Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001156

Physical Location & Seq

Genomic Coordinates Forward (+)

10160264 .. 10161505

Gene Structure 1242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G062700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGCTGATCTTGCCTTTCCTTTGGCAACCAACCTCATTGAAAAGCTCGGGTCCTTTGCTTCTGAGCAGATCTGCTTGGCATGGGGCGTTAAAGCTGATCTGAAAAAGCTTCAGCGCACAATGTCCACCATCAAAGATGTCCTCTTGGATGCCGAACAGAAGCAAGCTCATAACCAGCAGATACGCAGTTGGCTAAGACAGCTTAAAGATGTATTTCTTGACGCCGAGGATTTGTTGGACGAGTTTGAGTGCGAAGCTTTGCGGAGGGAAGTGGTGGAAACATTTCGTGGCACAACTGGAAAGGTACGCCGTTTCTTCTCTCGTTCTAATCCAATTGCATTCCGTTTGAGAGTAGGTCATGAAATCAAGGAGATTAGAGAGAGATTAGATGAGCTCAAGTCCAATAAGGCTATATTTGATTCTCTCACTAGTATTGATCATCATGGAGGTGGTGTGAATGTGACCCACTCCTTCGTTCGTGCTTCAAAGGTTATTGGTAGAGAGTCTGAGAAGAAACAAATTATAAATCTCTTGATGGAACAAGGTGATGATAATCAAAGTGGGAATGGGAATGTCTCTGTTATTCCTATAGTGGGGATTGAAGGTTTAGGGAAGACCACGCTTGCCAAGTTGGTGTACGATGATGAAAGGGTCGTTGGGCATTTCGAAAAGAGGATGTGGGTGTCTGTTTCAGTGGACTTTGAAATTACTAGATTGATAAAGATGATTCTTAGTTCTGTATCAGATACAGAGATGAGTGATAAATTGAGTCTGGATCAGTTGCAAGGAAGGCTACGTCGTGCTTTAAAGGATAAGAAATTTTTGCTTGTTTTGGATGATGTTTGGAATGAGGATCCTATTAAATGGAATGAGTTAAGAGATTTATTGATAGAGGGAGCCAAGTCAGGAAGTAAGATTTTAGTGACGACGAGAAATACCTGGGTTGCTGAGATGATGGGTACCATTCCAACAAGCATTAATTTAGAATTTCTTTCTTTCGAGGATTGTTTGTCTTTGTTTGTAGAATGTGCTTTTAAAAAGGGACGTGATAAAGGGAAAATTCTGTGGTGCCTCAGCTGTATCGGTACAGCCAGTTATCCAAGGGTCAGTATTGCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

374

Amino Acids

42.24

Weight (kDa)

7.02

Isoelectric Point (pI)

38.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001156)

