MD14G1072100.v1.1

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Forward (+)
7997186 .. 7999676
2491 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1072100.v1.1.491

Sequence Viewer

Length: 2397 bp
ATGGATGACCTTGCATTTTCGTTGGCAAACAGACTCATTGAAAAGCTCATCTCCATTGCTTCTGAGGAGATTTGCTTGGCGTGGGGCGTTAAAGCGAATGTGCAGAAGCTTGGAAGCACCATGTCGACCATCAAAGACGTCCTCTTGGATGCCGAAGAGAAGCAAGCACATAACAGTGAGCTACGCAGTTGGCTACAACAACTTAAAGATGTGTTCCTTGATGCGGAGGATCTGTTGGACGAGTTTGAGTGCGAAGCTTTGCGAAGGCAAGTGGTTCATGGCAGTGGCACAAATAGAAAGGTACGCCATTTCTTTTCCCGCTCTAATCCAGTTGCATTCCGCTTGCGAGTAGGTCATGGAATTAAGAAGATAAGAGAAAGGTTACATGAGCTTAAAGACGATAAGAATTTTGCTGATCTTCGCACTGTTCATTATCACCCTCATCACGGTGATCATGGGAGGGAGAATAGGAATACGACCCACTCCTTTGTCCGTGCTTCGGAGGTTATTGGTAGAGAAACAGAAAAAAATAAGGTTGTTGATCTTCTAATGGTACAAGGCAATGATCATCAAAGTGAGGATAATGGGAATGTATCTGTTATTCCGATAGTGGGATTTGGAGGTTTAGGGAAGACCACACTTGCGAAGTTGGTGTACAATGATGAGAGAGTCGTTGGGAGTTTTGAATTAAGAATGTGGCAGTCTGTGACAGTGGACTTTGATGTTACTAGATTGACAAGAGAGATCCTCGGCTCTGCATTAGGTACGAAGATCAGTGAAGGGTCGTCTCTGGATCAGTTACAAGAACAACTACGAGACGCTTTAAAGGATAAGAAATTTCTACTTGTCTTGGATGATGTGTGGAACGAAGATTGTATCAAATGGAGCGAGTTGAGAGATTTATTGATAGAGGGGGCCAAGGTGGGAACTAAGATTTTGGTGACGACACGGAATATCTCAGTTGCTTCAATCATGGGGACAGTTGGAAACATAAATTTAGACATTCTCTCTTTTGAGGATTGTTTGTCTTTGTTTGTAAAGTGTGCATTTAAAGAAGGACAAGAAAGACATCATCCAAGCCTTTATGAAATGGGAAAAGATATTGTAAGAAAGTGCGGAGGGGTTCCCTTAGCTGTGAAAACCTTAGGGAGTCAACTTTACTCAAAGACTGATGACCGTCAATGGAGATTGATTAGAGATTCTGAGATATGGGAACTAGAACGAGATGGAGCTGGTCACATTCTACCTGCTTTGAGAGTGAGTTATACTCAATTGCCCTCTCATTTGAAACAGTGTCTTGCTTCTTGTTCAATTCTTTCAAAGAATTACATTGAATTTGATAGCAGGGAAGTGATCAATCATTGGATGGCACATGGAATCCTTGAATCTCGTGATCATGGGAATATGGAGTTGGAAGATGTTGGTGAGCTATATTTCAACGAGTTATGGGAGAGATCTTTCTTTCAAAATGTTAATGATCACATTTTCTTCTATAATTTTGATATGCATGATCTCATCCACGACCTTGTACAGTTAGTCACACAAGGTGAGAGTTTTACAGTAGACTCTGCATGCACCAAAGGCATCCCTGAAAATGTTAGGCATCTTACAATTTTGGAAATTGGCCAAAATGTTTCAACAGCCTTGCAAAAGTTGAACAAAGTGCGAGTGGAAGTGTTGCCAAATTCCATTGGTTCTTTGAAGCATTTGAGAAGCCTGGACTTCTATCAAAGTGAAGGAATCACCGAACTACCCAATTCATTTTGTGAGTTGCAGAGCTTGCAAAGTCTGAGTCTCGGTGGATGTGTGAATCTTGAAGTGTTGCCTAGAGACATGAGAAAGTTGATCAGCCTTAGATACCTTGAATTAACCACAAAACAATCAAGTTTTCCAGAGAATGGAGTGGGATGCTTGACATCACTTCGATATCTTTGTATTCAGGATTGTAGTTATCTAACGTGTTTGCCGCATGATACGAGTTATCTTGCGTCATTATGCACTCTGACCATACTTAATTGTAAACAACTTGATTTGGTGATGGAAAACTATCAAGTAATTCCACTAAGGCTCAAAAAATTGGGGATTGTAGGATTCCCACGAATGGTGGCATTGCCTGAATGGTTTCAAGGAGCCACAAACACACTACAAGTCTTGGTTATTGGGGATTGTGAGAACTTGGAGGCATTACCTGGGTGGTTGACGAGTTTCACATCGCTTAGAATGGTTGGCCTCAAATCATGTTCCAAACTGTTGTCTTTGCCAGAGAAGATGCATCGCCTCACTGCCTTAACAACACTTAGAATCAGAAAGTGTCCTGATCTGGAGAGGAGATGCCAGCGCGACACAGGAGAAGATTGGCAAAAGATTTCTCATGTTCCAAATGTTGATTGTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

