pycom14g05670

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Reverse (-)
5522589 .. 5523048
460 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g05670.2

Sequence Viewer

Length: 324 bp
ATGAGGTGTAGTAATATAACGTGTTTGCCGCGTGATAAGAGTTATCTTGCATCATTACGCTCTTTGATGACAGTTAATTGTAAACAACTTGATTTGGTGATGGAAAACTATCAAGTAATTCCACTAAGGCTCCAACAATTGAGGATTGAAGGAGTACCACGAATGGCGGCATTGCCTGAATGGTTTCAAGGAGCCACAAACACACTACAAGAGTTTGGTATAGCAGATTGTGAGAATTTGGAAGCATTACCTGGGAGATGCCAGCAAGACACAAGAGAAGATTGGCCAGAGATTTCTCATGTTCCATTTGTTTATTTTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

108

Amino Acids

12.43

Weight (kDa)

5.04

Isoelectric Point (pI)

53.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 31
AciI CCGC 2 cut(s) 29, 167
AcoI YGGCCR 1 cut(s) 284
AcsI RAATTY 1 cut(s) 235
AfaI GTAC 1 cut(s) 156
AflIII ACRYGT 1 cut(s) 20
AgsI TTSAA 2 cut(s) 149, 188
AjnI CCWGG 1 cut(s) 250
AoxI GGCC 1 cut(s) 284
ApoI RAATTY 1 cut(s) 235
Asp700I GAANNNNTTC 1 cut(s) 183
AsuHPI GGTGA 1 cut(s) 109
BalI TGGCCA 1 cut(s) 286
BccI CCATC 1 cut(s) 94
BciT130I CCWGG 1 cut(s) 252
BisI GCNGC 2 cut(s) 29, 168
BlsI GCNGC 2 cut(s) 30, 169
Bme1390I CCNGG 1 cut(s) 252
BmiI GGNNCC 2 cut(s) 131, 193
BmrFI CCNGG 1 cut(s) 252
BmsI GCATC 2 cut(s) 59, 248
BsaJI CCNNGG 1 cut(s) 251
BsaXI ACNNNNNCTCC 2 cut(s) 114, 144
Bse3DI GCAATG 1 cut(s) 170
BseBI CCWGG 1 cut(s) 252
BseDI CCNNGG 1 cut(s) 251
BseMI GCAATG 1 cut(s) 170
Bsh1236I CGCG 1 cut(s) 31
BshFI GGCC 1 cut(s) 286
BsnI GGCC 1 cut(s) 286
BspACI CCGC 2 cut(s) 29, 167
BspANI GGCC 1 cut(s) 286
BspFNI CGCG 1 cut(s) 31
BspLI GGNNCC 2 cut(s) 131, 193
BsrDI GCAATG 1 cut(s) 170
BssECI CCNNGG 1 cut(s) 251
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 1 cut(s) 73
BstC8I GCNNGC 1 cut(s) 263
BstDEI CTNAG 1 cut(s) 125
BstFNI CGCG 1 cut(s) 31
BstNI CCWGG 1 cut(s) 252
BstSCI CCNGG 1 cut(s) 250
BstUI CGCG 1 cut(s) 31
BsuRI GGCC 1 cut(s) 286
Cac8I GCNNGC 1 cut(s) 263
Csp6I GTAC 1 cut(s) 155
CviAII CATG 1 cut(s) 299
CviJI RGCY 3 cut(s) 130, 194, 286
CviKI_1 RGCY 3 cut(s) 130, 194, 286
CviQI GTAC 1 cut(s) 155
DdeI CTNAG 1 cut(s) 125
EaeI YGGCCR 1 cut(s) 284
EcoRII CCWGG 1 cut(s) 250
FaeI CATG 1 cut(s) 302
FaiI YATR 3 cut(s) 17, 221, 300
FatI CATG 1 cut(s) 298
Fnu4HI GCNGC 2 cut(s) 29, 168
Fsp4HI GCNGC 2 cut(s) 29, 168
GluI GCNGC 2 cut(s) 29, 168
HaeIII GGCC 1 cut(s) 286
Hin1II CATG 1 cut(s) 302
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 1 cut(s) 83
Hpy8I GTNNAC 1 cut(s) 83
HpyAV CCTTC 1 cut(s) 143
HpyCH4III ACNGT 1 cut(s) 73
HpyCH4IV ACGT 1 cut(s) 20
HpyCH4V TGCA 1 cut(s) 50
HpyF3I CTNAG 1 cut(s) 125
HpySE526I ACGT 1 cut(s) 20
Hsp92II CATG 1 cut(s) 302
LmnI GCTCC 2 cut(s) 135, 191
LpnPI CCDG 5 cut(s) 189, 237, 264, 275, 300
LweI GCATC 2 cut(s) 59, 248
MaeII ACGT 1 cut(s) 20
MboII GAAGA 1 cut(s) 290
MfeI CAATTG 1 cut(s) 137
MlsI TGGCCA 1 cut(s) 286
MluCI AATT 4 cut(s) 76, 117, 137, 235
MluNI TGGCCA 1 cut(s) 286
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 1 cut(s) 135
Mox20I TGGCCA 1 cut(s) 286
MroXI GAANNNNTTC 1 cut(s) 183
MscI TGGCCA 1 cut(s) 286
MseI TTAA 2 cut(s) 75, 322
Msp20I TGGCCA 1 cut(s) 286
MspR9I CCNGG 1 cut(s) 252
MunI CAATTG 1 cut(s) 137
MvaI CCWGG 1 cut(s) 252
MvnI CGCG 1 cut(s) 31
NlaIII CATG 1 cut(s) 302
NlaIV GGNNCC 2 cut(s) 131, 193
PdmI GAANNNNTTC 1 cut(s) 183
PkrI GCNGC 2 cut(s) 30, 169
Psp6I CCWGG 1 cut(s) 250
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 2 cut(s) 131, 193
RsaI GTAC 1 cut(s) 156
RsaNI GTAC 1 cut(s) 155
SaqAI TTAA 2 cut(s) 75, 322
SatI GCNGC 2 cut(s) 29, 168
ScrFI CCNGG 1 cut(s) 252
SetI ASST 3 cut(s) 8, 23, 253
SfaNI GCATC 2 cut(s) 59, 248
Sse9I AATT 4 cut(s) 76, 117, 137, 235
SsiI CCGC 2 cut(s) 29, 167
StyD4I CCNGG 1 cut(s) 250
TaaI ACNGT 1 cut(s) 73
TaiI ACGT 1 cut(s) 23
TasI AATT 4 cut(s) 76, 117, 137, 235
TauI GCSGC 2 cut(s) 31, 170
Tru1I TTAA 2 cut(s) 75, 322
Tru9I TTAA 2 cut(s) 75, 322
XapI RAATTY 1 cut(s) 235
XmnI GAANNNNTTC 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.