Species	Orthologous Gene IDs
malus_domestica	MD09G1161800.v1.1 MD09G1161900.v1.1 MD12G1180400.v1.1 MD14G1068500.v1.1 MD14G1068900.v1.1 MD14G1069100.v1.1 MD14G1070400.v1.1 MD14G1072100.v1.1 MD14G1072300.v1.1 MD14G1072500.v1.1
prunus_persica	Prupe.7G033700_v2.0.a1 Prupe.7G060200_v2.0.a1 Prupe.7G060300_v2.0.a1 Prupe.7G062200_v2.0.a1 Prupe.7G062300_v2.0.a1 Prupe.7G062500_v2.0.a1 Prupe.7G062600_v2.0.a1 Prupe.7G062700_v2.0.a1 Prupe.7G062800_v2.0.a1 Prupe.7G062900_v2.0.a1 Prupe.7G063000_v2.0.a1 Prupe.7G063800_v2.0.a1
pyrus_communis	pycom12g17000 pycom12g17010 pycom14g05670 pycom14g05690 pycom14g05730 pycom14g05810 pycom14g05820 pycom14g05860 pycom14g05900 pycom14g05920 pycom14g05950 pycom14g05960 pycom14g06200
rosa_chinensis	RchiOBHm_Chr3g0482391 RchiOBHm_Chr3g0482451 RchiOBHm_Chr5g0007861
rosa_multiflora	Rmu_sc0002969.1_g000005 Rmu_sc0013521.1_g000002 Rmu_sc0013521.1_g000003 Rmu_sc0021597.1_g000001
rosa_roxburghii	Rroxscaffold_6G00399360
rosa_rugosa	Rorug03G0193500 Rorug03G0195900 Rorug03G0196100
rosa_samantha	Rh1BG172200 Rh2CG271300 Rh3BG282500 Rh3BG282900 Rh3BG283100 Rh3CG279500 Rh3DG275300 Rh3DG275700
rosa_wichuraiana	Rw3G022230 Rw3G022260 Rw3G022280 Rw3G022310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	524
Acc65I	GGTACC	1 cut(s)	959
AccB1I	GGYRCC	2 cut(s)	959, 1068
AciI	CCGC	1 cut(s)	262
AclWI	GGATC	3 cut(s)	783, 848, 861
AcsI	RAATTY	3 cut(s)	818, 986, 1059
AcuI	CTGAAG	1 cut(s)	95
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	4 cut(s)	306, 638, 961, 1087
AfiI	CCNNNNNNNGG	1 cut(s)	593
AgsI	TTSAA	4 cut(s)	41, 486, 602, 704
AhlI	ACTAGT	1 cut(s)	428
AjiI	CACGTC	1 cut(s)	1046
AjnI	CCWGG	1 cut(s)	938
AjuI	GAANNNNNNNTTGG	2 cut(s)	639, 671
AluBI	AGCT	8 cut(s)	46, 95, 109, 167, 202, 257, 394, 1077
AluI	AGCT	8 cut(s)	46, 95, 109, 167, 202, 257, 394, 1077
Alw21I	GWGCWC	1 cut(s)	396
Alw26I	GTCTC	1 cut(s)	580
AlwI	GGATC	3 cut(s)	783, 848, 861
Ama87I	CYCGRG	1 cut(s)	47
ApoI	RAATTY	3 cut(s)	818, 986, 1059
AseI	ATTAAT	1 cut(s)	978
Asp700I	GAANNNNTTC	1 cut(s)	282
Asp718I	GGTACC	1 cut(s)	959
AspLEI	GCGC	1 cut(s)	117
AspS9I	GGNCC	1 cut(s)	51
AsuHPI	GGTGA	1 cut(s)	557
AsuII	TTCGAA	1 cut(s)	666
AvaI	CYCGRG	1 cut(s)	47
AvaII	GGWCC	1 cut(s)	51
BamHI	GGATCC	1 cut(s)	853
BanI	GGYRCC	2 cut(s)	959, 1068
BanII	GRGCYC	1 cut(s)	396
BbsI	GAAGAC	1 cut(s)	620
Bbv12I	GWGCWC	1 cut(s)	396
BbvCI	CCTCAGC	1 cut(s)	1073
BccI	CCATC	3 cut(s)	137, 529, 949
BceAI	ACGGC	1 cut(s)	294
BciT130I	CCWGG	1 cut(s)	940
