Prupe.7G062800_v2.0.a1

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0001156
Physical Location & Seq
Forward (+)
10169674 .. 10172087
2414 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G062800.1

Sequence Viewer

Length: 1209 bp
ATGGAGTTGGAAGACATCGGAGAGCTATATTTTAAAGATTTATGGGCGAGATCCTTTTTTCAAAACGTTATTGATTGTCATGCGTTCTACATATTTGATATGCATCATCTTATCCATGATCTTGTACAATCAATTGCACAAGGTGAGTGTTTTACAGTGAAGTCTGCAAACACCAAAAATATATCTGAAAATGTCAGACATTTGACATTTTTGGAAGCTGGCCAAAATATTTCAACAACCTTGCAAAAGTTGAACAAAGTGCGGACTATAGAAGCAGTCCAAATAGAGATTGATGAATCCTTCCCGTGCACTTGCTTCTCAAGATTCAAATATTTGCGAGTGGTTGAGTTACTAAGATGTTCATTACAAGTGTTGCCAAGTTCCATTGGTTCCCTGAAACATTTGAGATATCTGAACTTGTGTTATAATGAAGCAATAATGAAACTCCCCAATGCAATTTGTAGACTGCAGAGCTTGCAAACTCTAAATCTTGGTTATTGTGAGAATCTCCAAGAGTTACCGAGAGATATAAGCAAATTGATCAACCTCACATCACTGTTTTTAACCACAAAACAAACAAGTTTTACAAAGAATGGGGTGGGATGCTTGAAATCACTTCGATTCCTTAATATTGATGAGTGTAATCATTTAACTTCTTTGCCTTGTGAAAAAAGTTATCTTACTTCCTTAAGGACTCTGCTGATAGGAAATTGCGAACAACTGGATTTGGGGAACGTAATCTATCAAGGAACTCCACTGAGGCTCCAAAAATTGAGTATTATAAATTTATCTCGGATGGTGGCATTGCCTGAATGGTTTCAAGGAGCGGCTAATACCCTTCAAGTCTTGGTTATTGGCATGTGTGAGAATTTGGAGGAATTACCTGATTGGTTGGCAAGTTTCATATCACTCACAAAGTTGGTCATTGATCAATGTCAGAAATTGTTGTATCTGCCAGAGGGAATGCGTTCTCTTACCTCCTTAAAGAAACTTGTGGTTGATGATTGTCCTACATATGAAATGAAACTAAATTTATATAATTGTACCCATGCCAAAATCATATCAGAAATTGTAAATGAGAGAGATGATGCAGACTTTGACCCCGAACCCGATCCAGAATCAGGATCCTCTTTTGACGACCCCGACTCCGACCCCGACTCCGACGACGACGACCTCGACCCCGACTCCGAAGACCTACTCCGAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

403

Amino Acids

45.74

Weight (kDa)

4.78

Isoelectric Point (pI)

