Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001156

Physical Location & Seq

Genomic Coordinates Forward (+)

29632083 .. 29635050

Gene Structure 2968 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG271300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGGTATGGACTACATAAGGCAGTTTTGTTCTAGATCGTTGTTTCAAGTCGAGGTAGATCTCAAAACAGCCATAACTTTTAAAATACATGATCTAGTTCATGATTTAGCAATTTCGGTGGCACAAGTAGAGTACTCCACCGTCAATTGTCGTCCCTCTAATGCTTTTGAAATGGTTCGACATGTGTCAATATCGGAAAAGGACTTGCTTGGAGAAGAGGCACAAGTTCCCGATTTTATGCTCAAGTCAAAGAAATTACGAACCATTCTAATTCCTGAAGATGGTCAGATGAATCAACGTTTTGTGAAGACATGCATCTCGAGATTTAAATATATGCGGGTGCTGGATATCAGTGGGTCGCCTCTTGAGGAGCTACCAAGTTCCATTGGTAGTTTGTTTCATCTGAGATATCTCAACTTGTCTTATAATAGTAAGATAAAAAGGCTTCCCAATTCCATCAGTAAGCTGCTGAATTTGGAGACCTTGAACTTTCAGGATTGCGACGCACTTGAGGAGATACCCAAAGACATAGGGAACCTGATCAACCTACGAAGCTTGACGATAAAAACACAGCAGACGTATTTGCCCAAAGGAATTAGACGCCTCACCTTACTTCAACAATTAGGTTTTGATGCATGTGTCAATCTTAAATCTTTGGGCGAAGAGATCGAATTCCTCAACAACCTTCGCACATTGTGGATTACCGGTTGTAATAATTTGGAATCGCTGCCACCACATATGAAACACATGACCGCTTTAGAGACTTTGGGTGTCAATGATTGCAAGAAGCTTCAGTTGATGATGAGATCAGGGGAAGGTCCTCAACGTCTTCGATCATTGCTTATCGTGAATTCAAGTTTGGAGGCTTTGCCCCCTGGGCTTATTGAAGATTCTGCAGACACTCTACAGAGCATAGCACTTGGCGAATGTCATAATCTCACAGCACTTTCGGAGTTGCTTGCATTGGGTGAGTTTTTTGGGGTACGGCAGCTGACTGCATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

334

Amino Acids

37.68

Weight (kDa)

6.41

Isoelectric Point (pI)

48.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_DRP	PF23559	1 - 37	1.9e-06	Disease resistance protein Winged helix domain
LRR_14	PF23598	105 - 299	2.8e-26	Leucine-rich repeat region
LRR_RPS2	PF23247	130 - 262	3.3e-07	Plant disease resistance protein RPS2-like, leucine-rich repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001156)

