Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001156

Physical Location & Seq

Genomic Coordinates Reverse (-)

13069784 .. 13070743

Gene Structure 960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1161900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCCGAGCTTGCATTTCCGTTGGCAGCCAAACTCATTGAAAGGCTCAGCTCCATTGCTTCTGAGGAGATTTGCTTGGCGTGGGGCGTTCAAGCGGATCTGCGGAAACTTGAACGCACCATGTCCACCATCAGAGACGTGCTCTTGGATGCCGAAGAGAAGCAAGCACGTAACCGTGACCTACGCAGTTGGCTACGACAACTTAAAGATGTGTTCCTTGATGCGGAGGATCTGATGGACGAGTTTGAGTGCGAAGCTTTGCGAAGGCAAGTGGTTCGTGGCAGTGGCACAACCAGAAAGGTACGCCGTTTCTTTTCCCGCTCTAATCCAGTTGCATTCCGGTTGCGAGTAGGTCATGAAATTAAGGACATACGAGAGAGGTTACATGAGCTTAAAGATGATAATTTTGCTGGTCTTCGCACTGTTCATCATCACCCTCATCTAGGTGATCATGTGAGGGAGAACATGAATACGACCCACTCATTTGTCCGTGCTTCGGAGGTTATTGGTAGAGAAACAGAAAAAAATAAAATTGTTGATCTTCTAATGATACAAGGCGATGATCATCAAGGTGGGGATAATGGCCGGAATGTTTCTGTTATTCCTATAGTGGGATTAGGAGGTTTAGGGAAGACCACCCTTGTCCAGTCGGTGTACAATGATCTGAGAGTCGAAAGGAGTTTTGACTTAAGAATGTGGCAGCATGTGTCAGTGGACTTTGATGTTAATAGATTGGCAAAAGAGATCCTTGGCTCTGCATTAGGTACACAGATCAGTGAAAGGTTGTCTCTAGATCAGTTGCAAGCACAACTACGAGACGCTTTAAAGGATAAGAAATTTCTGCTCGTCTTGGATGATGTGTGGAACGAAGATCGTACCAAATGGACCGGGTTGAGAAATTTATTGATAGAGGGGGCCAAGGTAGGAACTAAGGTTTTGGTGACGACACGGAATAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

320

Amino Acids

36.49

Weight (kDa)

7.86

Isoelectric Point (pI)

38.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	11 - 99	7.7e-25	Rx N-terminal domain
NB-ARC	PF00931	195 - 318	1.8e-24	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001156)