799

Amino Acids

90.63

Weight (kDa)

6.01

Isoelectric Point (pI)

43.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 10 - 98 3.7e-25 Rx N-terminal domain
NB-ARC PF00931 195 - 352 1e-29 NB-ARC domain
WHD_DRP PF23559 444 - 510 3e-18 Disease resistance protein Winged helix domain
LRR_14 PF23598 551 - 720 3.1e-17 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 141
Acc36I ACCTGC 1 cut(s) 1255
AccB7I CCANNNNNTGG 1 cut(s) 1898
AccBSI CCGCTC 1 cut(s) 321
AccI GTMKAC 2 cut(s) 125, 1563
AccII CGCG 1 cut(s) 2340
AciI CCGC 5 cut(s) 224, 319, 340, 1116, 1967
AclWI GGATC 3 cut(s) 237, 739, 801
AcoI YGGCCR 1 cut(s) 1624
AcsI RAATTY 5 cut(s) 406, 836, 994, 1334, 1684
AcyI GRCGYC 1 cut(s) 138
AdeI CACNNNGTG 1 cut(s) 1547
AfaI GTAC 5 cut(s) 303, 555, 656, 766, 1530
AfiI CCNNNNNNNGG 6 cut(s) 223, 446, 499, 611, 1898, 2101
AflIII ACRYGT 1 cut(s) 1958
AjnI CCWGG 2 cut(s) 1716, 2188
AjuI GAANNNNNNNTTGG 2 cut(s) 1394, 1426
AluBI AGCT 9 cut(s) 46, 109, 181, 257, 391, 1133, 1232, 1429, 1779
AluI AGCT 9 cut(s) 46, 109, 181, 257, 391, 1133, 1232, 1429, 1779
Alw26I GTCTC 4 cut(s) 792, 810, 1799, 1824
AlwI GGATC 3 cut(s) 237, 739, 801
AoxI GGCC 3 cut(s) 915, 1624, 2227
ApoI RAATTY 5 cut(s) 406, 836, 994, 1334, 1684
ArsI GACNNNNNNTTYG 2 cut(s) 1777, 1809
Asp700I GAANNNNTTC 1 cut(s) 2121
AspLEI GCGC 1 cut(s) 2340
AspS9I GGNCC 1 cut(s) 915
AsuHPI GGTGA 7 cut(s) 428, 461, 952, 1436, 1559, 1735, 2047
AxyI CCTNAGG 1 cut(s) 1144
BalI TGGCCA 1 cut(s) 1626
BarI GAAGNNNNNNTAC 2 cut(s) 638, 670
BauI CACGAG 1 cut(s) 1389
BbsI GAAGAC 1 cut(s) 638
BccI CCATC 4 cut(s) 137, 1220, 1360, 2032
BciT130I CCWGG 2 cut(s) 1718, 2190
BclI TGATCA 6 cut(s) 451, 565, 1353, 1393, 1477, 1845
BcoDI GTCTC 4 cut(s) 792, 810, 1799, 1824
BfaI CTAG 3 cut(s) 729, 1217, 1827
BfuAI ACCTGC 1 cut(s) 1255
BglII AGATCT 1 cut(s) 1454
BisI GCNGC 1 cut(s) 1967
BlsI GCNGC 1 cut(s) 1968
Bme1390I CCNGG 2 cut(s) 1718, 2190
BmgT120I GGNCC 1 cut(s) 915
BmiI GGNNCC 3 cut(s) 916, 1125, 2131
BmrFI CCNGG 2 cut(s) 1718, 2190
BmsI GCATC 8 cut(s) 139, 211, 1593, 1612, 1898, 2259, 2281, 2321
BpiI GAAGAC 1 cut(s) 638
BplI GAGNNNNNCTC 4 cut(s) 732, 764, 1252, 1284
BpmI CTGGAG 1 cut(s) 2342
Bpu10I CCTNAGC 1 cut(s) 1129
BsaHI GRCGYC 1 cut(s) 138
BsaJI CCNNGG 3 cut(s) 748, 918, 2189
