Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001156

Physical Location & Seq

Genomic Coordinates Forward (+)

4998978 .. 5000818

Gene Structure 1841 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28888

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGACTTGGTGGACTCGTCTACGCCTCTTCCCCCTTGGTTCATTGAGGACGATCTTGAAGCATATGGAAAGTTGTACGAGAAATCTGGTTTCCAAACTGCATTGCAACTTCCATATAGGCAGAAGGTTCGCGGCAGATGGTGGAGCCTGATCGGATCCGTTCAGATCTCGCTGCATTCGCCAGTGCTTATAGCGGAGGACGGCGAAGAGCAGGTAGGGACTGGCTTCGGTGCGTGCAGTGGAGGGCGGTTTAAGGTGCTGATCGACATCGTGACTTCGCCGGTGGTAGGGATCTGCAAGCGGCGACGTGACGGGTTTGGAAGCACGTTGATGTTGGCTGGCCTGTCTGTGCAGCACATGTCGTGGGCCGGGCTCAATGGCTGGAGCTCTTGGGCCTTAATCCGGTGGTGGGCCTGGTTTGGGCCTGATGTATCTTGGGCCTGGGTTCCAGCGCTTATCATAATGGGAAAAAAGAATTATGTATACGAAGTTCCAGGGAAGAAAGATTACATAGACAGTGATCAACTGAAAGAGTTTGTCCCGGATTTGGAAATTGTATTTCTGCCAGAAGGAACATATTTTGTTCATGAACAATTACCTGACCAGGTTAATGATTTTGTTCATGAACAATTACCTAACCAGGTTAATGAGCTCATCGTCACCTTCCTCCGAAAGCACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001676 GO:0002532 GO:0002538 GO:0002539 GO:0003008 GO:0003013 GO:0003674 GO:0003824 GO:0004301 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006954 GO:0007600 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016801 GO:0016803 GO:0019233 GO:0019752 GO:0030258 GO:0032501 GO:0032787 GO:0033559 GO:0042577 GO:0042578 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043651 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045777 GO:0046839 GO:0046872 GO:0050877 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

227

Amino Acids

25.81

Weight (kDa)

5.23

Isoelectric Point (pI)

41.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001156)