BclI	TGATCA	1 cut(s)	436
BcoDI	GTCTC	1 cut(s)	580
BcuI	ACTAGT	1 cut(s)	428
BfaI	CTAG	2 cut(s)	429, 711
BfmI	CTRYAG	1 cut(s)	588
BglII	AGATCT	1 cut(s)	69
Bme1390I	CCNGG	1 cut(s)	940
Bme18I	GGWCC	1 cut(s)	51
BmeT110I	CYCGRG	1 cut(s)	47
BmgBI	CACGTC	1 cut(s)	1046
BmgT120I	GGNCC	1 cut(s)	51
BmiI	GGNNCC	5 cut(s)	52, 855, 898, 961, 1070
BmrFI	CCNGG	1 cut(s)	940
BmsI	GCATC	1 cut(s)	139
BpiI	GAAGAC	1 cut(s)	620
Bpu10I	CCTNAGC	1 cut(s)	1073
Bpu14I	TTCGAA	1 cut(s)	666
BpuEI	CTTGAG	1 cut(s)	380
BsaBI	GATNNNNATC	1 cut(s)	552
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	3 cut(s)	225, 939, 1100
BsaXI	ACNNNNNCTCC	2 cut(s)	438, 468
Bsc4I	CCNNNNNNNGG	1 cut(s)	593
Bse1I	ACTGG	2 cut(s)	301, 1092
Bse8I	GATNNNNATC	1 cut(s)	552
BseBI	CCWGG	1 cut(s)	940
BseDI	CCNNGG	3 cut(s)	225, 939, 1100
BseGI	GGATG	3 cut(s)	154, 681, 841
BseJI	GATNNNNATC	1 cut(s)	552
BseLI	CCNNNNNNNGG	1 cut(s)	593
BseMII	CTCAG	4 cut(s)	54, 498, 939, 1087
BseNI	ACTGG	2 cut(s)	301, 1092
BshNI	GGYRCC	2 cut(s)	959, 1068
BsiHKAI	GWGCWC	1 cut(s)	396
BsiHKCI	CYCGRG	1 cut(s)	47
BslFI	GGGAC	1 cut(s)	1056
BslI	CCNNNNNNNGG	1 cut(s)	593
BsmAI	GTCTC	1 cut(s)	580
BsmFI	GGGAC	1 cut(s)	1056
BsmI	GAATGC	1 cut(s)	338
BsoBI	CYCGRG	1 cut(s)	47
Bsp119I	TTCGAA	1 cut(s)	666
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp143I	GATC	6 cut(s)	7, 69, 97, 436, 775, 853
BspACI	CCGC	1 cut(s)	262
BspCNI	CTCAG	4 cut(s)	55, 499, 940, 1086
BspHI	TCATGA	1 cut(s)	358
BspLI	GGNNCC	5 cut(s)	52, 855, 898, 961, 1070
BspPI	GGATC	3 cut(s)	783, 848, 861
BspT104I	TTCGAA	1 cut(s)	666
BspT107I	GGYRCC	2 cut(s)	959, 1068
BsrI	ACTGG	2 cut(s)	301, 1092
BssECI	CCNNGG	3 cut(s)	225, 939, 1100
BssMI	GATC	6 cut(s)	7, 69, 97, 436, 775, 853
BssNI	GRCGYC	1 cut(s)	222
BssT1I	CCWWGG	1 cut(s)	1100
Bst2UI	CCWGG	1 cut(s)	940
BstACI	GRCGYC	1 cut(s)	222
BstBI	TTCGAA	1 cut(s)	666
BstC8I	GCNNGC	2 cut(s)	165, 624
BstDEI	CTNAG	6 cut(s)	63, 194, 507, 731, 948, 1073
BstF5I	GGATG	3 cut(s)	154, 681, 841
BstHHI	GCGC	1 cut(s)	117
BstKTI	GATC	6 cut(s)	10, 72, 100, 439, 778, 856
BstMAI	GTCTC	1 cut(s)	580
BstMBI	GATC	6 cut(s)	7, 69, 97, 436, 775, 853
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 199, 790
BstNI	CCWGG	1 cut(s)	940
BstSCI	CCNGG	1 cut(s)	938
BstSFI	CTRYAG	1 cut(s)	588
BstV2I	GAAGAC	1 cut(s)	620
BstX2I	RGATCY	2 cut(s)	69, 853
BstYI	RGATCY	2 cut(s)	69, 853
BtrI	CACGTC	1 cut(s)	1046
BtsCI	GGATG	3 cut(s)	154, 681, 841
BtsIMutI	CAGTG	1 cut(s)	699
Cac8I	GCNNGC	2 cut(s)	165, 624