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bsc4I CCNNNNNNNGG 6 cut(s) 223, 446, 499, 611, 1898, 2101
Bse1I ACTGG 1 cut(s) 329
Bse21I CCTNAGG 1 cut(s) 1144
Bse3DI GCAATG 3 cut(s) 54, 568, 2108
BseBI CCWGG 2 cut(s) 1718, 2190
BseDI CCNNGG 3 cut(s) 748, 918, 2189
BseGI GGATG 9 cut(s) 10, 154, 859, 1072, 1371, 1515, 1584, 1808, 1913
BseLI CCNNNNNNNGG 6 cut(s) 223, 446, 499, 611, 1898, 2101
BseMI GCAATG 3 cut(s) 54, 568, 2108
BseMII CTCAG 4 cut(s) 54, 972, 1194, 1781
BseNI ACTGG 1 cut(s) 329
BseRI GAGGAG 2 cut(s) 80, 2341
BsgI GTGCAG 1 cut(s) 122
Bsh1236I CGCG 1 cut(s) 2340
BshFI GGCC 3 cut(s) 917, 1626, 2229
BslFI GGGAC 1 cut(s) 991
BslI CCNNNNNNNGG 6 cut(s) 223, 446, 499, 611, 1898, 2101
BsmAI GTCTC 4 cut(s) 792, 810, 1799, 1824
BsmBI CGTCTC 2 cut(s) 792, 810
BsmFI GGGAC 1 cut(s) 991
BsmI GAATGC 1 cut(s) 335
BsnI GGCC 3 cut(s) 917, 1626, 2229
Bsp1407I TGTACA 2 cut(s) 654, 1528
BspACI CCGC 5 cut(s) 224, 319, 340, 1116, 1967
BspANI GGCC 3 cut(s) 917, 1626, 2229
BspCNI CTCAG 4 cut(s) 55, 971, 1195, 1782
BspFNI CGCG 1 cut(s) 2340
BspLI GGNNCC 3 cut(s) 916, 1125, 2131
BspMI ACCTGC 1 cut(s) 1255
BspPI GGATC 3 cut(s) 237, 739, 801
BsrBI CCGCTC 1 cut(s) 321
BsrDI GCAATG 3 cut(s) 54, 568, 2108
BsrGI TGTACA 2 cut(s) 654, 1528
BsrI ACTGG 1 cut(s) 329
BssECI CCNNGG 3 cut(s) 748, 918, 2189
BssNI GRCGYC 1 cut(s) 138
BssSI CACGAG 1 cut(s) 1389
BssT1I CCWWGG 1 cut(s) 918
Bst2BI CACGAG 1 cut(s) 1389
Bst2UI CCWGG 2 cut(s) 1718, 2190
Bst6I CTCTTC 1 cut(s) 150
BstACI GRCGYC 1 cut(s) 138
BstAPI GCANNNNNTGC 1 cut(s) 1780
BstAUI TGTACA 2 cut(s) 654, 1528
BstC8I GCNNGC 5 cut(s) 165, 344, 1573, 1781, 2336
BstF5I GGATG 9 cut(s) 10, 154, 859, 1072, 1371, 1515, 1584, 1808, 1913
BstFNI CGCG 1 cut(s) 2340
BstHHI GCGC 1 cut(s) 2340
BstMAI GTCTC 4 cut(s) 792, 810, 1799, 1824
BstMWI GCNNNNNNNGC 2 cut(s) 1581, 1780
BstNI CCWGG 2 cut(s) 1718, 2190
BstNSI RCATGY 1 cut(s) 1575
BstSCI CCNGG 2 cut(s) 1716, 2188
BstUI CGCG 1 cut(s) 2340
BstV2I GAAGAC 1 cut(s) 638
BstX2I RGATCY 3 cut(s) 229, 744, 1454
BstYI RGATCY 3 cut(s) 229, 744, 1454
Bsu36I CCTNAGG 1 cut(s) 1144
BsuRI GGCC 3 cut(s) 917, 1626, 2229
BtgZI GCGATG 2 cut(s) 2196, 2258
BtsCI GGATG 9 cut(s) 10, 154, 859, 1072, 1371, 1515, 1584, 1808, 1913
BtsI GCAGTG 2 cut(s) 289, 2280
BtsIMutI CAGTG 7 cut(s) 181, 289, 423, 717, 781, 1298, 2280
BveI ACCTGC 1 cut(s) 1255