45.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 426, 782
AccBSI CCGCTC 1 cut(s) 827
AccI GTMKAC 1 cut(s) 463
AciI CCGC 2 cut(s) 262, 827
AclI AACGTT 1 cut(s) 66
AclWI GGATC 4 cut(s) 45, 1106, 1119, 1132
AcoI YGGCCR 1 cut(s) 220
AcsI RAATTY 3 cut(s) 784, 868, 1030
AdeI CACNNNGTG 1 cut(s) 143
AfaI GTAC 2 cut(s) 126, 1045
AfiI CCNNNNNNNGG 1 cut(s) 1121
AflII CTTAAG 1 cut(s) 688
AgsI TTSAA 7 cut(s) 62, 234, 253, 328, 610, 821, 842
AluBI AGCT 3 cut(s) 25, 218, 474
AluI AGCT 3 cut(s) 25, 218, 474
Alw21I GWGCWC 1 cut(s) 311
Alw44I GTGCAC 1 cut(s) 307
AlwI GGATC 4 cut(s) 45, 1106, 1119, 1132
AoxI GGCC 1 cut(s) 220
ApaLI GTGCAC 1 cut(s) 307
ApoI RAATTY 3 cut(s) 784, 868, 1030
Asp700I GAANNNNTTC 2 cut(s) 816, 967
AsuHPI GGTGA 1 cut(s) 155
BaeGI GKGCMC 1 cut(s) 311
BalI TGGCCA 1 cut(s) 222
BamHI GGATCC 1 cut(s) 1124
BbsI GAAGAC 2 cut(s) 18, 1197
Bbv12I GWGCWC 1 cut(s) 311
BccI CCATC 1 cut(s) 790
BclI TGATCA 2 cut(s) 540, 928
BfmI CTRYAG 2 cut(s) 267, 467
BfrI CTTAAG 1 cut(s) 688
BisI GCNGC 1 cut(s) 828
BlsI GCNGC 1 cut(s) 829
BmiI GGNNCC 3 cut(s) 391, 764, 1126
BmsI GCATC 3 cut(s) 112, 593, 1078
BpiI GAAGAC 2 cut(s) 18, 1197
BpuEI CTTGAG 1 cut(s) 304
BsaBI GATNNNNATC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 1201
BsaXI ACNNNNNCTCC 8 cut(s) 747, 777, 1130, 1142, 1160, 1169, 1172, 1199
Bsc4I CCNNNNNNNGG 1 cut(s) 1121
Bse1I ACTGG 1 cut(s) 726
Bse3DI GCAATG 1 cut(s) 803
Bse8I GATNNNNATC 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 1201
BseGI GGATG 2 cut(s) 608, 801
BseJI GATNNNNATC 1 cut(s) 102
BseLI CCNNNNNNNGG 1 cut(s) 1121
BseMI GCAATG 1 cut(s) 803
BseMII CTCAG 1 cut(s) 749
BseNI ACTGG 1 cut(s) 726
BseSI GKGCMC 1 cut(s) 311
BshFI GGCC 1 cut(s) 222
BsiHKAI GWGCWC 1 cut(s) 311
BslI CCNNNNNNNGG 1 cut(s) 1121
BsmI GAATGC 1 cut(s) 969
BsnI GGCC 1 cut(s) 222
Bsp1286I GDGCHC 1 cut(s) 311
Bsp1407I TGTACA 1 cut(s) 124
Bsp143I GATC 6 cut(s) 50, 118, 540, 928, 1111, 1124
BspACI CCGC 2 cut(s) 262, 827
BspANI GGCC 1 cut(s) 222
BspCNI CTCAG 1 cut(s) 750
BspLI GGNNCC 3 cut(s) 391, 764, 1126
BspMAI CTGCAG 1 cut(s) 471
BspPI GGATC 4 cut(s) 45, 1106, 1119, 1132
BspTI CTTAAG 1 cut(s) 688
BsrBI CCGCTC 1 cut(s) 827
BsrDI GCAATG 1 cut(s) 803
BsrGI TGTACA 1 cut(s) 124
BsrI ACTGG 1 cut(s) 726
BssECI CCNNGG 1 cut(s) 1201
BssMI GATC 6 cut(s) 50, 118, 540, 928, 1111, 1124
Bst4CI ACNGT 2 cut(s) 157, 558