CciI	TCATGA	1 cut(s)	358
CfoI	GCGC	1 cut(s)	117
Cfr13I	GGNCC	1 cut(s)	51
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	4 cut(s)	305, 637, 960, 1086
CviAII	CATG	3 cut(s)	81, 359, 443
CviQI	GTAC	4 cut(s)	305, 637, 960, 1086
DdeI	CTNAG	6 cut(s)	63, 194, 507, 731, 948, 1073
DpnI	GATC	6 cut(s)	9, 71, 99, 438, 777, 855
DpnII	GATC	6 cut(s)	7, 69, 97, 436, 775, 853
DraI	TTTAAA	2 cut(s)	807, 1036
Ecl136II	GAGCTC	1 cut(s)	394
Eco130I	CCWWGG	1 cut(s)	1100
Eco24I	GRGCYC	1 cut(s)	396
Eco47I	GGWCC	1 cut(s)	51
Eco53kI	GAGCTC	1 cut(s)	394
Eco57I	CTGAAG	1 cut(s)	95
Eco88I	CYCGRG	1 cut(s)	47
EcoICRI	GAGCTC	1 cut(s)	394
EcoO109I	RGGNCCY	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	938
EcoT14I	CCWWGG	1 cut(s)	1100
EcoT38I	GRGCYC	1 cut(s)	396
ErhI	CCWWGG	1 cut(s)	1100
FaeI	CATG	3 cut(s)	84, 362, 446
FaiI	YATR	7 cut(s)	82, 171, 360, 413, 444, 524, 590
FaqI	GGGAC	1 cut(s)	1056
FatI	CATG	3 cut(s)	80, 358, 442
FbaI	TGATCA	1 cut(s)	436
FokI	GGATG	3 cut(s)	161, 688, 848
FriOI	GRGCYC	1 cut(s)	396
FspBI	CTAG	2 cut(s)	429, 711
GlaI	GCGC	1 cut(s)	116
HgaI	GACGC	1 cut(s)	230
HhaI	GCGC	1 cut(s)	117
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	3 cut(s)	84, 362, 446
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HindIII	AAGCTT	2 cut(s)	107, 255
HinfI	GANTC	4 cut(s)	419, 503, 727, 769
HphI	GGTGA	1 cut(s)	557
Hpy166II	GTNNAC	3 cut(s)	126, 637, 697
Hpy188I	TCNGA	4 cut(s)	64, 102, 508, 745
Hpy188III	TCNNGA	5 cut(s)	218, 359, 532, 773, 906
Hpy8I	GTNNAC	3 cut(s)	126, 637, 697
Hpy99I	CGWCG	2 cut(s)	801, 931
HpyAV	CCTTC	3 cut(s)	481, 596, 783
HpyCH4IV	ACGT	2 cut(s)	796, 1045
HpyCH4V	TGCA	3 cut(s)	338, 784, 1115
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 199, 790
HpyF3I	CTNAG	6 cut(s)	63, 194, 507, 731, 948, 1073
HpySE526I	ACGT	2 cut(s)	796, 1045
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	3 cut(s)	84, 362, 446
HspAI	GCGC	1 cut(s)	115
KpnI	GGTACC	1 cut(s)	963
Ksp22I	TGATCA	1 cut(s)	436
Kzo9I	GATC	6 cut(s)	7, 69, 97, 436, 775, 853
LmnI	GCTCC	1 cut(s)	896
LpnPI	CCDG	7 cut(s)	188, 282, 758, 891, 925, 952, 1105
LweI	GCATC	1 cut(s)	139
MaeI	CTAG	2 cut(s)	429, 711
MaeII	ACGT	2 cut(s)	796, 1045
MaeIII	GTNAC	2 cut(s)	460, 922
MalI	GATC	6 cut(s)	9, 71, 99, 438, 777, 855
MboI	GATC	6 cut(s)	7, 69, 97, 436, 775, 853
MboII	GAAGA	3 cut(s)	307, 523, 625
MfeI	CAATTG	1 cut(s)	333
MflI	RGATCY	2 cut(s)	69, 853
MhlI	GDGCHC	1 cut(s)	396
MluCI	AATT	8 cut(s)	333, 519, 705, 764, 818, 979, 986, 1059
