Rorug03G0196100

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
17242850 .. 17262181
19332 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0196100.1

Sequence Viewer

Length: 933 bp
ATGTCATTGAGGTACTGGGATCCCAATTACTCTAGGAAGCGACGAGGAAAACTACAAACAGATGATGGGGAGTTGAAATTTGGTGAATCTTTTTTCTCGTTTGTATTTGGCGATGGTGATCCAAATCAAGGAATTGAAGAAAAGAGATGGAAGATGATTGGGCACTACATATCCTCTAATGGTGGTGTTGTTGCAGCTGAAGAGCTTGCTCTATATCTTGATATAGAAACTTCAGTGGAAACTCCGACTGATGAAGCATACATCTTACCTGTTCTTTCACGGTATGAGGGTCAGCCTTTAATAGATGAAGAGGGAAACATTCTGTACCAGTTTCCATCTCTACAACGCACAGCTTCTATAAAGAAAAGAATATCGCCAAAGATTGGAGAAGCTGATAAATTTTTGGAGGAGAAATGGCAATTCTGTAAAACTAGCAATGCAGAGAGAGCAGTGGTCGTTGGACTTTGTGGACTTAATTTATATGGGATTATCATTCTGAGAAGCTTGTTAAAGGATCCTACAGTTGCCCAAGTTGGTTTTATCAAGTTTATTACAAGCATATTTCCTCTACTTCAGATTTATGCTGGTTCCTTCTTTGTAATTCCTCTGTTCAGGTGGTTTGTCTTGCTCAAGAATAATGCTGACATAGAAAAAAGAAATCAAGCCAGACAGCATTTTGCTCGAGACATTGAATTTCCTGATCTCTCACTAAGACGAAAGCTACTCAGTGCTCGGAACATGGCCCAAAGAACTGTCATAGGGCAGGACAAAATTGTTTATAGCTCTCGCAAGGATTTGGTTGAGCAAGAGTTGGATAGAGGGTTTCAACAGATAGACAGTCAGATGAAAAAAAGGCTACCATTACTTGTGACCGAAGCTACTAAAGAAATTAGTGTCTCACAACTCTGGCAGCAGCGAAACCTTTACACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

310

Amino Acids

35.78

Weight (kDa)

8.86

Isoelectric Point (pI)