Species	Orthologous Gene IDs
malus_domestica	MD09G1161800.v1.1 MD09G1161900.v1.1 MD12G1180400.v1.1 MD14G1068500.v1.1 MD14G1068900.v1.1 MD14G1069100.v1.1 MD14G1070400.v1.1 MD14G1072100.v1.1 MD14G1072300.v1.1 MD14G1072500.v1.1
prunus_persica	Prupe.7G033700_v2.0.a1 Prupe.7G060200_v2.0.a1 Prupe.7G060300_v2.0.a1 Prupe.7G062200_v2.0.a1 Prupe.7G062300_v2.0.a1 Prupe.7G062500_v2.0.a1 Prupe.7G062600_v2.0.a1 Prupe.7G062700_v2.0.a1 Prupe.7G062800_v2.0.a1 Prupe.7G062900_v2.0.a1 Prupe.7G063000_v2.0.a1 Prupe.7G063800_v2.0.a1
pyrus_communis	pycom12g17000 pycom12g17010 pycom14g05670 pycom14g05690 pycom14g05730 pycom14g05810 pycom14g05820 pycom14g05860 pycom14g05900 pycom14g05920 pycom14g05950 pycom14g05960 pycom14g06200
rosa_chinensis	RchiOBHm_Chr3g0482391 RchiOBHm_Chr3g0482451 RchiOBHm_Chr5g0007861
rosa_multiflora	Rmu_sc0002969.1_g000005 Rmu_sc0013521.1_g000002 Rmu_sc0013521.1_g000003 Rmu_sc0021597.1_g000001
rosa_roxburghii	Rroxscaffold_6G00399360
rosa_rugosa	Rorug03G0193500 Rorug03G0195900 Rorug03G0196100
rosa_samantha	Rh1BG172200 Rh2CG271300 Rh3BG282500 Rh3BG282900 Rh3BG283100 Rh3CG279500 Rh3DG275300 Rh3DG275700
rosa_wichuraiana	Rw3G022230 Rw3G022260 Rw3G022280 Rw3G022310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	202
AccI	GTMKAC	2 cut(s)	20, 483
AccII	CGCG	1 cut(s)	132
AciI	CCGC	4 cut(s)	132, 194, 247, 301
AclWI	GGATC	3 cut(s)	150, 163, 299
AfaI	GTAC	1 cut(s)	77
AfeI	AGCGCT	1 cut(s)	453
AfiI	CCNNNNNNNGG	5 cut(s)	287, 402, 409, 420, 547
AflIII	ACRYGT	1 cut(s)	357
AgsI	TTSAA	1 cut(s)	59
AjiI	CACGTC	1 cut(s)	308
AjnI	CCWGG	5 cut(s)	413, 440, 493, 603, 639
AluBI	AGCT	2 cut(s)	387, 652
AluI	AGCT	2 cut(s)	387, 652
Alw21I	GWGCWC	2 cut(s)	389, 654
AlwI	GGATC	3 cut(s)	150, 163, 299
Aor51HI	AGCGCT	1 cut(s)	453
AoxI	GGCC	6 cut(s)	340, 366, 393, 411, 422, 438
ApeKI	GCWGC	2 cut(s)	172, 352
AspLEI	GCGC	1 cut(s)	454
AspS9I	GGNCC	5 cut(s)	366, 393, 411, 422, 438
AsuC2I	CCSGG	2 cut(s)	370, 542
AsuHPI	GGTGA	1 cut(s)	652
BamHI	GGATCC	1 cut(s)	155
BanII	GRGCYC	3 cut(s)	375, 389, 654
BarI	GAAGNNNNNNTAC	2 cut(s)	491, 523
Bbv12I	GWGCWC	2 cut(s)	389, 654
BbvI	GCAGC	2 cut(s)	159, 364
BccI	CCATC	1 cut(s)	132
BceAI	ACGGC	1 cut(s)	217
BcgI	CGANNNNNNTGC	2 cut(s)	110, 144
BciT130I	CCWGG	5 cut(s)	415, 442, 495, 605, 641
BclI	TGATCA	1 cut(s)	520
BcnI	CCSGG	2 cut(s)	370, 542
BfoI	RGCGCY	1 cut(s)	455
BfuAI	ACCTGC	1 cut(s)	202
BglII	AGATCT	1 cut(s)	165
BisI	GCNGC	4 cut(s)	133, 173, 302, 353
BlsI	GCNGC	4 cut(s)	134, 174, 303, 354
Bme1390I	CCNGG	7 cut(s)	370, 415, 442, 495, 542, 605, 641
