pycom14g05950

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Reverse (-)
5785946 .. 5787442
1497 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g05950.1

Sequence Viewer

Length: 1497 bp
ATGGGGACAGTTGGAAACATAAATTTAGATGTTCTCTCTTTTGAGGATTGTTTGTCTTTGTTTGTAAAGTGTGCATTTAAAGAAGGACAAGAAGGACAGCATCCACGCCTTTATGAAATGGGAAAAGATATTGTAAGAAAGTGCGGAGGGGTTCCCTTAGCTGTGAAAACCTTAGGGAGTCAACTTTACTCAAAGACTGATGAGTGTCAATGGAAATTGATTAGAGATTCTGAGATATGGGAATTAGAACAAGAGGGAGCTGGTCAACTTCTACCTGCTTTGAGACTGAGCTATACACAATTGCCGTATCATTTGAAGCAGTGCCTTGCTTGCTGTTCAATTCTCCAGAAGAAATATGTTAAATTTGATAGTAGAGAATTGATAAATAATTGGATGGCACTTGGAGTTCTTGAATATCGTGATCATGCGAATATGGAGTTGCTTGCGGATGAGGAGTTGGAAGATGTTGGTGAGCTGTATTTCAAAGCGTTATGGGAGAGATCTTTCTTTCAAAATGTTAAGGATTACATTTTCTACTATAAATTTCAGATGCATGATCTCATCCATGACCTTGTACAATCAGTCACACAAGATGAGAGTTTTATGGTAGGCTCTGCAGGCACCAAAGGCCTCACTGGAAATGTTAGACATCTCTCAGTTTTGGAAGTTGGCCAAAATGTTTCAATGACCTTGCAAAAGATGAACAAAGTGCGGACTATAACAGCAAGGAGATGTGAAAATATTGATGAATCCTTCCTCCGCACTTGCATTTCAAGATTCAGATATCTGCGAGTGATTAAGTTAGCCAATGCATCTTTGGAATTGTTGCCGAGTTCCATTGGTTCTTTGAAGCATTTGAGAACCCTAAGCTTCTATGGAAATGAAGGAATCACCAAAGTACCCAATTCAATTTGTAAGTTGCAGAGCTTGAAAACTCTGAATCTCGGTGGATGTGTGAATCTTGAAGAGTTGCCTAGAGGCATGAGCAAGTTGATCAGCCTTAGATACCTTGATTTTACCACAAAGCAATCAAGTTTTCTAGATAATGGAGTGGGAGGCTTGAAGTCACTTCGATATCTTGTTATTATGCGGTGTAGTAATCTAACGTGTTTGCCGCGTGATACGAGTTATCTTGCGTCATTACACACTCTGACGATAGGTAATTGTAAACAACTTGATTTGGTGATGGAAAACTATCAAGTAATTCCACTAAAGCTCAAAAAATTGGGGATTAAAGGGGTACCACGAATGGTGGCATTGCCTGAATGGTTTCAAGGAGCCACAAACACACTACAAGACTTGGTCATTAGGAATTGTGAGAATTTGGAGGCATTACCTGGGTGGTTGATGAGTTTCACATCGCTTAGAAGGCTTATCCTCGTATCATGTCCCAAATTGTTGTCTTTGCCAGAGGAGATGCACCGCCTCACTGCCTTAACAGAAGTTAGGATCAAAAAGTGTCATGATTTGAAGAGGAGATGCCATCGCAACACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

499

Amino Acids

56.84

Weight (kDa)

8.86

Isoelectric Point (pI)