Species	Orthologous Gene IDs
malus_domestica	MD09G1161800.v1.1 MD09G1161900.v1.1 MD12G1180400.v1.1 MD14G1068500.v1.1 MD14G1068900.v1.1 MD14G1069100.v1.1 MD14G1070400.v1.1 MD14G1072100.v1.1 MD14G1072300.v1.1 MD14G1072500.v1.1
prunus_persica	Prupe.7G033700_v2.0.a1 Prupe.7G060200_v2.0.a1 Prupe.7G060300_v2.0.a1 Prupe.7G062200_v2.0.a1 Prupe.7G062300_v2.0.a1 Prupe.7G062500_v2.0.a1 Prupe.7G062600_v2.0.a1 Prupe.7G062700_v2.0.a1 Prupe.7G062800_v2.0.a1 Prupe.7G062900_v2.0.a1 Prupe.7G063000_v2.0.a1 Prupe.7G063800_v2.0.a1
pyrus_communis	pycom12g17000 pycom12g17010 pycom14g05670 pycom14g05690 pycom14g05730 pycom14g05810 pycom14g05820 pycom14g05860 pycom14g05900 pycom14g05920 pycom14g05950 pycom14g05960 pycom14g06200
rosa_chinensis	RchiOBHm_Chr3g0482391 RchiOBHm_Chr3g0482451 RchiOBHm_Chr5g0007861
rosa_multiflora	Rmu_sc0002969.1_g000005 Rmu_sc0013521.1_g000002 Rmu_sc0013521.1_g000003 Rmu_sc0021597.1_g000001
rosa_roxburghii	Rroxscaffold_6G00399360
rosa_rugosa	Rorug03G0193500 Rorug03G0195900 Rorug03G0196100
rosa_samantha	Rh1BG172200 Rh2CG271300 Rh3BG282500 Rh3BG282900 Rh3BG283100 Rh3CG279500 Rh3DG275300 Rh3DG275700
rosa_wichuraiana	Rw3G022230 Rw3G022260 Rw3G022280 Rw3G022310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	426
AciI	CCGC	2 cut(s)	337, 753
AclI	AACGTT	1 cut(s)	298
AcsI	RAATTY	3 cut(s)	472, 671, 850
AcuI	CTGAAG	2 cut(s)	297, 776
AcyI	GRCGYC	1 cut(s)	601
AdeI	CACNNNGTG	1 cut(s)	696
AfaI	GTAC	2 cut(s)	134, 984
AfiI	CCNNNNNNNGG	1 cut(s)	281
AflIII	ACRYGT	1 cut(s)	181
AgeI	ACCGGT	1 cut(s)	704
AgsI	TTSAA	6 cut(s)	47, 170, 487, 617, 855, 887
AjnI	CCWGG	1 cut(s)	874
AjuI	GAANNNNNNNTTGG	2 cut(s)	842, 874
AluBI	AGCT	5 cut(s)	373, 466, 555, 790, 991
AluI	AGCT	5 cut(s)	373, 466, 555, 790, 991
Alw26I	GTCTC	2 cut(s)	473, 755
Ama87I	CYCGRG	1 cut(s)	319
ApeKI	GCWGC	3 cut(s)	466, 727, 988
ApoI	RAATTY	3 cut(s)	472, 671, 850
AsiGI	ACCGGT	1 cut(s)	704
Asp700I	GAANNNNTTC	1 cut(s)	174
AspS9I	GGNCC	1 cut(s)	818
AsuHPI	GGTGA	2 cut(s)	598, 980
AvaI	CYCGRG	1 cut(s)	319
AvaII	GGWCC	1 cut(s)	818
BbsI	GAAGAC	2 cut(s)	314, 821
BbvI	GCAGC	3 cut(s)	453, 714, 1000
BccI	CCATC	2 cut(s)	275, 464
BceAI	ACGGC	1 cut(s)	1001
BciT130I	CCWGG	1 cut(s)	876
BclI	TGATCA	1 cut(s)	540
BcoDI	GTCTC	2 cut(s)	473, 755
BfaI	CTAG	2 cut(s)	33, 95
BfmI	CTRYAG	2 cut(s)	894, 905
BglI	GCCNNNNNGGC	1 cut(s)	877
BglII	AGATCT	1 cut(s)	58