BmgBI	CACGTC	1 cut(s)	308
BmgT120I	GGNCC	5 cut(s)	366, 393, 411, 422, 438
BmiI	GGNNCC	3 cut(s)	146, 157, 447
BmrFI	CCNGG	7 cut(s)	370, 415, 442, 495, 542, 605, 641
BpmI	CTGGAG	1 cut(s)	403
BpuMI	CCSGG	2 cut(s)	370, 542
BsaBI	GATNNNNATC	1 cut(s)	266
BsaJI	CCNNGG	3 cut(s)	35, 441, 494
BsaWI	WCCGGW	1 cut(s)	402
Bsc4I	CCNNNNNNNGG	5 cut(s)	287, 402, 409, 420, 547
Bse118I	RCCGGY	1 cut(s)	280
Bse1I	ACTGG	2 cut(s)	182, 226
Bse3DI	GCAATG	1 cut(s)	101
Bse8I	GATNNNNATC	1 cut(s)	266
BseBI	CCWGG	5 cut(s)	415, 442, 495, 605, 641
BseDI	CCNNGG	3 cut(s)	35, 441, 494
BseJI	GATNNNNATC	1 cut(s)	266
BseLI	CCNNNNNNNGG	5 cut(s)	287, 402, 409, 420, 547
BseMI	GCAATG	1 cut(s)	101
BseNI	ACTGG	2 cut(s)	182, 226
BseXI	GCAGC	2 cut(s)	159, 364
BsgI	GTGCAG	2 cut(s)	256, 371
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	6 cut(s)	342, 368, 395, 413, 424, 440
BsiHKAI	GWGCWC	2 cut(s)	389, 654
BsiSI	CCGG	4 cut(s)	281, 369, 403, 542
BslFI	GGGAC	2 cut(s)	232, 524
BslI	CCNNNNNNNGG	5 cut(s)	287, 402, 409, 420, 547
BsmFI	GGGAC	2 cut(s)	232, 524
BsmI	GAATGC	1 cut(s)	175
BsnI	GGCC	6 cut(s)	342, 368, 395, 413, 424, 440
Bsp1286I	GDGCHC	3 cut(s)	375, 389, 654
Bsp143I	GATC	7 cut(s)	52, 150, 155, 165, 261, 291, 520
BspACI	CCGC	4 cut(s)	132, 194, 247, 301
BspANI	GGCC	6 cut(s)	342, 368, 395, 413, 424, 440
BspFNI	CGCG	1 cut(s)	132
BspHI	TCATGA	2 cut(s)	586, 622
BspLI	GGNNCC	3 cut(s)	146, 157, 447
BspMI	ACCTGC	1 cut(s)	202
BspPI	GGATC	3 cut(s)	150, 163, 299
BspQI	GCTCTTC	1 cut(s)	201
BsrDI	GCAATG	1 cut(s)	101
BsrFI	RCCGGY	1 cut(s)	280
BsrI	ACTGG	2 cut(s)	182, 226
BssAI	RCCGGY	1 cut(s)	280
BssECI	CCNNGG	3 cut(s)	35, 441, 494
BssMI	GATC	7 cut(s)	52, 150, 155, 165, 261, 291, 520
BssNAI	GTATAC	1 cut(s)	484
BssT1I	CCWWGG	1 cut(s)	35
Bst1107I	GTATAC	1 cut(s)	484
Bst2UI	CCWGG	5 cut(s)	415, 442, 495, 605, 641
Bst4CI	ACNGT	1 cut(s)	518
Bst6I	CTCTTC	2 cut(s)	33, 201
BstC8I	GCNNGC	3 cut(s)	235, 299, 340
BstFNI	CGCG	1 cut(s)	132
BstH2I	RGCGCY	1 cut(s)	455
BstHHI	GCGC	1 cut(s)	454
BstKTI	GATC	7 cut(s)	55, 153, 158, 168, 264, 294, 523
BstMBI	GATC	7 cut(s)	52, 150, 155, 165, 261, 291, 520
BstMWI	GCNNNNNNNGC	1 cut(s)	178
BstNI	CCWGG	5 cut(s)	415, 442, 495, 605, 641
BstNSI	RCATGY	1 cut(s)	361
BstSCI	CCNGG	7 cut(s)	368, 413, 440, 493, 540, 603, 639
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	2 cut(s)	159, 364
BstX2I	RGATCY	3 cut(s)	155, 165, 291
BstYI	RGATCY	3 cut(s)	155, 165, 291
BstZ17I	GTATAC	1 cut(s)	484
BsuRI	GGCC	6 cut(s)	342, 368, 395, 413, 424, 440