Cac8I GCNNGC 5 cut(s) 165, 344, 1573, 1781, 2336
CfoI GCGC 1 cut(s) 2340
Cfr13I GGNCC 1 cut(s) 915
CseI GACGC 2 cut(s) 827, 1977
Csp6I GTAC 5 cut(s) 302, 554, 655, 765, 1529
CviQI GTAC 5 cut(s) 302, 554, 655, 765, 1529
DraI TTTAAA 2 cut(s) 825, 1051
DraIII CACNNNGTG 1 cut(s) 1547
EaeI YGGCCR 1 cut(s) 1624
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Eco130I CCWWGG 1 cut(s) 918
Eco32I GATATC 1 cut(s) 1928
Eco81I CCTNAGG 1 cut(s) 1144
EcoRII CCWGG 2 cut(s) 1716, 2188
EcoRV GATATC 1 cut(s) 1928
EcoT14I CCWWGG 1 cut(s) 918
EcoT22I ATGCAT 2 cut(s) 1509, 2274
ErhI CCWWGG 1 cut(s) 918
Esp3I CGTCTC 2 cut(s) 792, 810
FaqI GGGAC 1 cut(s) 991
FauI CCCGC 1 cut(s) 326
FbaI TGATCA 6 cut(s) 451, 565, 1353, 1393, 1477, 1845
FblI GTMKAC 2 cut(s) 125, 1563
Fnu4HI GCNGC 1 cut(s) 1967
FokI GGATG 9 cut(s) 17, 161, 866, 1059, 1378, 1502, 1571, 1815, 1920
Fsp4HI GCNGC 1 cut(s) 1967
FspBI CTAG 3 cut(s) 729, 1217, 1827
GlaI GCGC 1 cut(s) 2339
GluI GCNGC 1 cut(s) 1967
GsuI CTGGAG 1 cut(s) 2342
HaeIII GGCC 3 cut(s) 917, 1626, 2229
HgaI GACGC 2 cut(s) 827, 1977
HhaI GCGC 1 cut(s) 2340
Hin1I GRCGYC 1 cut(s) 138
Hin6I GCGC 1 cut(s) 2338
HinP1I GCGC 1 cut(s) 2338
HincII GTYRAC 3 cut(s) 126, 1154, 2199
HindII GTYRAC 3 cut(s) 126, 1154, 2199
HindIII AAGCTT 2 cut(s) 107, 255
HphI GGTGA 7 cut(s) 428, 461, 952, 1436, 1559, 1735, 2047
Hpy166II GTNNAC 7 cut(s) 126, 655, 715, 1154, 1564, 2021, 2199
Hpy188I TCNGA 7 cut(s) 64, 502, 606, 1204, 1791, 2004, 2306
Hpy188III TCNNGA 7 cut(s) 791, 1391, 1814, 1892, 1940, 2315, 2321
Hpy8I GTNNAC 7 cut(s) 126, 655, 715, 1154, 1564, 2021, 2199
HpyAV CCTTC 4 cut(s) 258, 773, 1049, 1730
HpyCH4IV ACGT 2 cut(s) 138, 1958
HpyF10VI GCNNNNNNNGC 2 cut(s) 1581, 1780
HpySE526I ACGT 2 cut(s) 138, 1958
Hsp92I GRCGYC 1 cut(s) 138
HspAI GCGC 1 cut(s) 2338
Ksp22I TGATCA 6 cut(s) 451, 565, 1353, 1393, 1477, 1845
LmnI GCTCC 3 cut(s) 885, 1229, 2129
LweI GCATC 8 cut(s) 139, 211, 1593, 1612, 1898, 2259, 2281, 2321
MaeI CTAG 3 cut(s) 729, 1217, 1827
MaeII ACGT 2 cut(s) 138, 1958
MaeIII GTNAC 7 cut(s) 381, 706, 724, 798, 940, 1235, 1537
MbiI CCGCTC 1 cut(s) 321
MfeI CAATTG 1 cut(s) 1271
MflI RGATCY 3 cut(s) 229, 744, 1454
MlsI TGGCCA 1 cut(s) 1626
MluNI TGGCCA 1 cut(s) 1626
MlyI GAGTC 5 cut(s) 27, 678, 1159, 1559, 1801
MmeI TCCRAC 3 cut(s) 216, 964, 1392
Mox20I TGGCCA 1 cut(s) 1626