Species	Orthologous Gene IDs
malus_domestica	MD09G1161800.v1.1 MD09G1161900.v1.1 MD12G1180400.v1.1 MD14G1068500.v1.1 MD14G1068900.v1.1 MD14G1069100.v1.1 MD14G1070400.v1.1 MD14G1072100.v1.1 MD14G1072300.v1.1 MD14G1072500.v1.1
prunus_persica	Prupe.7G033700_v2.0.a1 Prupe.7G060200_v2.0.a1 Prupe.7G060300_v2.0.a1 Prupe.7G062200_v2.0.a1 Prupe.7G062300_v2.0.a1 Prupe.7G062500_v2.0.a1 Prupe.7G062600_v2.0.a1 Prupe.7G062700_v2.0.a1 Prupe.7G062800_v2.0.a1 Prupe.7G062900_v2.0.a1 Prupe.7G063000_v2.0.a1 Prupe.7G063800_v2.0.a1
pyrus_communis	pycom12g17000 pycom12g17010 pycom14g05670 pycom14g05690 pycom14g05730 pycom14g05810 pycom14g05820 pycom14g05860 pycom14g05900 pycom14g05920 pycom14g05950 pycom14g05960 pycom14g06200
rosa_chinensis	RchiOBHm_Chr3g0482391 RchiOBHm_Chr3g0482451 RchiOBHm_Chr5g0007861
rosa_multiflora	Rmu_sc0002969.1_g000005 Rmu_sc0013521.1_g000002 Rmu_sc0013521.1_g000003 Rmu_sc0021597.1_g000001
rosa_roxburghii	Rroxscaffold_6G00399360
rosa_rugosa	Rorug03G0193500 Rorug03G0195900 Rorug03G0196100
rosa_samantha	Rh1BG172200 Rh2CG271300 Rh3BG282500 Rh3BG282900 Rh3BG283100 Rh3CG279500 Rh3DG275300 Rh3DG275700
rosa_wichuraiana	Rw3G022230 Rw3G022260 Rw3G022280 Rw3G022310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	321
AciI	CCGC	4 cut(s)	95, 103, 224, 319
AclWI	GGATC	3 cut(s)	105, 237, 739
AcoI	YGGCCR	2 cut(s)	3, 583
AcsI	RAATTY	2 cut(s)	836, 898
AfaI	GTAC	4 cut(s)	303, 656, 766, 877
AfiI	CCNNNNNNNGG	4 cut(s)	223, 443, 496, 611
AflII	CTTAAG	1 cut(s)	688
AgsI	TTSAA	3 cut(s)	41, 92, 113
AjiI	CACGTC	1 cut(s)	139
AluBI	AGCT	5 cut(s)	10, 51, 257, 391, 957
AluI	AGCT	5 cut(s)	10, 51, 257, 391, 957
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	3 cut(s)	129, 792, 810
AlwI	GGATC	3 cut(s)	105, 237, 739
AoxI	GGCC	3 cut(s)	3, 583, 915
ApeKI	GCWGC	2 cut(s)	26, 700
ApoI	RAATTY	2 cut(s)	836, 898
AspS9I	GGNCC	2 cut(s)	885, 915
AsuC2I	CCSGG	1 cut(s)	889
AsuHPI	GGTGA	3 cut(s)	425, 458, 952
AvaII	GGWCC	1 cut(s)	885
BbsI	GAAGAC	2 cut(s)	407, 638
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	2 cut(s)	38, 712
BccI	CCATC	2 cut(s)	137, 229
BceAI	ACGGC	1 cut(s)	291
BcgI	CGANNNNNNTGC	2 cut(s)	257, 291
BclI	TGATCA	2 cut(s)	448, 562
BcnI	CCSGG	1 cut(s)	889
BcoDI	GTCTC	3 cut(s)	129, 792, 810
BfaI	CTAG	2 cut(s)	443, 791
BfmI	CTRYAG	1 cut(s)	606
BfrI	CTTAAG	1 cut(s)	688
BisI	GCNGC	2 cut(s)	27, 701
BlpI	GCTNAGC	1 cut(s)	47
BlsI	GCNGC	2 cut(s)	28, 702
Bme1390I	CCNGG	1 cut(s)	889
Bme18I	GGWCC	1 cut(s)	885
BmgBI	CACGTC	1 cut(s)	139
BmgT120I	GGNCC	2 cut(s)	885, 915
BmiI	GGNNCC	1 cut(s)	916
BmrFI	CCNGG	1 cut(s)	889
BmsI	GCATC	2 cut(s)	139, 211
BpiI	GAAGAC	2 cut(s)	407, 638
BplI	GAGNNNNNCTC	2 cut(s)	126, 158
Bpu1102I	GCTNAGC	1 cut(s)	47
BpuMI	CCSGG	1 cut(s)	889