BtrI	CACGTC	1 cut(s)	308
BtsI	GCAGTG	1 cut(s)	244
BtsIMutI	CAGTG	3 cut(s)	189, 244, 523
BveI	ACCTGC	1 cut(s)	202
Cac8I	GCNNGC	3 cut(s)	235, 299, 340
CciI	TCATGA	2 cut(s)	586, 622
CfoI	GCGC	1 cut(s)	454
Cfr10I	RCCGGY	1 cut(s)	280
Cfr13I	GGNCC	5 cut(s)	366, 393, 411, 422, 438
CsiI	ACCWGGT	2 cut(s)	603, 639
Csp6I	GTAC	1 cut(s)	76
CviAII	CATG	3 cut(s)	358, 587, 623
CviQI	GTAC	1 cut(s)	76
DpnI	GATC	7 cut(s)	54, 152, 157, 167, 263, 293, 522
DpnII	GATC	7 cut(s)	52, 150, 155, 165, 261, 291, 520
Eam1104I	CTCTTC	2 cut(s)	33, 201
EarI	CTCTTC	2 cut(s)	33, 201
Ecl136II	GAGCTC	2 cut(s)	387, 652
Eco130I	CCWWGG	1 cut(s)	35
Eco24I	GRGCYC	3 cut(s)	375, 389, 654
Eco47III	AGCGCT	1 cut(s)	453
Eco53kI	GAGCTC	2 cut(s)	387, 652
EcoICRI	GAGCTC	2 cut(s)	387, 652
EcoRII	CCWGG	5 cut(s)	413, 440, 493, 603, 639
EcoT14I	CCWWGG	1 cut(s)	35
EcoT38I	GRGCYC	3 cut(s)	375, 389, 654
ErhI	CCWWGG	1 cut(s)	35
FaeI	CATG	3 cut(s)	361, 590, 626
FaqI	GGGAC	2 cut(s)	232, 524
FatI	CATG	3 cut(s)	357, 586, 622
FauNDI	CATATG	1 cut(s)	64
FbaI	TGATCA	1 cut(s)	520
FblI	GTMKAC	2 cut(s)	20, 483
Fnu4HI	GCNGC	4 cut(s)	133, 173, 302, 353
FriOI	GRGCYC	3 cut(s)	375, 389, 654
Fsp4HI	GCNGC	4 cut(s)	133, 173, 302, 353
GlaI	GCGC	1 cut(s)	453
GluI	GCNGC	4 cut(s)	133, 173, 302, 353
GsuI	CTGGAG	1 cut(s)	403
HaeII	RGCGCY	1 cut(s)	455
HaeIII	GGCC	6 cut(s)	342, 368, 395, 413, 424, 440
HapII	CCGG	4 cut(s)	281, 369, 403, 542
HhaI	GCGC	1 cut(s)	454
Hin1II	CATG	3 cut(s)	361, 590, 626
Hin6I	GCGC	1 cut(s)	452
HinP1I	GCGC	1 cut(s)	452
HinfI	GANTC	1 cut(s)	14
HpaII	CCGG	4 cut(s)	281, 369, 403, 542
HphI	GGTGA	1 cut(s)	652
Hpy166II	GTNNAC	3 cut(s)	13, 21, 484
Hpy188I	TCNGA	3 cut(s)	155, 165, 671
Hpy188III	TCNNGA	4 cut(s)	56, 271, 587, 623
Hpy8I	GTNNAC	3 cut(s)	13, 21, 484
Hpy99I	CGWCG	1 cut(s)	309
HpyAV	CCTTC	3 cut(s)	118, 563, 673
HpyCH4III	ACNGT	1 cut(s)	518
HpyCH4IV	ACGT	2 cut(s)	307, 326
HpyCH4V	TGCA	6 cut(s)	101, 106, 175, 237, 297, 352
HpyF10VI	GCNNNNNNNGC	1 cut(s)	178
HpySE526I	ACGT	2 cut(s)	307, 326
Hsp92II	CATG	3 cut(s)	361, 590, 626
HspAI	GCGC	1 cut(s)	452
Ksp22I	TGATCA	1 cut(s)	520
Kzo9I	GATC	7 cut(s)	52, 150, 155, 165, 261, 291, 520
LguI	GCTCTTC	1 cut(s)	201
LmnI	GCTCC	2 cut(s)	144, 384
Lsp1109I	GCAGC	2 cut(s)	159, 364
MabI	ACCWGGT	2 cut(s)	603, 639
MaeII	ACGT	2 cut(s)	307, 326
MaeIII	GTNAC	3 cut(s)	271, 308, 658
MalI	GATC	7 cut(s)	54, 152, 157, 167, 263, 293, 522
MboI	GATC	7 cut(s)	52, 150, 155, 165, 261, 291, 520
MboII	GAAGA	3 cut(s)	20, 218, 511
MflI	RGATCY	3 cut(s)	155, 165, 291