55.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 383
AclWI GGATC 5 cut(s) 14, 27, 113, 509, 522
AcsI RAATTY 3 cut(s) 77, 398, 692
AcuI CTGAAG 3 cut(s) 216, 219, 557
AfaI GTAC 2 cut(s) 14, 326
AfiI CCNNNNNNNGG 2 cut(s) 128, 383
AgsI TTSAA 4 cut(s) 76, 137, 692, 827
AluBI AGCT 8 cut(s) 197, 205, 353, 392, 504, 721, 783, 878
AluI AGCT 8 cut(s) 197, 205, 353, 392, 504, 721, 783, 878
Alw21I GWGCWC 1 cut(s) 733
Alw26I GTCTC 2 cut(s) 678, 901
AlwI GGATC 5 cut(s) 14, 27, 113, 509, 522
Ama87I CYCGRG 1 cut(s) 681
AoxI GGCC 1 cut(s) 741
ApeKI GCWGC 3 cut(s) 194, 910, 913
ApoI RAATTY 3 cut(s) 77, 398, 692
AspS9I GGNCC 1 cut(s) 742
AsuHPI GGTGA 2 cut(s) 95, 128
AvaI CYCGRG 1 cut(s) 681
BaeGI GKGCMC 1 cut(s) 165
BamHI GGATCC 2 cut(s) 19, 514
Bbv12I GWGCWC 1 cut(s) 733
BbvI GCAGC 3 cut(s) 206, 922, 925
BccI CCATC 4 cut(s) 59, 107, 141, 343
BcgI CGANNNNNNTGC 2 cut(s) 662, 696
BcoDI GTCTC 2 cut(s) 678, 901
BfaI CTAG 2 cut(s) 33, 432
BfmI CTRYAG 1 cut(s) 519
BisI GCNGC 3 cut(s) 195, 911, 914
BlsI GCNGC 3 cut(s) 196, 912, 915
BmeT110I CYCGRG 1 cut(s) 681
BmgT120I GGNCC 1 cut(s) 742
BmiI GGNNCC 3 cut(s) 21, 516, 589
BmrI ACTGGG 1 cut(s) 25
BmuI ACTGGG 1 cut(s) 25
BpuEI CTTGAG 1 cut(s) 614
BsaBI GATNNNNATC 2 cut(s) 117, 123
Bsc4I CCNNNNNNNGG 2 cut(s) 128, 383
Bse1I ACTGG 2 cut(s) 20, 328
Bse3DI GCAATG 1 cut(s) 442
Bse8I GATNNNNATC 2 cut(s) 117, 123
BseJI GATNNNNATC 2 cut(s) 117, 123
BseLI CCNNNNNNNGG 2 cut(s) 128, 383
BseMI GCAATG 1 cut(s) 442
BseMII CTCAG 2 cut(s) 488, 739
BseNI ACTGG 2 cut(s) 20, 328
BseRI GAGGAG 1 cut(s) 422
BseSI GKGCMC 1 cut(s) 165
BseXI GCAGC 3 cut(s) 206, 922, 925
BshFI GGCC 1 cut(s) 743
BsiHKAI GWGCWC 1 cut(s) 733
BsiHKCI CYCGRG 1 cut(s) 681
BslI CCNNNNNNNGG 2 cut(s) 128, 383
BsmAI GTCTC 2 cut(s) 678, 901
BsnI GGCC 1 cut(s) 743
BsoBI CYCGRG 1 cut(s) 681
Bsp1286I GDGCHC 2 cut(s) 165, 733
Bsp143I GATC 4 cut(s) 19, 118, 514, 700
BspANI GGCC 1 cut(s) 743
BspCNI CTCAG 2 cut(s) 489, 738
BspLI GGNNCC 3 cut(s) 21, 516, 589
BspPI GGATC 5 cut(s) 14, 27, 113, 509, 522
BspQI GCTCTTC 1 cut(s) 195
BsrDI GCAATG 1 cut(s) 442
BsrI ACTGG 2 cut(s) 20, 328
BssMI GATC 4 cut(s) 19, 118, 514, 700
Bst4CI ACNGT 4 cut(s) 282, 523, 754, 839
Bst6I CTCTTC 2 cut(s) 195, 303
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 3 cut(s) 497, 710, 725
BstKTI GATC 4 cut(s) 22, 121, 517, 703
BstMAI GTCTC 2 cut(s) 678, 901
BstMBI GATC 4 cut(s) 19, 118, 514, 700
BstMWI GCNNNNNNNGC 1 cut(s) 446
BstSFI CTRYAG 1 cut(s) 519
BstSLI GKGCMC 1 cut(s) 165
BstV1I GCAGC 3 cut(s) 206, 922, 925
BstX2I RGATCY 2 cut(s) 19, 514
BstYI RGATCY 2 cut(s) 19, 514
BsuRI GGCC 1 cut(s) 743
BtgZI GCGATG 1 cut(s) 126
BtsI GCAGTG 1 cut(s) 456
BtsIMutI CAGTG 3 cut(s) 240, 456, 733
Cac8I GCNNGC 1 cut(s) 207
Cfr13I GGNCC 1 cut(s) 742
Csp6I GTAC 2 cut(s) 13, 325
CviAII CATG 1 cut(s) 739
CviQI GTAC 2 cut(s) 13, 325
