Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013521.1

Orthogroup ID

OG0001156

Physical Location & Seq

Genomic Coordinates Reverse (-)

3204 .. 3824

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013521.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atgagcaagttgatcagcctcagattgcttatgatgacgacgaaagaagcatgttttcaagacaatggagtgggatgtttgaaatcacttcggtttctcgcgattgtaaattgtggtaatttaatctctttgccccgcgagattaattatctcgctgcattgcgtactttgatattagctgattgtgagcaactcgatctggtgagccaacattatcaagcaattccattgaggctcgaaaagttggttatttatgtactaccacggatcacggagttgcctgaatggcttcgaggagctgccagcaccctacagcacctgcacattcaattttgtcccaatttgggttcattaccagggtggctcacaaatctaacatcacttaaaaagcttgtcctcattgattgccccaaattgttgtcacttccagaagggatggagcgtctcactgccttgagagacttgaagatagaagattgtcccgagttggagagaagatgcaagcgtgacactggtgaagattggccaaagattgctcgtattccaaacctttctatatcagactgtgaagagtcagattctgaagagtcagattctgaagtgtcagactctgaagagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

206

Amino Acids

23.29

Weight (kDa)

5.04

Isoelectric Point (pI)

52.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001156)

Species	Orthologous Gene IDs
malus_domestica	MD09G1161800.v1.1 MD09G1161900.v1.1 MD12G1180400.v1.1 MD14G1068500.v1.1 MD14G1068900.v1.1 MD14G1069100.v1.1 MD14G1070400.v1.1 MD14G1072100.v1.1 MD14G1072300.v1.1 MD14G1072500.v1.1
prunus_persica	Prupe.7G033700_v2.0.a1 Prupe.7G060200_v2.0.a1 Prupe.7G060300_v2.0.a1 Prupe.7G062200_v2.0.a1 Prupe.7G062300_v2.0.a1 Prupe.7G062500_v2.0.a1 Prupe.7G062600_v2.0.a1 Prupe.7G062700_v2.0.a1 Prupe.7G062800_v2.0.a1 Prupe.7G062900_v2.0.a1 Prupe.7G063000_v2.0.a1 Prupe.7G063800_v2.0.a1
pyrus_communis	pycom12g17000 pycom12g17010 pycom14g05670 pycom14g05690 pycom14g05730 pycom14g05810 pycom14g05820 pycom14g05860 pycom14g05900 pycom14g05920 pycom14g05950 pycom14g05960 pycom14g06200
rosa_chinensis	RchiOBHm_Chr3g0482391 RchiOBHm_Chr3g0482451 RchiOBHm_Chr5g0007861
rosa_multiflora	Rmu_sc0002969.1_g000005 Rmu_sc0013521.1_g000002 Rmu_sc0013521.1_g000003 Rmu_sc0021597.1_g000001
rosa_roxburghii	Rroxscaffold_6G00399360
rosa_rugosa	Rorug03G0193500 Rorug03G0195900 Rorug03G0196100
rosa_samantha	Rh1BG172200 Rh2CG271300 Rh3BG282500 Rh3BG282900 Rh3BG283100 Rh3CG279500 Rh3DG275300 Rh3DG275700
