pycom14g05960

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Reverse (-)
5787654 .. 5788499
846 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g05960.1

Sequence Viewer

Length: 846 bp
ATGCTTTTATACCCATCATTATTCATACCATCTCCGTTCCCCCTGCACTCACCTCATCAAGAAAGAAAGAAAAAAAGAAAGAAGATGACCGTGCTTGCATTTCCGTTGGCAGCCAAACTCATTGAAAGGCTCAGCTCCATTGCTTCTGAGGAGATTTGCTTGGCGTGGGGCATTAAAGCGGATCTGCAAAAGCTTCGACGCACAATGTCCACAATCAAAGACGTGCTATTGGATGCCGAAGAGAAGCAAGCACGTAACAATGACCTACACAGTTGGCTACGAGAACTTAAAGATGTGTTCCTTGATGCGGAGGATCTGTTGGACGAGTTTGAGTGCGAAGCTTTGCGAAGGCAAGTGGTTCGTGGCAGTGGCACAACTAGAAAGGTACGCCGTTTCTTTTCCCGCTCTAATCCAGTTGCATTCCACTTGAGAGTAGGTCATGGAATTAAGGACATAAGAGAAAGGTTACATGAGCTTAAAGATGATAAGAATTTTGCTGATCTTCGCACTGTTGATCTCGGTGATCATGTGAGGGAGAATAGGAATACGACCCACTCCTTTGTCCGTGCTTCGGAGGTTATTGGTAGAGAAACAGAAAAAAATGAAGTTGTTGATCTTCTAACGGTACAAGGCGATGATCATCAAGGTGGGGATAACGGGAACGTATTTGTTATTCCTATAGTTGGATTACCAGGTTTAGGGAAGACCACGCTTGCCAAGTTGGTGTACAATAATGAGAAAGTTGTTGGGAGTTTTGAATTACGAATGTGGTTGAATGTGTCAGTGGACTTTAATATCACTAGATTGGCAAAAGAGATCGATCCATATAACTTGGCTCTGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

282

Amino Acids

32.18

Weight (kDa)