BisI	GCNGC	3 cut(s)	467, 728, 989
BlsI	GCNGC	3 cut(s)	468, 729, 990
BmcAI	AGTACT	1 cut(s)	134
Bme1390I	CCNGG	1 cut(s)	876
Bme18I	GGWCC	1 cut(s)	818
BmeT110I	CYCGRG	1 cut(s)	319
BmgT120I	GGNCC	1 cut(s)	818
BmiI	GGNNCC	1 cut(s)	536
BmrFI	CCNGG	1 cut(s)	876
BmsI	GCATC	2 cut(s)	324, 622
BoxI	GACNNNNGTC	1 cut(s)	184
BpiI	GAAGAC	2 cut(s)	314, 821
BpuEI	CTTGAG	3 cut(s)	227, 386, 530
BsaHI	GRCGYC	1 cut(s)	601
BsaI	GGTCTC	1 cut(s)	473
BsaJI	CCNNGG	2 cut(s)	874, 875
BsaWI	WCCGGW	1 cut(s)	704
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse118I	RCCGGY	1 cut(s)	704
Bse3DI	GCAATG	1 cut(s)	836
BseBI	CCWGG	1 cut(s)	876
BseDI	CCNNGG	2 cut(s)	874, 875
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMI	GCAATG	1 cut(s)	836
BseMII	CTCAG	1 cut(s)	395
BseRI	GAGGAG	2 cut(s)	383, 527
BseXI	GCAGC	3 cut(s)	453, 714, 1000
BshTI	ACCGGT	1 cut(s)	704
BsiHKCI	CYCGRG	1 cut(s)	319
BsiSI	CCGG	1 cut(s)	705
BslFI	GGGAC	1 cut(s)	138
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmAI	GTCTC	2 cut(s)	473, 755
BsmFI	GGGAC	1 cut(s)	138
Bso31I	GGTCTC	1 cut(s)	473
BsoBI	CYCGRG	1 cut(s)	319
Bsp143I	GATC	7 cut(s)	35, 58, 91, 540, 666, 806, 833
BspACI	CCGC	2 cut(s)	337, 753
BspCNI	CTCAG	1 cut(s)	396
BspHI	TCATGA	1 cut(s)	100
BspLI	GGNNCC	1 cut(s)	536
BspMAI	CTGCAG	1 cut(s)	898
BspTNI	GGTCTC	1 cut(s)	473
BsrDI	GCAATG	1 cut(s)	836
BsrFI	RCCGGY	1 cut(s)	704
BssAI	RCCGGY	1 cut(s)	704
BssECI	CCNNGG	2 cut(s)	874, 875
BssMI	GATC	7 cut(s)	35, 58, 91, 540, 666, 806, 833
BssNI	GRCGYC	1 cut(s)	601
Bst2UI	CCWGG	1 cut(s)	876
Bst4CI	ACNGT	1 cut(s)	142
Bst6I	CTCTTC	2 cut(s)	210, 657
BstACI	GRCGYC	1 cut(s)	601
BstC8I	GCNNGC	1 cut(s)	960
BstDEI	CTNAG	1 cut(s)	404
BstKTI	GATC	7 cut(s)	38, 61, 94, 543, 669, 809, 836
BstMAI	GTCTC	2 cut(s)	473, 755
BstMBI	GATC	7 cut(s)	35, 58, 91, 540, 666, 806, 833
BstMWI	GCNNNNNNNGC	1 cut(s)	877
BstNI	CCWGG	1 cut(s)	876
BstNSI	RCATGY	3 cut(s)	185, 315, 639
BstPAI	GACNNNNGTC	1 cut(s)	184
BstSCI	CCNGG	1 cut(s)	874
BstSFI	CTRYAG	2 cut(s)	894, 905
BstV1I	GCAGC	3 cut(s)	453, 714, 1000
BstV2I	GAAGAC	2 cut(s)	314, 821
BstX2I	RGATCY	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	58
BtsIMutI	CAGTG	1 cut(s)	358
Cac8I	GCNNGC	1 cut(s)	960
CciI	TCATGA	1 cut(s)	100
Cfr10I	RCCGGY	1 cut(s)	704
Cfr13I	GGNCC	1 cut(s)	818
CseI	GACGC	2 cut(s)	512, 609
Csp6I	GTAC	2 cut(s)	133, 983
CspAI	ACCGGT	1 cut(s)	704
CspCI	CAANNNNNGTGG	2 cut(s)	99, 134