DdeI CTNAG 3 cut(s) 497, 710, 725
DpnI GATC 4 cut(s) 21, 120, 516, 702
DpnII GATC 4 cut(s) 19, 118, 514, 700
Eam1104I CTCTTC 2 cut(s) 195, 303
EarI CTCTTC 2 cut(s) 195, 303
Eco57I CTGAAG 3 cut(s) 216, 219, 557
Eco88I CYCGRG 1 cut(s) 681
FaeI CATG 1 cut(s) 742
FatI CATG 1 cut(s) 738
Fnu4HI GCNGC 3 cut(s) 195, 911, 914
Fsp4HI GCNGC 3 cut(s) 195, 911, 914
FspBI CTAG 2 cut(s) 33, 432
GluI GCNGC 3 cut(s) 195, 911, 914
HaeIII GGCC 1 cut(s) 743
Hin1II CATG 1 cut(s) 742
HindIII AAGCTT 1 cut(s) 502
HinfI GANTC 1 cut(s) 86
HphI GGTGA 2 cut(s) 95, 128
Hpy166II GTNNAC 1 cut(s) 470
Hpy188I TCNGA 5 cut(s) 246, 498, 576, 735, 843
Hpy188III TCNNGA 4 cut(s) 218, 631, 683, 698
Hpy8I GTNNAC 1 cut(s) 470
Hpy99I CGWCG 1 cut(s) 45
HpyAV CCTTC 1 cut(s) 601
HpyCH4III ACNGT 4 cut(s) 282, 523, 754, 839
HpyCH4V TGCA 2 cut(s) 194, 440
HpyF10VI GCNNNNNNNGC 1 cut(s) 446
HpyF3I CTNAG 3 cut(s) 497, 710, 725
Hsp92II CATG 1 cut(s) 742
Kzo9I GATC 4 cut(s) 19, 118, 514, 700
LguI GCTCTTC 1 cut(s) 195
LpnPI CCDG 8 cut(s) 282, 341, 570, 598, 679, 711, 749, 892
Lsp1109I GCAGC 3 cut(s) 206, 922, 925
MaeI CTAG 2 cut(s) 33, 432
MaeIII GTNAC 1 cut(s) 868
MalI GATC 4 cut(s) 21, 120, 516, 702
MboI GATC 4 cut(s) 19, 118, 514, 700
MboII GAAGA 4 cut(s) 149, 163, 212, 320
MflI RGATCY 2 cut(s) 19, 514
MhlI GDGCHC 2 cut(s) 165, 733
MmeI TCCRAC 3 cut(s) 269, 439, 792
MnlI CCTC 9 cut(s) 3, 38, 184, 280, 304, 400, 576, 615, 812
MseI TTAA 3 cut(s) 299, 474, 509
MspA1I CMGCKG 1 cut(s) 197
MwoI GCNNNNNNNGC 1 cut(s) 446
NdeII GATC 4 cut(s) 19, 118, 514, 700
NlaIII CATG 1 cut(s) 742
NlaIV GGNNCC 3 cut(s) 21, 516, 589
NmuCI GTSAC 1 cut(s) 868
PaeR7I CTCGAG 1 cut(s) 681
PciSI GCTCTTC 1 cut(s) 195
PfeI GAWTC 1 cut(s) 86
PflMI CCANNNNNTGG 1 cut(s) 383
PkrI GCNGC 3 cut(s) 196, 912, 915
PspN4I GGNNCC 3 cut(s) 21, 516, 589
PspPI GGNCC 1 cut(s) 742
PsuI RGATCY 2 cut(s) 19, 514
PvuII CAGCTG 1 cut(s) 197
RsaI GTAC 2 cut(s) 14, 326
RsaNI GTAC 2 cut(s) 13, 325
SapI GCTCTTC 1 cut(s) 195
SaqAI TTAA 3 cut(s) 299, 474, 509
SatI GCNGC 3 cut(s) 195, 911, 914
Sau3AI GATC 4 cut(s) 19, 118, 514, 700
Sau96I GGNCC 1 cut(s) 742
SduI GDGCHC 2 cut(s) 165, 733
SfcI CTRYAG 1 cut(s) 519
Sfr274I CTCGAG 1 cut(s) 681
SlaI CTCGAG 1 cut(s) 681
SmlI CTYRAG 2 cut(s) 629, 681
SmoI CTYRAG 2 cut(s) 629, 681
SspMI CTAG 2 cut(s) 33, 432
TaaI ACNGT 4 cut(s) 282, 523, 754, 839
TaqI TCGA 1 cut(s) 682
TaqII GACCGA 1 cut(s) 887
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 3 cut(s) 299, 474, 509
Tru9I TTAA 3 cut(s) 299, 474, 509
TscAI CASTG 3 cut(s) 240, 456, 733
TseFI GTSAC 1 cut(s) 868
TseI GCWGC 3 cut(s) 194, 910, 913
Tsp45I GTSAC 1 cut(s) 868
TspDTI ATGAA 3 cut(s) 267, 321, 860
TspRI CASTG 3 cut(s) 240, 456, 733
Van91I CCANNNNNTGG 1 cut(s) 383
XapI RAATTY 3 cut(s) 77, 398, 692
XhoI CTCGAG 1 cut(s) 681
XspI CTAG 2 cut(s) 33, 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.