8.77

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 39 - 125 1.4e-24 Rx N-terminal domain
NB-ARC PF00931 219 - 273 8.9e-10 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 405
AciI CCGC 3 cut(s) 179, 308, 403
AclWI GGATC 3 cut(s) 189, 321, 815
AcsI RAATTY 1 cut(s) 490
AfaI GTAC 3 cut(s) 387, 627, 728
AfiI CCNNNNNNNGG 4 cut(s) 307, 571, 683, 698
AgsI TTSAA 3 cut(s) 125, 758, 775
AjiI CACGTC 1 cut(s) 223
AjnI CCWGG 1 cut(s) 691
AluBI AGCT 4 cut(s) 135, 193, 341, 475
AluI AGCT 4 cut(s) 135, 193, 341, 475
AlwI GGATC 3 cut(s) 189, 321, 815
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 1 cut(s) 490
AsuHPI GGTGA 2 cut(s) 42, 533
BbsI GAAGAC 1 cut(s) 710
BbvI GCAGC 1 cut(s) 122
BccI CCATC 2 cut(s) 22, 37
BceAI ACGGC 1 cut(s) 375
BcgI CGANNNNNNTGC 4 cut(s) 176, 210, 341, 375
BciT130I CCWGG 1 cut(s) 693
BclI TGATCA 2 cut(s) 523, 637
BfaI CTAG 2 cut(s) 378, 801
BfmI CTRYAG 1 cut(s) 678
BisI GCNGC 1 cut(s) 111
BlpI GCTNAGC 1 cut(s) 131
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 1 cut(s) 693
BmgBI CACGTC 1 cut(s) 223
BmrFI CCNGG 1 cut(s) 693
BmsI GCATC 2 cut(s) 223, 295
BpiI GAAGAC 1 cut(s) 710
Bpu1102I GCTNAGC 1 cut(s) 131
BpuEI CTTGAG 1 cut(s) 448
Bsa29I ATCGAT 1 cut(s) 819
BsaAI YACGTR 1 cut(s) 254
BsaBI GATNNNNATC 1 cut(s) 639
BsaXI ACNNNNNCTCC 2 cut(s) 302, 332
Bsc4I CCNNNNNNNGG 4 cut(s) 307, 571, 683, 698
Bse1I ACTGG 1 cut(s) 413
Bse3DI GCAATG 1 cut(s) 138
Bse8I GATNNNNATC 1 cut(s) 639
BseBI CCWGG 1 cut(s) 693
BseCI ATCGAT 1 cut(s) 819
BseGI GGATG 1 cut(s) 238
BseJI GATNNNNATC 1 cut(s) 639
BseLI CCNNNNNNNGG 4 cut(s) 307, 571, 683, 698
BseMI GCAATG 1 cut(s) 138
BseMII CTCAG 2 cut(s) 138, 145
BseNI ACTGG 1 cut(s) 413
BseRI GAGGAG 1 cut(s) 164
BseXI GCAGC 1 cut(s) 122
BsgI GTGCAG 1 cut(s) 29
BshVI ATCGAT 1 cut(s) 819
BslI CCNNNNNNNGG 4 cut(s) 307, 571, 683, 698
BsmI GAATGC 1 cut(s) 419
Bsp1407I TGTACA 1 cut(s) 726
Bsp143I GATC 9 cut(s) 181, 313, 499, 514, 523, 613, 637, 816, 820
Bsp1720I GCTNAGC 1 cut(s) 131
BspACI CCGC 3 cut(s) 179, 308, 403
BspCNI CTCAG 2 cut(s) 139, 144
BspDI ATCGAT 1 cut(s) 819
BspPI GGATC 3 cut(s) 189, 321, 815
BsrBI CCGCTC 1 cut(s) 405
BsrDI GCAATG 1 cut(s) 138
BsrGI TGTACA 1 cut(s) 726
BsrI ACTGG 1 cut(s) 413
BssMI GATC 9 cut(s) 181, 313, 499, 514, 523, 613, 637, 816, 820
Bst2UI CCWGG 1 cut(s) 693
Bst4CI ACNGT 4 cut(s) 91, 272, 511, 625
Bst6I CTCTTC 1 cut(s) 234
BstAUI TGTACA 1 cut(s) 726
BstBAI YACGTR 1 cut(s) 254
BstC8I GCNNGC 3 cut(s) 96, 249, 714
BstDEI CTNAG 2 cut(s) 131, 147
BstF5I GGATG 1 cut(s) 238
BstKTI GATC 9 cut(s) 184, 316, 502, 517, 526, 616, 640, 819, 823
BstMBI GATC 9 cut(s) 181, 313, 499, 514, 523, 613, 637, 816, 820
BstNI CCWGG 1 cut(s) 693
BstSCI CCNGG 1 cut(s) 691
BstSFI CTRYAG 1 cut(s) 678
BstV1I GCAGC 1 cut(s) 122
BstV2I GAAGAC 1 cut(s) 710
BstX2I RGATCY 2 cut(s) 181, 313
BstYI RGATCY 2 cut(s) 181, 313
Bsu15I ATCGAT 1 cut(s) 819
BsuTUI ATCGAT 1 cut(s) 819
BtgZI GCGATG 1 cut(s) 648
BtrI CACGTC 1 cut(s) 223
BtsCI GGATG 1 cut(s) 238
BtsI GCAGTG 1 cut(s) 373
BtsIMutI CAGTG 3 cut(s) 373, 507, 789
Cac8I GCNNGC 3 cut(s) 96, 249, 714
ClaI ATCGAT 1 cut(s) 819
CseI GACGC 1 cut(s) 207
CsiI ACCWGGT 1 cut(s) 691
Csp6I GTAC 3 cut(s) 386, 626, 727
CviAII CATG 3 cut(s) 440, 470, 527
CviJI RGCY 8 cut(s) 113, 130, 135, 193, 277, 341, 475, 836
CviKI_1 RGCY 8 cut(s) 113, 130, 135, 193, 277, 341, 475, 836