rosa_wichuraiana	Rw3G022230 Rw3G022260 Rw3G022280 Rw3G022310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	327
Acc36I	ACCTGC	1 cut(s)	327
AccII	CGCG	2 cut(s)	101, 138
AciI	CCGC	1 cut(s)	136
AclWI	GGATC	1 cut(s)	275
AcoI	YGGCCR	1 cut(s)	524
AcuI	CTGAAG	2 cut(s)	603, 618
AfaI	GTAC	2 cut(s)	166, 258
AfiI	CCNNNNNNNGG	1 cut(s)	344
AgsI	TTSAA	4 cut(s)	59, 82, 329, 466
AjnI	CCWGG	1 cut(s)	355
AluBI	AGCT	3 cut(s)	179, 299, 391
AluI	AGCT	3 cut(s)	179, 299, 391
Alw26I	GTCTC	2 cut(s)	449, 453
AlwI	GGATC	1 cut(s)	275
AlwNI	CAGNNNCTG	4 cut(s)	319, 581, 596, 611
Ama87I	CYCGRG	1 cut(s)	482
AoxI	GGCC	1 cut(s)	524
ApeKI	GCWGC	2 cut(s)	155, 299
AseI	ATTAAT	1 cut(s)	144
Asp700I	GAANNNNTTC	1 cut(s)	288
AsuHPI	GGTGA	2 cut(s)	214, 527
AvaI	CYCGRG	1 cut(s)	482
BalI	TGGCCA	1 cut(s)	526
BbvI	GCAGC	2 cut(s)	142, 286
BccI	CCATC	1 cut(s)	430
BciT130I	CCWGG	1 cut(s)	357
BclI	TGATCA	1 cut(s)	12
BcoDI	GTCTC	2 cut(s)	449, 453
BfmI	CTRYAG	1 cut(s)	311
BfuAI	ACCTGC	1 cut(s)	327
BglI	GCCNNNNNGGC	1 cut(s)	286
BisI	GCNGC	2 cut(s)	156, 300
BlsI	GCNGC	2 cut(s)	157, 301
Bme1390I	CCNGG	1 cut(s)	357
BmeT110I	CYCGRG	1 cut(s)	482
BmrFI	CCNGG	1 cut(s)	357
BmsI	GCATC	1 cut(s)	488
BpuEI	CTTGAG	1 cut(s)	475
BsaJI	CCNNGG	2 cut(s)	263, 356
Bsc4I	CCNNNNNNNGG	1 cut(s)	344
Bse1I	ACTGG	1 cut(s)	517
Bse3DI	GCAATG	1 cut(s)	158
BseBI	CCWGG	1 cut(s)	357
BseDI	CCNNGG	2 cut(s)	263, 356
BseGI	GGATG	2 cut(s)	80, 441
BseLI	CCNNNNNNNGG	1 cut(s)	344
BseMI	GCAATG	1 cut(s)	158
BseMII	CTCAG	1 cut(s)	34
BseNI	ACTGG	1 cut(s)	517
BseRI	GAGGAG	1 cut(s)	309
BseXI	GCAGC	2 cut(s)	142, 286
BsgI	GTGCAG	1 cut(s)	305
Bsh1236I	CGCG	2 cut(s)	101, 138
BshFI	GGCC	1 cut(s)	526
BsiHKCI	CYCGRG	1 cut(s)	482
BslFI	GGGAC	2 cut(s)	321, 465
BslI	CCNNNNNNNGG	1 cut(s)	344
BsmAI	GTCTC	2 cut(s)	449, 453
BsmBI	CGTCTC	1 cut(s)	449
BsmFI	GGGAC	2 cut(s)	321, 465
BsnI	GGCC	1 cut(s)	526
BsoBI	CYCGRG	1 cut(s)	482
Bsp143I	GATC	3 cut(s)	12, 196, 267
Bsp68I	TCGCGA	1 cut(s)	101
BspACI	CCGC	1 cut(s)	136
BspANI	GGCC	1 cut(s)	526
BspCNI	CTCAG	1 cut(s)	33
BspFNI	CGCG	2 cut(s)	101, 138
BspMI	ACCTGC	1 cut(s)	327
BspPI	GGATC	1 cut(s)	275
BsrDI	GCAATG	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	517
BssECI	CCNNGG	2 cut(s)	263, 356
BssMI	GATC	3 cut(s)	12, 196, 267