BstAFI CTTAAG 1 cut(s) 688
BstAPI GCANNNNNTGC 1 cut(s) 475
BstAUI TGTACA 1 cut(s) 124
BstC8I GCNNGC 2 cut(s) 220, 476
BstDEI CTNAG 2 cut(s) 353, 758
BstF5I GGATG 2 cut(s) 608, 801
BstKTI GATC 6 cut(s) 53, 121, 543, 931, 1114, 1127
BstMBI GATC 6 cut(s) 50, 118, 540, 928, 1111, 1124
BstMWI GCNNNNNNNGC 1 cut(s) 475
BstNSI RCATGY 1 cut(s) 862
BstSFI CTRYAG 2 cut(s) 267, 467
BstSLI GKGCMC 1 cut(s) 311
BstV2I GAAGAC 2 cut(s) 18, 1197
BstX2I RGATCY 2 cut(s) 50, 1124
BstYI RGATCY 2 cut(s) 50, 1124
BsuRI GGCC 1 cut(s) 222
BtsCI GGATG 2 cut(s) 608, 801
BtsIMutI CAGTG 3 cut(s) 162, 554, 755
Cac8I GCNNGC 2 cut(s) 220, 476
Csp6I GTAC 2 cut(s) 125, 1044
CviAII CATG 4 cut(s) 80, 116, 859, 1049
CviJI RGCY 6 cut(s) 25, 218, 222, 474, 763, 830
CviKI_1 RGCY 6 cut(s) 25, 218, 222, 474, 763, 830
CviQI GTAC 2 cut(s) 125, 1044
DdeI CTNAG 2 cut(s) 353, 758
DpnI GATC 6 cut(s) 52, 120, 542, 930, 1113, 1126
DpnII GATC 6 cut(s) 50, 118, 540, 928, 1111, 1124
DraI TTTAAA 1 cut(s) 34
DraIII CACNNNGTG 1 cut(s) 143
EaeI YGGCCR 1 cut(s) 220
Eco32I GATATC 1 cut(s) 410
EcoRV GATATC 1 cut(s) 410
EcoT22I ATGCAT 1 cut(s) 105
FaeI CATG 4 cut(s) 83, 119, 862, 1052
FatI CATG 4 cut(s) 79, 115, 858, 1048
FauNDI CATATG 1 cut(s) 1015
FbaI TGATCA 2 cut(s) 540, 928
FblI GTMKAC 1 cut(s) 463
Fnu4HI GCNGC 1 cut(s) 828
FokI GGATG 2 cut(s) 615, 808
Fsp4HI GCNGC 1 cut(s) 828
GluI GCNGC 1 cut(s) 828
HaeIII GGCC 1 cut(s) 222
Hin1II CATG 4 cut(s) 83, 119, 862, 1052
HinfI GANTC 9 cut(s) 296, 324, 505, 621, 694, 1118, 1145, 1157, 1184
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 2 cut(s) 309, 464
Hpy188III TCNNGA 3 cut(s) 321, 1115, 1122
Hpy8I GTNNAC 2 cut(s) 309, 464
Hpy99I CGWCG 3 cut(s) 1166, 1169, 1172
HpyAV CCTTC 2 cut(s) 310, 848
HpyCH4III ACNGT 2 cut(s) 157, 558
HpyCH4IV ACGT 2 cut(s) 66, 735
HpyCH4V TGCA 9 cut(s) 103, 137, 167, 244, 309, 455, 469, 478, 1091
HpyF10VI GCNNNNNNNGC 1 cut(s) 475
HpyF3I CTNAG 2 cut(s) 353, 758
HpySE526I ACGT 2 cut(s) 66, 735
Hsp92II CATG 4 cut(s) 83, 119, 862, 1052
Ksp22I TGATCA 2 cut(s) 540, 928
Kzo9I GATC 6 cut(s) 50, 118, 540, 928, 1111, 1124
LmnI GCTCC 2 cut(s) 768, 824
LpnPI CCDG 8 cut(s) 204, 407, 707, 822, 897, 969, 1107, 1128
LweI GCATC 3 cut(s) 112, 593, 1078
MaeII ACGT 2 cut(s) 66, 735
MaeIII GTNAC 2 cut(s) 348, 516
MalI GATC 6 cut(s) 52, 120, 542, 930, 1113, 1126
MbiI CCGCTC 1 cut(s) 827
