Prupe.7G060300_v2.0.a1

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0001156
Physical Location & Seq
Forward (+)
9911786 .. 9912930
1145 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G060300.1

Sequence Viewer

Length: 243 bp
ATGTGTGAGAATTTGGAGGCATTACCTGATTGGTTGGCAAGTTTCACATCACTCACAAAGTTGGTCATCGATCAATGTCAGAAATTGTTGTCTCTGCCAGAGGGAATGCGTTCTCTTACCTCCTTAAATAAACTTGTGGTTGATGATTGTCCTGAATTGGAGAGGAGATGCCAGTGCGACATTGGAGAAGATTGGCCCAAGATTTCTCATGTGCCACATGTTTCCTTGTCCTCCTTCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

81

Amino Acids

9.05

Weight (kDa)

4.66

Isoelectric Point (pI)

37.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 10
AflIII ACRYGT 1 cut(s) 217
Alw26I GTCTC 1 cut(s) 96
AoxI GGCC 1 cut(s) 194
ApoI RAATTY 1 cut(s) 10
Asp700I GAANNNNTTC 1 cut(s) 109
AspS9I GGNCC 1 cut(s) 195
BcoDI GTCTC 1 cut(s) 96
BmgT120I GGNCC 1 cut(s) 195
BmsI GCATC 1 cut(s) 158
Bsa29I ATCGAT 1 cut(s) 69
Bse1I ACTGG 1 cut(s) 172
BseCI ATCGAT 1 cut(s) 69
BseNI ACTGG 1 cut(s) 172
BseRI GAGGAG 1 cut(s) 178
BshFI GGCC 1 cut(s) 196
BshVI ATCGAT 1 cut(s) 69
BsmAI GTCTC 1 cut(s) 96
BsmI GAATGC 1 cut(s) 111
BsnI GGCC 1 cut(s) 196
Bsp143I GATC 1 cut(s) 70
BspANI GGCC 1 cut(s) 196
BspDI ATCGAT 1 cut(s) 69
BsrI ACTGG 1 cut(s) 172
BssMI GATC 1 cut(s) 70
BstKTI GATC 1 cut(s) 73
BstMAI GTCTC 1 cut(s) 96
BstMBI GATC 1 cut(s) 70
BstNSI RCATGY 1 cut(s) 221
Bsu15I ATCGAT 1 cut(s) 69
BsuRI GGCC 1 cut(s) 196
BsuTUI ATCGAT 1 cut(s) 69
BtsIMutI CAGTG 1 cut(s) 179
Cfr13I GGNCC 1 cut(s) 195
ClaI ATCGAT 1 cut(s) 69
CviAII CATG 2 cut(s) 209, 218
CviJI RGCY 1 cut(s) 196
CviKI_1 RGCY 1 cut(s) 196
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
FaeI CATG 2 cut(s) 212, 221
FaiI YATR 2 cut(s) 210, 219
FatI CATG 2 cut(s) 208, 217
HaeIII GGCC 1 cut(s) 196
Hin1II CATG 2 cut(s) 212, 221
Hpy188I TCNGA 1 cut(s) 81
Hpy188III TCNNGA 1 cut(s) 152
Hsp92II CATG 2 cut(s) 212, 221
Kzo9I GATC 1 cut(s) 70
LpnPI CCDG 4 cut(s) 39, 111, 165, 185
LweI GCATC 1 cut(s) 158
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 1 cut(s) 200
MluCI AATT 3 cut(s) 10, 83, 155
MnlI CCTC 5 cut(s) 10, 94, 130, 156, 241
MroXI GAANNNNTTC 1 cut(s) 109
MseI TTAA 1 cut(s) 125
Mva1269I GAATGC 1 cut(s) 111
NdeII GATC 1 cut(s) 70
NlaIII CATG 2 cut(s) 212, 221
NspI RCATGY 1 cut(s) 221
PciI ACATGT 1 cut(s) 217
PctI GAATGC 1 cut(s) 111
PdmI GAANNNNTTC 1 cut(s) 109
PscI ACATGT 1 cut(s) 217
PspPI GGNCC 1 cut(s) 195
SaqAI TTAA 1 cut(s) 125
Sau3AI GATC 1 cut(s) 70
Sau96I GGNCC 1 cut(s) 195
SetI ASST 2 cut(s) 28, 122
SfaNI GCATC 1 cut(s) 158
Sse9I AATT 3 cut(s) 10, 83, 155
TaqI TCGA 2 cut(s) 69, 237
TasI AATT 3 cut(s) 10, 83, 155
Tru1I TTAA 1 cut(s) 125
Tru9I TTAA 1 cut(s) 125
TscAI CASTG 1 cut(s) 179
TspRI CASTG 1 cut(s) 179
XapI RAATTY 1 cut(s) 10
XceI RCATGY 1 cut(s) 221
XcmI CCANNNNNNNNNTGG 1 cut(s) 179
XmnI GAANNNNTTC 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.