Bst2UI	CCWGG	1 cut(s)	357
Bst4CI	ACNGT	1 cut(s)	566
Bst6I	CTCTTC	3 cut(s)	564, 579, 609
BstC8I	GCNNGC	2 cut(s)	304, 503
BstDEI	CTNAG	1 cut(s)	20
BstDSI	CCRYGG	1 cut(s)	263
BstF5I	GGATG	2 cut(s)	80, 441
BstFNI	CGCG	2 cut(s)	101, 138
BstKTI	GATC	3 cut(s)	15, 199, 270
BstMAI	GTCTC	2 cut(s)	449, 453
BstMBI	GATC	3 cut(s)	12, 196, 267
BstMWI	GCNNNNNNNGC	1 cut(s)	286
BstNI	CCWGG	1 cut(s)	357
BstNSI	RCATGY	1 cut(s)	54
BstSCI	CCNGG	1 cut(s)	355
BstSFI	CTRYAG	1 cut(s)	311
BstUI	CGCG	2 cut(s)	101, 138
BstV1I	GCAGC	2 cut(s)	142, 286
BsuRI	GGCC	1 cut(s)	526
BtgI	CCRYGG	1 cut(s)	263
BtsCI	GGATG	2 cut(s)	80, 441
BtsI	GCAGTG	1 cut(s)	447
BtsIMutI	CAGTG	2 cut(s)	447, 510
BtuMI	TCGCGA	1 cut(s)	101
BveI	ACCTGC	1 cut(s)	327
Cac8I	GCNNGC	2 cut(s)	304, 503
CaiI	CAGNNNCTG	4 cut(s)	319, 581, 596, 611
CseI	GACGC	1 cut(s)	431
Csp6I	GTAC	2 cut(s)	165, 257
CviAII	CATG	1 cut(s)	51
CviJI	RGCY	9 cut(s)	18, 179, 207, 235, 289, 299, 364, 391, 526
CviKI_1	RGCY	9 cut(s)	18, 179, 207, 235, 289, 299, 364, 391, 526
CviQI	GTAC	2 cut(s)	165, 257
DdeI	CTNAG	1 cut(s)	20
DpnI	GATC	3 cut(s)	14, 198, 269
DpnII	GATC	3 cut(s)	12, 196, 267
EaeI	YGGCCR	1 cut(s)	524
Eam1104I	CTCTTC	3 cut(s)	564, 579, 609
EarI	CTCTTC	3 cut(s)	564, 579, 609
Eco57I	CTGAAG	2 cut(s)	603, 618
Eco88I	CYCGRG	1 cut(s)	482
EcoRII	CCWGG	1 cut(s)	355
Esp3I	CGTCTC	1 cut(s)	449
FaeI	CATG	1 cut(s)	54
FaiI	YATR	4 cut(s)	32, 52, 255, 557
FaqI	GGGAC	2 cut(s)	321, 465
FatI	CATG	1 cut(s)	50
FauI	CCCGC	1 cut(s)	143
FbaI	TGATCA	1 cut(s)	12
Fnu4HI	GCNGC	2 cut(s)	156, 300
FokI	GGATG	2 cut(s)	87, 448
Fsp4HI	GCNGC	2 cut(s)	156, 300
GluI	GCNGC	2 cut(s)	156, 300
HaeIII	GGCC	1 cut(s)	526
HgaI	GACGC	1 cut(s)	431
Hin1II	CATG	1 cut(s)	54
HindIII	AAGCTT	1 cut(s)	389
HinfI	GANTC	5 cut(s)	572, 578, 587, 593, 608
HphI	GGTGA	2 cut(s)	214, 527
Hpy188I	TCNGA	8 cut(s)	23, 562, 577, 583, 592, 598, 607, 613
Hpy188III	TCNNGA	4 cut(s)	59, 100, 428, 482
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	1 cut(s)	425
HpyCH4III	ACNGT	1 cut(s)	566
HpyCH4V	TGCA	3 cut(s)	158, 322, 501
HpyF10VI	GCNNNNNNNGC	1 cut(s)	286
HpyF3I	CTNAG	1 cut(s)	20
Hsp92II	CATG	1 cut(s)	54
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	3 cut(s)	12, 196, 267
LmnI	GCTCC	2 cut(s)	296, 439