CviAII	CATG	6 cut(s)	89, 101, 182, 312, 636, 748
CviJI	RGCY	9 cut(s)	71, 373, 445, 466, 555, 790, 866, 880, 991
CviKI_1	RGCY	9 cut(s)	71, 373, 445, 466, 555, 790, 866, 880, 991
CviQI	GTAC	2 cut(s)	133, 983
DdeI	CTNAG	1 cut(s)	404
DpnI	GATC	7 cut(s)	37, 60, 93, 542, 668, 808, 835
DpnII	GATC	7 cut(s)	35, 58, 91, 540, 666, 806, 833
DraI	TTTAAA	2 cut(s)	82, 328
DraIII	CACNNNGTG	1 cut(s)	696
Eam1104I	CTCTTC	2 cut(s)	210, 657
EarI	CTCTTC	2 cut(s)	210, 657
Eco31I	GGTCTC	1 cut(s)	473
Eco32I	GATATC	2 cut(s)	349, 410
Eco47I	GGWCC	1 cut(s)	818
Eco57I	CTGAAG	2 cut(s)	297, 776
Eco88I	CYCGRG	1 cut(s)	319
EcoO109I	RGGNCCY	1 cut(s)	818
EcoRI	GAATTC	2 cut(s)	671, 850
EcoRII	CCWGG	1 cut(s)	874
EcoRV	GATATC	2 cut(s)	349, 410
EcoT22I	ATGCAT	2 cut(s)	317, 637
FaeI	CATG	6 cut(s)	92, 104, 185, 315, 639, 751
FaqI	GGGAC	1 cut(s)	138
FatI	CATG	6 cut(s)	88, 100, 181, 311, 635, 747
FauI	CCCGC	1 cut(s)	330
FauNDI	CATATG	1 cut(s)	738
FbaI	TGATCA	1 cut(s)	540
Fnu4HI	GCNGC	3 cut(s)	467, 728, 989
Fsp4HI	GCNGC	3 cut(s)	467, 728, 989
FspBI	CTAG	2 cut(s)	33, 95
GluI	GCNGC	3 cut(s)	467, 728, 989
HapII	CCGG	1 cut(s)	705
HgaI	GACGC	2 cut(s)	512, 609
Hin1I	GRCGYC	1 cut(s)	601
Hin1II	CATG	6 cut(s)	92, 104, 185, 315, 639, 751
HindIII	AAGCTT	2 cut(s)	553, 788
HinfI	GANTC	3 cut(s)	292, 722, 890
HpaII	CCGG	1 cut(s)	705
HphI	GGTGA	2 cut(s)	598, 980
Hpy188I	TCNGA	4 cut(s)	196, 288, 405, 952
Hpy188III	TCNNGA	9 cut(s)	33, 101, 230, 275, 319, 321, 365, 494, 847
Hpy99I	CGWCG	1 cut(s)	506
HpyAV	CCTTC	2 cut(s)	695, 809
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	3 cut(s)	298, 578, 826
HpyCH4V	TGCA	6 cut(s)	315, 635, 783, 896, 962, 998
HpyF10VI	GCNNNNNNNGC	1 cut(s)	877
HpyF3I	CTNAG	1 cut(s)	404
HpySE526I	ACGT	3 cut(s)	298, 578, 826
Hsp92I	GRCGYC	1 cut(s)	601
Hsp92II	CATG	6 cut(s)	92, 104, 185, 315, 639, 751
Ksp22I	TGATCA	1 cut(s)	540
Kzo9I	GATC	7 cut(s)	35, 58, 91, 540, 666, 806, 833
LmnI	GCTCC	1 cut(s)	370
LpnPI	CCDG	8 cut(s)	288, 329, 479, 551, 718, 795, 861, 888
Lsp1109I	GCAGC	3 cut(s)	453, 714, 1000
LweI	GCATC	2 cut(s)	324, 622
MaeI	CTAG	2 cut(s)	33, 95
MaeII	ACGT	3 cut(s)	298, 578, 826
MalI	GATC	7 cut(s)	37, 60, 93, 542, 668, 808, 835
MboI	GATC	7 cut(s)	35, 58, 91, 540, 666, 806, 833
MboII	GAAGA	6 cut(s)	227, 290, 319, 674, 821, 899
MfeI	CAATTG	1 cut(s)	145
MflI	RGATCY	1 cut(s)	58
Mph1103I	ATGCAT	2 cut(s)	317, 637