44.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 118 - 192 5.5e-15 Disease resistance protein Winged helix domain
LRR_14 PF23598 215 - 436 1.3e-21 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 283
Acc65I GGTACC 1 cut(s) 1240
AccB1I GGYRCC 2 cut(s) 620, 1240
AccII CGCG 1 cut(s) 1117
AciI CCGC 7 cut(s) 144, 446, 712, 760, 1090, 1115, 1423
AclWI GGATC 1 cut(s) 1457
AcoI YGGCCR 1 cut(s) 670
AcsI RAATTY 4 cut(s) 22, 362, 542, 1321
AcvI CACGTG 1 cut(s) 1494
AfaI GTAC 3 cut(s) 576, 900, 1242
AflIII ACRYGT 2 cut(s) 1106, 1491
AjnI CCWGG 1 cut(s) 1336
AluBI AGCT 7 cut(s) 161, 260, 291, 475, 870, 927, 1216
AluI AGCT 7 cut(s) 161, 260, 291, 475, 870, 927, 1216
Alw26I GTCTC 1 cut(s) 277
AlwI GGATC 1 cut(s) 1457
AoxI GGCC 2 cut(s) 628, 670
ApoI RAATTY 4 cut(s) 22, 362, 542, 1321
Asp700I GAANNNNTTC 1 cut(s) 1269
Asp718I GGTACC 1 cut(s) 1240
AsuHPI GGTGA 3 cut(s) 482, 883, 1195
AxyI CCTNAGG 1 cut(s) 172
BaeI ACNNNNGTAYC 2 cut(s) 882, 915
BalI TGGCCA 1 cut(s) 672
BanI GGYRCC 2 cut(s) 620, 1240
BbrPI CACGTG 1 cut(s) 1494
BccI CCATC 3 cut(s) 388, 1180, 1491
BceAI ACGGC 1 cut(s) 289
BciT130I CCWGG 1 cut(s) 1338
BclI TGATCA 2 cut(s) 421, 993
BcoDI GTCTC 1 cut(s) 277
BfaI CTAG 2 cut(s) 975, 1040
BfmI CTRYAG 1 cut(s) 615
BfuAI ACCTGC 1 cut(s) 283
BglII AGATCT 1 cut(s) 500
BisI GCNGC 1 cut(s) 1115
BlsI GCNGC 1 cut(s) 1116
Bme1390I CCNGG 1 cut(s) 1338
BmiI GGNNCC 4 cut(s) 153, 622, 1242, 1279
BmrFI CCNGG 1 cut(s) 1338
BmsI GCATC 5 cut(s) 109, 540, 821, 1407, 1469
BpmI CTGGAG 1 cut(s) 329
Bpu10I CCTNAGC 2 cut(s) 157, 866
BsaAI YACGTR 1 cut(s) 1494
BsaJI CCNNGG 1 cut(s) 1337
Bse1I ACTGG 1 cut(s) 640
Bse21I CCTNAGG 1 cut(s) 172
Bse3DI GCAATG 1 cut(s) 1256
BseBI CCWGG 1 cut(s) 1338
BseDI CCNNGG 1 cut(s) 1337
BseGI GGATG 5 cut(s) 100, 399, 454, 561, 956
BseMI GCAATG 1 cut(s) 1256
BseMII CTCAG 3 cut(s) 222, 278, 669
BseNI ACTGG 1 cut(s) 640
BseRI GAGGAG 3 cut(s) 467, 1427, 1489
Bsh1236I CGCG 1 cut(s) 1117
BshFI GGCC 2 cut(s) 630, 672
BshNI GGYRCC 2 cut(s) 620, 1240
BslFI GGGAC 2 cut(s) 19, 1374
BsmAI GTCTC 1 cut(s) 277
BsmFI GGGAC 2 cut(s) 19, 1374
BsnI GGCC 2 cut(s) 630, 672
Bsp1407I TGTACA 1 cut(s) 574
Bsp143I GATC 5 cut(s) 421, 500, 556, 993, 1449
BspACI CCGC 7 cut(s) 144, 446, 712, 760, 1090, 1115, 1423
BspANI GGCC 2 cut(s) 630, 672
BspCNI CTCAG 3 cut(s) 223, 279, 668
BspFNI CGCG 1 cut(s) 1117
BspHI TCATGA 1 cut(s) 1462
BspLI GGNNCC 4 cut(s) 153, 622, 1242, 1279
BspMAI CTGCAG 1 cut(s) 619
BspMI ACCTGC 1 cut(s) 283
BspPI GGATC 1 cut(s) 1457
BspT107I GGYRCC 2 cut(s) 620, 1240
BsrDI GCAATG 1 cut(s) 1256
BsrGI TGTACA 1 cut(s) 574
BsrI ACTGG 1 cut(s) 640
BssECI CCNNGG 1 cut(s) 1337
BssMI GATC 5 cut(s) 421, 500, 556, 993, 1449
Bst2UI CCWGG 1 cut(s) 1338
Bst4CI ACNGT 1 cut(s) 10
Bst6I CTCTTC 2 cut(s) 960, 1466
BstAUI TGTACA 1 cut(s) 574
BstBAI YACGTR 1 cut(s) 1494