Mph1103I ATGCAT 2 cut(s) 1509, 2274
MroXI GAANNNNTTC 1 cut(s) 2121
MscI TGGCCA 1 cut(s) 1626
MslI CAYNNNNRTG 4 cut(s) 174, 282, 447, 573
Msp20I TGGCCA 1 cut(s) 1626
MspR9I CCNGG 2 cut(s) 1718, 2190
MunI CAATTG 1 cut(s) 1271
Mva1269I GAATGC 1 cut(s) 335
MvaI CCWGG 2 cut(s) 1718, 2190
MvnI CGCG 1 cut(s) 2340
MwoI GCNNNNNNNGC 2 cut(s) 1581, 1780
NlaIV GGNNCC 3 cut(s) 916, 1125, 2131
NmeAIII GCCGAG 1 cut(s) 729
NmuCI GTSAC 4 cut(s) 706, 940, 1235, 1537
NsiI ATGCAT 2 cut(s) 1509, 2274
NspI RCATGY 1 cut(s) 1575
PaeI GCATGC 1 cut(s) 1575
PctI GAATGC 1 cut(s) 335
PdmI GAANNNNTTC 1 cut(s) 2121
PfeI GAWTC 7 cut(s) 1199, 1377, 1385, 1740, 1810, 2091, 2301
PflMI CCANNNNNTGG 1 cut(s) 1898
PkrI GCNGC 1 cut(s) 1968
PleI GAGTC 5 cut(s) 27, 677, 1158, 1559, 1800
PpsI GAGTC 5 cut(s) 27, 677, 1158, 1559, 1800
Psp6I CCWGG 2 cut(s) 1716, 2188
PspGI CCWGG 2 cut(s) 1716, 2188
PspN4I GGNNCC 3 cut(s) 916, 1125, 2131
PspPI GGNCC 1 cut(s) 915
PsuI RGATCY 3 cut(s) 229, 744, 1454
RsaI GTAC 5 cut(s) 303, 555, 656, 766, 1530
RsaNI GTAC 5 cut(s) 302, 554, 655, 765, 1529
RseI CAYNNNNRTG 4 cut(s) 174, 282, 447, 573
SalI GTCGAC 1 cut(s) 124
SatI GCNGC 1 cut(s) 1967
Sau96I GGNCC 1 cut(s) 915
SchI GAGTC 5 cut(s) 27, 678, 1159, 1559, 1801
ScrFI CCNGG 2 cut(s) 1718, 2190
SfaNI GCATC 8 cut(s) 139, 211, 1593, 1612, 1898, 2259, 2281, 2321
SmiMI CAYNNNNRTG 4 cut(s) 174, 282, 447, 573
SphI GCATGC 1 cut(s) 1575
SsiI CCGC 5 cut(s) 224, 319, 340, 1116, 1967
SspMI CTAG 3 cut(s) 729, 1217, 1827
StyD4I CCNGG 2 cut(s) 1716, 2188
StyI CCWWGG 1 cut(s) 918
TaiI ACGT 2 cut(s) 141, 1961
TaqI TCGA 2 cut(s) 125, 1924
TatI WGTACW 2 cut(s) 654, 1528
TauI GCSGC 1 cut(s) 1969
TfiI GAWTC 7 cut(s) 1199, 1377, 1385, 1740, 1810, 2091, 2301
TscAI CASTG 7 cut(s) 181, 289, 430, 717, 781, 1298, 2287
TseFI GTSAC 4 cut(s) 706, 940, 1235, 1537
Tsp45I GTSAC 4 cut(s) 706, 940, 1235, 1537
TspDTI ATGAA 4 cut(s) 266, 419, 1101, 1749
TspGWI ACGGA 2 cut(s) 482, 964
TspRI CASTG 7 cut(s) 181, 289, 430, 717, 781, 1298, 2287
Van91I CCANNNNNTGG 1 cut(s) 1898
XapI RAATTY 5 cut(s) 406, 836, 994, 1334, 1684
XceI RCATGY 1 cut(s) 1575
XmiI GTMKAC 2 cut(s) 125, 1563
XmnI GAANNNNTTC 1 cut(s) 2121
XspI CTAG 3 cut(s) 729, 1217, 1827
ZraI GACGTC 1 cut(s) 139
Zsp2I ATGCAT 2 cut(s) 1509, 2274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.