LpnPI	CCDG	8 cut(s)	185, 294, 316, 332, 342, 369, 441, 498
Lsp1109I	GCAGC	2 cut(s)	142, 286
LweI	GCATC	1 cut(s)	488
MaeIII	GTNAC	2 cut(s)	420, 506
MalI	GATC	3 cut(s)	14, 198, 269
MboI	GATC	3 cut(s)	12, 196, 267
MboII	GAAGA	6 cut(s)	478, 485, 507, 530, 581, 596
MlsI	TGGCCA	1 cut(s)	526
MluCI	AATT	7 cut(s)	109, 118, 145, 222, 329, 340, 413
MluNI	TGGCCA	1 cut(s)	526
MlyI	GAGTC	3 cut(s)	581, 596, 602
MmeI	TCCRAC	1 cut(s)	468
MnlI	CCTC	4 cut(s)	29, 225, 287, 407
Mox20I	TGGCCA	1 cut(s)	526
MroXI	GAANNNNTTC	1 cut(s)	288
MscI	TGGCCA	1 cut(s)	526
MseI	TTAA	3 cut(s)	122, 144, 384
Msp20I	TGGCCA	1 cut(s)	526
MspR9I	CCNGG	1 cut(s)	357
MvaI	CCWGG	1 cut(s)	357
MvnI	CGCG	2 cut(s)	101, 138
MwoI	GCNNNNNNNGC	1 cut(s)	286
NdeII	GATC	3 cut(s)	12, 196, 267
NlaIII	CATG	1 cut(s)	54
NmuCI	GTSAC	2 cut(s)	420, 506
NruI	TCGCGA	1 cut(s)	101
NspI	RCATGY	1 cut(s)	54
PaqCI	CACCTGC	1 cut(s)	327
PdmI	GAANNNNTTC	1 cut(s)	288
PfeI	GAWTC	2 cut(s)	578, 593
PkrI	GCNGC	2 cut(s)	157, 301
PleI	GAGTC	3 cut(s)	580, 595, 602
PpsI	GAGTC	3 cut(s)	580, 595, 602
PshBI	ATTAAT	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	355
PstNI	CAGNNNCTG	4 cut(s)	319, 581, 596, 611
RruI	TCGCGA	1 cut(s)	101
RsaI	GTAC	2 cut(s)	166, 258
RsaNI	GTAC	2 cut(s)	165, 257
SaqAI	TTAA	3 cut(s)	122, 144, 384
SatI	GCNGC	2 cut(s)	156, 300
Sau3AI	GATC	3 cut(s)	12, 196, 267
SchI	GAGTC	3 cut(s)	581, 596, 602
ScrFI	CCNGG	1 cut(s)	357
SetI	ASST	5 cut(s)	181, 301, 321, 393, 552
SfaNI	GCATC	1 cut(s)	488
SfcI	CTRYAG	1 cut(s)	311
SmlI	CTYRAG	1 cut(s)	454
SmoI	CTYRAG	1 cut(s)	454
Sse9I	AATT	7 cut(s)	109, 118, 145, 222, 329, 340, 413
SsiI	CCGC	1 cut(s)	136
StyD4I	CCNGG	1 cut(s)	355
TaaI	ACNGT	1 cut(s)	566
TaqI	TCGA	3 cut(s)	195, 237, 292
TasI	AATT	7 cut(s)	109, 118, 145, 222, 329, 340, 413
TatI	WGTACW	1 cut(s)	256
TfiI	GAWTC	2 cut(s)	578, 593
Tru1I	TTAA	3 cut(s)	122, 144, 384
Tru9I	TTAA	3 cut(s)	122, 144, 384
TscAI	CASTG	2 cut(s)	454, 517
TseFI	GTSAC	2 cut(s)	420, 506
TseI	GCWGC	2 cut(s)	155, 299
Tsp45I	GTSAC	2 cut(s)	420, 506
TspDTI	ATGAA	1 cut(s)	339
TspGWI	ACGGA	2 cut(s)	280, 287
TspRI	CASTG	2 cut(s)	454, 517
VspI	ATTAAT	1 cut(s)	144
XceI	RCATGY	1 cut(s)	54
XmnI	GAANNNNTTC	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.