BstC8I GCNNGC 3 cut(s) 331, 444, 619
BstDEI CTNAG 8 cut(s) 157, 172, 231, 287, 655, 866, 1001, 1364
BstF5I GGATG 5 cut(s) 100, 399, 454, 561, 956
BstFNI CGCG 1 cut(s) 1117
BstKTI GATC 5 cut(s) 424, 503, 559, 996, 1452
BstMAI GTCTC 1 cut(s) 277
BstMBI GATC 5 cut(s) 421, 500, 556, 993, 1449
BstMWI GCNNNNNNNGC 4 cut(s) 330, 618, 627, 1369
BstNI CCWGG 1 cut(s) 1338
BstSCI CCNGG 1 cut(s) 1336
BstSFI CTRYAG 1 cut(s) 615
BstUI CGCG 1 cut(s) 1117
BstX2I RGATCY 1 cut(s) 500
BstYI RGATCY 1 cut(s) 500
Bsu36I CCTNAGG 1 cut(s) 172
BsuRI GGCC 2 cut(s) 630, 672
BtgZI GCGATG 2 cut(s) 1344, 1469
BtsCI GGATG 5 cut(s) 100, 399, 454, 561, 956
BtsI GCAGTG 2 cut(s) 326, 1428
BtsIMutI CAGTG 3 cut(s) 326, 633, 1428
BveI ACCTGC 1 cut(s) 283
Cac8I GCNNGC 3 cut(s) 331, 444, 619
CciI TCATGA 1 cut(s) 1462
CseI GACGC 1 cut(s) 1125
Csp6I GTAC 3 cut(s) 575, 899, 1241
CviAII CATG 6 cut(s) 425, 554, 566, 982, 1386, 1463
CviQI GTAC 3 cut(s) 575, 899, 1241
DdeI CTNAG 8 cut(s) 157, 172, 231, 287, 655, 866, 1001, 1364
DpnI GATC 5 cut(s) 423, 502, 558, 995, 1451
DpnII GATC 5 cut(s) 421, 500, 556, 993, 1449
DraI TTTAAA 1 cut(s) 79
EaeI YGGCCR 1 cut(s) 670
Eam1104I CTCTTC 2 cut(s) 960, 1466
EarI CTCTTC 2 cut(s) 960, 1466
Eco147I AGGCCT 1 cut(s) 630
Eco32I GATATC 2 cut(s) 785, 1076
Eco72I CACGTG 1 cut(s) 1494
Eco81I CCTNAGG 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 1336
EcoRV GATATC 2 cut(s) 785, 1076
EcoT22I ATGCAT 2 cut(s) 555, 814
FaeI CATG 6 cut(s) 428, 557, 569, 985, 1389, 1466
FaqI GGGAC 2 cut(s) 19, 1374
FatI CATG 6 cut(s) 424, 553, 565, 981, 1385, 1462
FbaI TGATCA 2 cut(s) 421, 993
Fnu4HI GCNGC 1 cut(s) 1115
FokI GGATG 5 cut(s) 87, 406, 461, 548, 963
Fsp4HI GCNGC 1 cut(s) 1115
FspBI CTAG 2 cut(s) 975, 1040
GluI GCNGC 1 cut(s) 1115
GsuI CTGGAG 1 cut(s) 329
HaeIII GGCC 2 cut(s) 630, 672
HgaI GACGC 1 cut(s) 1125
Hin1II CATG 6 cut(s) 428, 557, 569, 985, 1389, 1466
HincII GTYRAC 2 cut(s) 182, 266
HindII GTYRAC 2 cut(s) 182, 266
HindIII AAGCTT 1 cut(s) 868
HinfI GANTC 7 cut(s) 178, 227, 749, 777, 888, 940, 958
HphI GGTGA 3 cut(s) 482, 883, 1195
Hpy166II GTNNAC 3 cut(s) 182, 266, 1169
Hpy188I TCNGA 5 cut(s) 232, 549, 782, 939, 1152
Hpy188III TCNNGA 7 cut(s) 346, 410, 419, 774, 962, 1040, 1463
Hpy8I GTNNAC 3 cut(s) 182, 266, 1169
HpyAV CCTTC 5 cut(s) 77, 86, 763, 878, 1362
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4IV ACGT 2 cut(s) 1106, 1493
HpyCH4V TGCA 8 cut(s) 74, 553, 617, 694, 768, 812, 922, 1420
HpyF10VI GCNNNNNNNGC 4 cut(s) 330, 618, 627, 1369
HpyF3I CTNAG 8 cut(s) 157, 172, 231, 287, 655, 866, 1001, 1364
HpySE526I ACGT 2 cut(s) 1106, 1493
Hsp92II CATG 6 cut(s) 428, 557, 569, 985, 1389, 1466
KpnI GGTACC 1 cut(s) 1244
Ksp22I TGATCA 2 cut(s) 421, 993
Kzo9I GATC 5 cut(s) 421, 500, 556, 993, 1449
LmnI GCTCC 2 cut(s) 257, 1277