MhlI	GDGCHC	3 cut(s)	375, 389, 654
MluCI	AATT	4 cut(s)	475, 552, 593, 629
MlyI	GAGTC	1 cut(s)	8
MnlI	CCTC	5 cut(s)	36, 40, 190, 236, 677
MseI	TTAA	4 cut(s)	252, 398, 609, 645
MslI	CAYNNNNRTG	1 cut(s)	329
MspI	CCGG	4 cut(s)	281, 369, 403, 542
MspR9I	CCNGG	7 cut(s)	370, 415, 442, 495, 542, 605, 641
Mva1269I	GAATGC	1 cut(s)	175
MvaI	CCWGG	5 cut(s)	415, 442, 495, 605, 641
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	1 cut(s)	178
NciI	CCSGG	2 cut(s)	370, 542
NdeI	CATATG	1 cut(s)	64
NdeII	GATC	7 cut(s)	52, 150, 155, 165, 261, 291, 520
NlaIII	CATG	3 cut(s)	361, 590, 626
NlaIV	GGNNCC	3 cut(s)	146, 157, 447
NmuCI	GTSAC	3 cut(s)	271, 308, 658
NspI	RCATGY	1 cut(s)	361
PagI	TCATGA	2 cut(s)	586, 622
PciI	ACATGT	1 cut(s)	357
PciSI	GCTCTTC	1 cut(s)	201
PctI	GAATGC	1 cut(s)	175
PfoI	TCCNGGA	1 cut(s)	540
PkrI	GCNGC	4 cut(s)	134, 174, 303, 354
PleI	GAGTC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	8
PscI	ACATGT	1 cut(s)	357
Psp124BI	GAGCTC	2 cut(s)	389, 654
Psp6I	CCWGG	5 cut(s)	413, 440, 493, 603, 639
PspGI	CCWGG	5 cut(s)	413, 440, 493, 603, 639
PspN4I	GGNNCC	3 cut(s)	146, 157, 447
PspPI	GGNCC	5 cut(s)	366, 393, 411, 422, 438
PsrI	GAACNNNNNNTAC	2 cut(s)	474, 506
PsuI	RGATCY	3 cut(s)	155, 165, 291
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
RseI	CAYNNNNRTG	1 cut(s)	329
SacI	GAGCTC	2 cut(s)	389, 654
SapI	GCTCTTC	1 cut(s)	201
SaqAI	TTAA	4 cut(s)	252, 398, 609, 645
SatI	GCNGC	4 cut(s)	133, 173, 302, 353
Sau3AI	GATC	7 cut(s)	52, 150, 155, 165, 261, 291, 520
Sau96I	GGNCC	5 cut(s)	366, 393, 411, 422, 438
SchI	GAGTC	1 cut(s)	8
ScrFI	CCNGG	7 cut(s)	370, 415, 442, 495, 542, 605, 641
SduI	GDGCHC	3 cut(s)	375, 389, 654
SexAI	ACCWGGT	2 cut(s)	603, 639
SgrAI	CRCCGGYG	1 cut(s)	280
SmiMI	CAYNNNNRTG	1 cut(s)	329
Sse9I	AATT	4 cut(s)	475, 552, 593, 629
SsiI	CCGC	4 cut(s)	132, 194, 247, 301
SstI	GAGCTC	2 cut(s)	389, 654
StyD4I	CCNGG	7 cut(s)	368, 413, 440, 493, 540, 603, 639
StyI	CCWWGG	1 cut(s)	35
TaaI	ACNGT	1 cut(s)	518
TaiI	ACGT	2 cut(s)	310, 329
TaqI	TCGA	1 cut(s)	264
TasI	AATT	4 cut(s)	475, 552, 593, 629
TauI	GCSGC	2 cut(s)	135, 304
Tru1I	TTAA	4 cut(s)	252, 398, 609, 645
Tru9I	TTAA	4 cut(s)	252, 398, 609, 645
TscAI	CASTG	3 cut(s)	189, 244, 523
TseFI	GTSAC	3 cut(s)	271, 308, 658
TseI	GCWGC	2 cut(s)	172, 352
Tsp45I	GTSAC	3 cut(s)	271, 308, 658
TspDTI	ATGAA	5 cut(s)	31, 575, 603, 611, 639
TspGWI	ACGGA	1 cut(s)	148
TspRI	CASTG	3 cut(s)	189, 244, 523
XceI	RCATGY	1 cut(s)	361
XmiI	GTMKAC	2 cut(s)	20, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.