MlyI	GAGTC	2 cut(s)	512, 778
MmeI	TCCRAC	2 cut(s)	216, 992
MroXI	GAANNNNTTC	1 cut(s)	282
MseI	TTAA	8 cut(s)	90, 204, 806, 861, 875, 978, 1035, 1120
MslI	CAYNNNNRTG	1 cut(s)	447
MspA1I	CMGCKG	1 cut(s)	1077
MspR9I	CCNGG	1 cut(s)	940
MunI	CAATTG	1 cut(s)	333
Mva1269I	GAATGC	1 cut(s)	338
MvaI	CCWGG	1 cut(s)	940
MwoI	GCNNNNNNNGC	3 cut(s)	11, 199, 790
NdeII	GATC	6 cut(s)	7, 69, 97, 436, 775, 853
NlaIII	CATG	3 cut(s)	84, 362, 446
NlaIV	GGNNCC	5 cut(s)	52, 855, 898, 961, 1070
NmeAIII	GCCGAG	1 cut(s)	250
NmuCI	GTSAC	2 cut(s)	460, 922
NspV	TTCGAA	1 cut(s)	666
PagI	TCATGA	1 cut(s)	358
PctI	GAATGC	1 cut(s)	338
PdmI	GAANNNNTTC	1 cut(s)	282
PfeI	GAWTC	2 cut(s)	419, 727
PleI	GAGTC	2 cut(s)	511, 777
PpsI	GAGTC	2 cut(s)	511, 777
PpuMI	RGGWCCY	1 cut(s)	51
PshBI	ATTAAT	1 cut(s)	978
PsiI	TTATAA	1 cut(s)	524
Psp124BI	GAGCTC	1 cut(s)	396
Psp5II	RGGWCCY	1 cut(s)	51
Psp6I	CCWGG	1 cut(s)	938
PspGI	CCWGG	1 cut(s)	938
PspN4I	GGNNCC	5 cut(s)	52, 855, 898, 961, 1070
PspPI	GGNCC	1 cut(s)	51
PspPPI	RGGWCCY	1 cut(s)	51
PsuI	RGATCY	2 cut(s)	69, 853
PvuII	CAGCTG	1 cut(s)	1077
RsaI	GTAC	4 cut(s)	306, 638, 961, 1087
RsaNI	GTAC	4 cut(s)	305, 637, 960, 1086
RseI	CAYNNNNRTG	1 cut(s)	447
SacI	GAGCTC	1 cut(s)	396
SaqAI	TTAA	8 cut(s)	90, 204, 806, 861, 875, 978, 1035, 1120
Sau3AI	GATC	6 cut(s)	7, 69, 97, 436, 775, 853
Sau96I	GGNCC	1 cut(s)	51
SchI	GAGTC	2 cut(s)	512, 778
ScrFI	CCNGG	1 cut(s)	940
SduI	GDGCHC	1 cut(s)	396
SfaNI	GCATC	1 cut(s)	139
SfcI	CTRYAG	1 cut(s)	588
SfuI	TTCGAA	1 cut(s)	666
SinI	GGWCC	1 cut(s)	51
SmiMI	CAYNNNNRTG	1 cut(s)	447
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
SpeI	ACTAGT	1 cut(s)	428
Sse9I	AATT	8 cut(s)	333, 519, 705, 764, 818, 979, 986, 1059
SsiI	CCGC	1 cut(s)	262
SspMI	CTAG	2 cut(s)	429, 711
SstI	GAGCTC	1 cut(s)	396
StyD4I	CCNGG	1 cut(s)	938
StyI	CCWWGG	1 cut(s)	1100
TaiI	ACGT	2 cut(s)	799, 1048
TaqI	TCGA	2 cut(s)	666, 999
TasI	AATT	8 cut(s)	333, 519, 705, 764, 818, 979, 986, 1059
TfiI	GAWTC	2 cut(s)	419, 727
Tru1I	TTAA	8 cut(s)	90, 204, 806, 861, 875, 978, 1035, 1120
Tru9I	TTAA	8 cut(s)	90, 204, 806, 861, 875, 978, 1035, 1120
TscAI	CASTG	1 cut(s)	699
TseFI	GTSAC	2 cut(s)	460, 922
Tsp45I	GTSAC	2 cut(s)	460, 922
TspDTI	ATGAA	2 cut(s)	375, 660
TspGWI	ACGGA	1 cut(s)	332
TspRI	CASTG	1 cut(s)	699
VpaK11BI	GGWCC	1 cut(s)	51
VspI	ATTAAT	1 cut(s)	978
XapI	RAATTY	3 cut(s)	818, 986, 1059
XmnI	GAANNNNTTC	1 cut(s)	282
XspI	CTAG	2 cut(s)	429, 711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.