATC	1 cut(s)	348
NlaIII	CATG	1 cut(s)	15
PflMI	CCANNNNNTGG	2 cut(s)	161, 230
PkrI	GCNGC	2 cut(s)	134, 213
PstI	CTGCAG	1 cut(s)	216
RsaI	GTAC	2 cut(s)	9, 86
RsaNI	GTAC	2 cut(s)	8, 85
SaqAI	TTAA	4 cut(s)	32, 111, 180, 364
SatI	GCNGC	2 cut(s)	133, 212
Sau3AI	GATC	1 cut(s)	348
ScaI	AGTACT	1 cut(s)	86
SetI	ASST	3 cut(s)	68, 103, 131
SfaNI	GCATC	1 cut(s)	45
SfcI	CTRYAG	1 cut(s)	212
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
SsiI	CCGC	1 cut(s)	171
SspI	AATATT	1 cut(s)	314
SspMI	CTAG	1 cut(s)	354
StyI	CCWWGG	1 cut(s)	11
TaaI	ACNGT	3 cut(s)	19, 161, 291
TatI	WGTACW	1 cut(s)	84
Tru1I	TTAA	4 cut(s)	32, 111, 180, 364
Tru9I	TTAA	4 cut(s)	32, 111, 180, 364
TscAI	CASTG	3 cut(s)	24, 166, 221
TseI	GCWGC	2 cut(s)	132, 211
TspRI	CASTG	3 cut(s)	24, 166, 221
Van91I	CCANNNNNTGG	2 cut(s)	161, 230
Vha464I	CTTAAG	1 cut(s)	179
XspI	CTAG	1 cut(s)	354
ZrmI	AGTACT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.