MroXI	GAANNNNTTC	1 cut(s)	174
MseI	TTAA	3 cut(s)	81, 327, 648
MspA1I	CMGCKG	1 cut(s)	991
MspI	CCGG	1 cut(s)	705
MspR9I	CCNGG	1 cut(s)	876
MunI	CAATTG	1 cut(s)	145
MvaI	CCWGG	1 cut(s)	876
MwoI	GCNNNNNNNGC	1 cut(s)	877
NdeI	CATATG	1 cut(s)	738
NdeII	GATC	7 cut(s)	35, 58, 91, 540, 666, 806, 833
NlaIII	CATG	6 cut(s)	92, 104, 185, 315, 639, 751
NlaIV	GGNNCC	1 cut(s)	536
NsiI	ATGCAT	2 cut(s)	317, 637
NspI	RCATGY	3 cut(s)	185, 315, 639
PaeR7I	CTCGAG	1 cut(s)	319
PagI	TCATGA	1 cut(s)	100
PasI	CCCWGGG	1 cut(s)	875
PciI	ACATGT	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	174
PfeI	GAWTC	3 cut(s)	292, 722, 890
PinAI	ACCGGT	1 cut(s)	704
PkrI	GCNGC	3 cut(s)	468, 729, 990
PpuMI	RGGWCCY	1 cut(s)	818
PscI	ACATGT	1 cut(s)	181
PshAI	GACNNNNGTC	1 cut(s)	184
PsiI	TTATAA	1 cut(s)	426
Psp1406I	AACGTT	1 cut(s)	298
Psp5II	RGGWCCY	1 cut(s)	818
Psp6I	CCWGG	1 cut(s)	874
PspGI	CCWGG	1 cut(s)	874
PspN4I	GGNNCC	1 cut(s)	536
PspPI	GGNCC	1 cut(s)	818
PspPPI	RGGWCCY	1 cut(s)	818
PstI	CTGCAG	1 cut(s)	898
PsuI	RGATCY	1 cut(s)	58
PvuII	CAGCTG	1 cut(s)	991
RsaI	GTAC	2 cut(s)	134, 984
RsaNI	GTAC	2 cut(s)	133, 983
SaqAI	TTAA	3 cut(s)	81, 327, 648
SatI	GCNGC	3 cut(s)	467, 728, 989
Sau3AI	GATC	7 cut(s)	35, 58, 91, 540, 666, 806, 833
Sau96I	GGNCC	1 cut(s)	818
ScaI	AGTACT	1 cut(s)	134
ScrFI	CCNGG	1 cut(s)	876
SfaNI	GCATC	2 cut(s)	324, 622
SfcI	CTRYAG	2 cut(s)	894, 905
Sfr274I	CTCGAG	1 cut(s)	319
SinI	GGWCC	1 cut(s)	818
SlaI	CTCGAG	1 cut(s)	319
SmiI	ATTTAAAT	1 cut(s)	328
SmlI	CTYRAG	4 cut(s)	242, 319, 365, 509
SmoI	CTYRAG	4 cut(s)	242, 319, 365, 509
SsiI	CCGC	2 cut(s)	337, 753
SspMI	CTAG	2 cut(s)	33, 95
StyD4I	CCNGG	1 cut(s)	874
SwaI	ATTTAAAT	1 cut(s)	328
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	3 cut(s)	301, 581, 829
TaqI	TCGA	5 cut(s)	51, 178, 320, 669, 832
TatI	WGTACW	1 cut(s)	132
TfiI	GAWTC	3 cut(s)	292, 722, 890
Tru1I	TTAA	3 cut(s)	81, 327, 648
Tru9I	TTAA	3 cut(s)	81, 327, 648
TscAI	CASTG	1 cut(s)	358
TseI	GCWGC	3 cut(s)	466, 727, 988
TspDTI	ATGAA	4 cut(s)	89, 305, 389, 755
TspRI	CASTG	1 cut(s)	358
VpaK11BI	GGWCC	1 cut(s)	818
XapI	RAATTY	3 cut(s)	472, 671, 850
XbaI	TCTAGA	1 cut(s)	32
XceI	RCATGY	3 cut(s)	185, 315, 639
XhoI	CTCGAG	1 cut(s)	319
XmnI	GAANNNNTTC	1 cut(s)	174
XspI	CTAG	2 cut(s)	33, 95
ZrmI	AGTACT	1 cut(s)	134
Zsp2I	ATGCAT	2 cut(s)	317, 637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.