MboI GATC 6 cut(s) 50, 118, 540, 928, 1111, 1124
MboII GAAGA 2 cut(s) 23, 1202
MfeI CAATTG 1 cut(s) 132
MflI RGATCY 2 cut(s) 50, 1124
MhlI GDGCHC 1 cut(s) 311
MlsI TGGCCA 1 cut(s) 222
MluNI TGGCCA 1 cut(s) 222
MlyI GAGTC 4 cut(s) 688, 1139, 1151, 1178
MmeI TCCRAC 2 cut(s) 1173, 1185
MnlI CCTC 8 cut(s) 557, 753, 868, 952, 988, 1138, 1184, 1196
Mox20I TGGCCA 1 cut(s) 222
Mph1103I ATGCAT 1 cut(s) 105
MroXI GAANNNNTTC 2 cut(s) 816, 967
MscI TGGCCA 1 cut(s) 222
MseI TTAA 6 cut(s) 33, 563, 627, 650, 689, 983
Msp20I TGGCCA 1 cut(s) 222
MspCI CTTAAG 1 cut(s) 688
MunI CAATTG 1 cut(s) 132
Mva1269I GAATGC 1 cut(s) 969
MwoI GCNNNNNNNGC 1 cut(s) 475
NdeI CATATG 1 cut(s) 1015
NdeII GATC 6 cut(s) 50, 118, 540, 928, 1111, 1124
NlaIII CATG 4 cut(s) 83, 119, 862, 1052
NlaIV GGNNCC 3 cut(s) 391, 764, 1126
NsiI ATGCAT 1 cut(s) 105
NspI RCATGY 1 cut(s) 862
PcsI WCGNNNNNNNCGW 1 cut(s) 1173
PctI GAATGC 1 cut(s) 969
PdmI GAANNNNTTC 2 cut(s) 816, 967
PfeI GAWTC 5 cut(s) 296, 324, 505, 621, 1118
PkrI GCNGC 1 cut(s) 829
PleI GAGTC 4 cut(s) 688, 1139, 1151, 1178
PpsI GAGTC 4 cut(s) 688, 1139, 1151, 1178
PsiI TTATAA 2 cut(s) 426, 782
Psp1406I AACGTT 1 cut(s) 66
PspN4I GGNNCC 3 cut(s) 391, 764, 1126
PstI CTGCAG 1 cut(s) 471
PsuI RGATCY 2 cut(s) 50, 1124
RsaI GTAC 2 cut(s) 126, 1045
RsaNI GTAC 2 cut(s) 125, 1044
SaqAI TTAA 6 cut(s) 33, 563, 627, 650, 689, 983
SatI GCNGC 1 cut(s) 828
Sau3AI GATC 6 cut(s) 50, 118, 540, 928, 1111, 1124
SchI GAGTC 4 cut(s) 688, 1139, 1151, 1178
SduI GDGCHC 1 cut(s) 311
SfaNI GCATC 3 cut(s) 112, 593, 1078
SfcI CTRYAG 2 cut(s) 267, 467
SmlI CTYRAG 2 cut(s) 319, 688
SmoI CTYRAG 2 cut(s) 319, 688
SsiI CCGC 2 cut(s) 262, 827
SspI AATATT 3 cut(s) 229, 332, 631
TaaI ACNGT 2 cut(s) 157, 558
TaiI ACGT 2 cut(s) 69, 738
TaqI TCGA 2 cut(s) 619, 1176
TatI WGTACW 1 cut(s) 124
TauI GCSGC 1 cut(s) 830
TfiI GAWTC 5 cut(s) 296, 324, 505, 621, 1118
Tru1I TTAA 6 cut(s) 33, 563, 627, 650, 689, 983
Tru9I TTAA 6 cut(s) 33, 563, 627, 650, 689, 983
TscAI CASTG 3 cut(s) 162, 561, 762
TspDTI ATGAA 7 cut(s) 309, 351, 444, 455, 892, 1032, 1037
TspRI CASTG 3 cut(s) 162, 561, 762
Vha464I CTTAAG 1 cut(s) 688
VneI GTGCAC 1 cut(s) 307
XapI RAATTY 3 cut(s) 784, 868, 1030
XceI RCATGY 1 cut(s) 862
XmiI GTMKAC 1 cut(s) 463
XmnI GAANNNNTTC 2 cut(s) 816, 967
Zsp2I ATGCAT 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.