CviQI GTAC 3 cut(s) 386, 626, 727
DdeI CTNAG 2 cut(s) 131, 147
DpnI GATC 9 cut(s) 183, 315, 501, 516, 525, 615, 639, 818, 822
DpnII GATC 9 cut(s) 181, 313, 499, 514, 523, 613, 637, 816, 820
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
EcoRII CCWGG 1 cut(s) 691
FaeI CATG 3 cut(s) 443, 473, 530
FaiI YATR 9 cut(s) 10, 26, 441, 455, 471, 528, 680, 826, 828
FatI CATG 3 cut(s) 439, 469, 526
FauI CCCGC 1 cut(s) 410
FbaI TGATCA 2 cut(s) 523, 637
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 1 cut(s) 245
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 2 cut(s) 378, 801
GluI GCNGC 1 cut(s) 111
HgaI GACGC 1 cut(s) 207
Hin1II CATG 3 cut(s) 443, 473, 530
HindIII AAGCTT 2 cut(s) 191, 339
HphI GGTGA 2 cut(s) 42, 533
Hpy166II GTNNAC 3 cut(s) 210, 727, 787
Hpy188I TCNGA 2 cut(s) 148, 574
Hpy188III TCNNGA 1 cut(s) 59
Hpy8I GTNNAC 3 cut(s) 210, 727, 787
Hpy99I CGWCG 1 cut(s) 201
HpyAV CCTTC 1 cut(s) 342
HpyCH4III ACNGT 4 cut(s) 91, 272, 511, 625
HpyCH4IV ACGT 3 cut(s) 222, 253, 663
HpyCH4V TGCA 5 cut(s) 46, 98, 187, 419, 841
HpyF3I CTNAG 2 cut(s) 131, 147
HpySE526I ACGT 3 cut(s) 222, 253, 663
Hsp92II CATG 3 cut(s) 443, 473, 530
Ksp22I TGATCA 2 cut(s) 523, 637
Kzo9I GATC 9 cut(s) 181, 313, 499, 514, 523, 613, 637, 816, 820
LmnI GCTCC 1 cut(s) 140
LpnPI CCDG 4 cut(s) 56, 426, 678, 705
Lsp1109I GCAGC 1 cut(s) 122
LweI GCATC 2 cut(s) 223, 295
MabI ACCWGGT 1 cut(s) 691
MaeI CTAG 2 cut(s) 378, 801
MaeII ACGT 3 cut(s) 222, 253, 663
MaeIII GTNAC 2 cut(s) 254, 465
MalI GATC 9 cut(s) 183, 315, 501, 516, 525, 615, 639, 818, 822
MbiI CCGCTC 1 cut(s) 405
MboI GATC 9 cut(s) 181, 313, 499, 514, 523, 613, 637, 816, 820
MboII GAAGA 5 cut(s) 94, 251, 494, 608, 715
MflI RGATCY 2 cut(s) 181, 313
MluCI AATT 3 cut(s) 444, 490, 758
MmeI TCCRAC 2 cut(s) 300, 664
MnlI CCTC 5 cut(s) 63, 142, 304, 525, 568
MseI TTAA 5 cut(s) 174, 288, 447, 477, 792
MslI CAYNNNNRTG 1 cut(s) 645
MspR9I CCNGG 1 cut(s) 693
Mva1269I GAATGC 1 cut(s) 419
MvaI CCWGG 1 cut(s) 693
NdeII GATC 9 cut(s) 181, 313, 499, 514, 523, 613, 637, 816, 820
NlaIII CATG 3 cut(s) 443, 473, 530
PctI GAATGC 1 cut(s) 419
PkrI GCNGC 1 cut(s) 112
Ppu21I YACGTR 1 cut(s) 254
Psp6I CCWGG 1 cut(s) 691
PspGI CCWGG 1 cut(s) 691
PsuI RGATCY 2 cut(s) 181, 313
RsaI GTAC 3 cut(s) 387, 627, 728
RsaNI GTAC 3 cut(s) 386, 626, 727
RseI CAYNNNNRTG 1 cut(s) 645
SaqAI TTAA 5 cut(s) 174, 288, 447, 477, 792
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 9 cut(s) 181, 313, 499, 514, 523, 613, 637, 816, 820
ScrFI CCNGG 1 cut(s) 693
SexAI ACCWGGT 1 cut(s) 691
SfaNI GCATC 2 cut(s) 223, 295
SfcI CTRYAG 1 cut(s) 678
SmiMI CAYNNNNRTG 1 cut(s) 645
SmlI CTYRAG 1 cut(s) 427
SmoI CTYRAG 1 cut(s) 427
Sse9I AATT 3 cut(s) 444, 490, 758
SsiI CCGC 3 cut(s) 179, 308, 403
SspMI CTAG 2 cut(s) 378, 801
StyD4I CCNGG 1 cut(s) 691
TaaI ACNGT 4 cut(s) 91, 272, 511, 625
TaiI ACGT 3 cut(s) 225, 256, 666
TaqI TCGA 2 cut(s) 196, 819
TasI AATT 3 cut(s) 444, 490, 758
TatI WGTACW 1 cut(s) 726
Tru1I TTAA 5 cut(s) 174, 288, 447, 477, 792
Tru9I TTAA 5 cut(s) 174, 288, 447, 477, 792
TscAI CASTG 3 cut(s) 373, 514, 789
TseI GCWGC 1 cut(s) 110
TspDTI ATGAA 2 cut(s) 13, 618
TspGWI ACGGA 3 cut(s) 24, 93, 554
TspRI CASTG 3 cut(s) 373, 514, 789
XapI RAATTY 1 cut(s) 490
XspI CTAG 2 cut(s) 378, 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.