LpnPI CCDG 9 cut(s) 246, 288, 359, 603, 621, 1275, 1323, 1350, 1422
LweI GCATC 5 cut(s) 109, 540, 821, 1407, 1469
MaeI CTAG 2 cut(s) 975, 1040
MaeII ACGT 2 cut(s) 1106, 1493
MaeIII GTNAC 2 cut(s) 583, 1065
MalI GATC 5 cut(s) 423, 502, 558, 995, 1451
MboI GATC 5 cut(s) 421, 500, 556, 993, 1449
MboII GAAGA 4 cut(s) 361, 473, 977, 1483
MfeI CAATTG 1 cut(s) 299
MflI RGATCY 1 cut(s) 500
MlsI TGGCCA 1 cut(s) 672
MluNI TGGCCA 1 cut(s) 672
MlyI GAGTC 1 cut(s) 187
MmeI TCCRAC 1 cut(s) 438
Mox20I TGGCCA 1 cut(s) 672
Mph1103I ATGCAT 2 cut(s) 555, 814
MroXI GAANNNNTTC 1 cut(s) 1269
MscI TGGCCA 1 cut(s) 672
MseI TTAA 6 cut(s) 78, 360, 519, 798, 1233, 1436
Msp20I TGGCCA 1 cut(s) 672
MspR9I CCNGG 1 cut(s) 1338
MunI CAATTG 1 cut(s) 299
MvaI CCWGG 1 cut(s) 1338
MvnI CGCG 1 cut(s) 1117
MwoI GCNNNNNNNGC 4 cut(s) 330, 618, 627, 1369
NdeII GATC 5 cut(s) 421, 500, 556, 993, 1449
NlaIII CATG 6 cut(s) 428, 557, 569, 985, 1389, 1466
NlaIV GGNNCC 4 cut(s) 153, 622, 1242, 1279
NmeAIII GCCGAG 1 cut(s) 855
NmuCI GTSAC 2 cut(s) 583, 1065
NsiI ATGCAT 2 cut(s) 555, 814
PagI TCATGA 1 cut(s) 1462
PceI AGGCCT 1 cut(s) 630
PdmI GAANNNNTTC 1 cut(s) 1269
PfeI GAWTC 6 cut(s) 227, 749, 777, 888, 940, 958
PflFI GACNNNGTC 1 cut(s) 1301
PkrI GCNGC 1 cut(s) 1116
PleI GAGTC 1 cut(s) 186
PmaCI CACGTG 1 cut(s) 1494
PmlI CACGTG 1 cut(s) 1494
PpsI GAGTC 1 cut(s) 186
Ppu21I YACGTR 1 cut(s) 1494
Psp6I CCWGG 1 cut(s) 1336
PspCI CACGTG 1 cut(s) 1494
PspGI CCWGG 1 cut(s) 1336
PspN4I GGNNCC 4 cut(s) 153, 622, 1242, 1279
PstI CTGCAG 1 cut(s) 619
PsuI RGATCY 1 cut(s) 500
PsyI GACNNNGTC 1 cut(s) 1301
RsaI GTAC 3 cut(s) 576, 900, 1242
RsaNI GTAC 3 cut(s) 575, 899, 1241
SaqAI TTAA 6 cut(s) 78, 360, 519, 798, 1233, 1436
SatI GCNGC 1 cut(s) 1115
Sau3AI GATC 5 cut(s) 421, 500, 556, 993, 1449
SchI GAGTC 1 cut(s) 187
ScrFI CCNGG 1 cut(s) 1338
SfaNI GCATC 5 cut(s) 109, 540, 821, 1407, 1469
SfcI CTRYAG 1 cut(s) 615
SseBI AGGCCT 1 cut(s) 630
SsiI CCGC 7 cut(s) 144, 446, 712, 760, 1090, 1115, 1423
SspI AATATT 1 cut(s) 742
SspMI CTAG 2 cut(s) 975, 1040
StuI AGGCCT 1 cut(s) 630
StyD4I CCNGG 1 cut(s) 1336
TaaI ACNGT 1 cut(s) 10
TaiI ACGT 2 cut(s) 1109, 1496
TaqI TCGA 1 cut(s) 1072
TatI WGTACW 1 cut(s) 574
TauI GCSGC 1 cut(s) 1117
TfiI GAWTC 6 cut(s) 227, 749, 777, 888, 940, 958
Tru1I TTAA 6 cut(s) 78, 360, 519, 798, 1233, 1436
Tru9I TTAA 6 cut(s) 78, 360, 519, 798, 1233, 1436
TscAI CASTG 3 cut(s) 326, 640, 1435
TseFI GTSAC 2 cut(s) 583, 1065
Tsp45I GTSAC 2 cut(s) 583, 1065
TspDTI ATGAA 4 cut(s) 129, 716, 762, 897
TspRI CASTG 3 cut(s) 326, 640, 1435
Tth111I GACNNNGTC 1 cut(s) 1301
XapI RAATTY 4 cut(s) 22, 362, 542, 1321
XbaI TCTAGA 1 cut(s) 1039
XcmI CCANNNNNNNNNTGG 1 cut(s) 814
XmnI GAANNNNTTC 1 cut(s) 1269
XspI CTAG 2 cut(s) 975, 1040
Zsp2I ATGCAT 2 cut(s) 555, 814
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.