BsaAI	YACGTR	1 cut(s)	170
BsaBI	GATNNNNATC	1 cut(s)	564
BsaJI	CCNNGG	2 cut(s)	748, 918
BsaWI	WCCGGW	1 cut(s)	339
Bsc4I	CCNNNNNNNGG	4 cut(s)	223, 443, 496, 611
Bse1I	ACTGG	2 cut(s)	329, 646
Bse3DI	GCAATG	1 cut(s)	54
Bse8I	GATNNNNATC	1 cut(s)	564
BseDI	CCNNGG	2 cut(s)	748, 918
BseGI	GGATG	2 cut(s)	154, 859
BseJI	GATNNNNATC	1 cut(s)	564
BseLI	CCNNNNNNNGG	4 cut(s)	223, 443, 496, 611
BseMI	GCAATG	1 cut(s)	54
BseMII	CTCAG	3 cut(s)	54, 61, 656
BseNI	ACTGG	2 cut(s)	329, 646
BseRI	GAGGAG	1 cut(s)	80
BseXI	GCAGC	2 cut(s)	38, 712
BshFI	GGCC	3 cut(s)	5, 585, 917
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	3 cut(s)	340, 586, 888
BslI	CCNNNNNNNGG	4 cut(s)	223, 443, 496, 611
BsmAI	GTCTC	3 cut(s)	129, 792, 810
BsmBI	CGTCTC	2 cut(s)	129, 810
BsmI	GAATGC	1 cut(s)	335
BsnI	GGCC	3 cut(s)	5, 585, 917
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp1407I	TGTACA	1 cut(s)	654
Bsp1720I	GCTNAGC	1 cut(s)	47
BspACI	CCGC	4 cut(s)	95, 103, 224, 319
BspANI	GGCC	3 cut(s)	5, 585, 917
BspCNI	CTCAG	3 cut(s)	55, 60, 657
BspHI	TCATGA	1 cut(s)	355
BspLI	GGNNCC	1 cut(s)	916
BspPI	GGATC	3 cut(s)	105, 237, 739
BspTI	CTTAAG	1 cut(s)	688
BsrBI	CCGCTC	1 cut(s)	321
BsrDI	GCAATG	1 cut(s)	54
BsrGI	TGTACA	1 cut(s)	654
BsrI	ACTGG	2 cut(s)	329, 646
BssECI	CCNNGG	2 cut(s)	748, 918
BssT1I	CCWWGG	2 cut(s)	748, 918
Bst4CI	ACNGT	2 cut(s)	176, 424
Bst6I	CTCTTC	1 cut(s)	150
BstAFI	CTTAAG	1 cut(s)	688
BstAUI	TGTACA	1 cut(s)	654
BstBAI	YACGTR	1 cut(s)	170
BstC8I	GCNNGC	3 cut(s)	12, 165, 804
BstDEI	CTNAG	4 cut(s)	47, 63, 665, 930
BstENI	CCTNNNNNAGG	1 cut(s)	441
BstF5I	GGATG	2 cut(s)	154, 859
BstMAI	GTCTC	3 cut(s)	129, 792, 810
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNSI	RCATGY	1 cut(s)	707
BstSCI	CCNGG	1 cut(s)	887
BstSFI	CTRYAG	1 cut(s)	606
BstV1I	GCAGC	2 cut(s)	38, 712
BstV2I	GAAGAC	2 cut(s)	407, 638
BstX2I	RGATCY	3 cut(s)	97, 229, 744
BstYI	RGATCY	3 cut(s)	97, 229, 744
BsuRI	GGCC	3 cut(s)	5, 585, 917
BtgZI	GCGATG	1 cut(s)	573
BtrI	CACGTC	1 cut(s)	139
BtsCI	GGATG	2 cut(s)	154, 859
BtsI	GCAGTG	1 cut(s)	289
BtsIMutI	CAGTG	4 cut(s)	289, 420, 717, 781
Cac8I	GCNNGC	3 cut(s)	12, 165, 804
CciI	TCATGA	1 cut(s)	355
Cfr13I	GGNCC	2 cut(s)	885, 915
CseI	GACGC	1 cut(s)	827
Csp6I	GTAC	4 cut(s)	302, 655, 765, 876
CviAII	CATG	6 cut(s)	121, 356, 386, 452, 466, 704
CviQI	GTAC	4 cut(s)	302, 655, 765, 876
DdeI	CTNAG	4 cut(s)	47, 63, 665, 930
DraI	TTTAAA	1 cut(s)	825
EaeI	YGGCCR	2 cut(s)	3, 583
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Eco130I	CCWWGG	2 cut(s)	748, 918
Eco47I	GGWCC	1 cut(s)	885
EcoNI	CCTNNNNNAGG	1 cut(s)	441
EcoT14I	CCWWGG	2 cut(s)	748, 918
ErhI	CCWWGG	2 cut(s)	748, 918
Esp3I	CGTCTC	2 cut(s)	129, 810
FaeI	CATG	6 cut(s)	124, 359, 389, 455, 469, 707
FaiI	YATR	8 cut(s)	122, 357, 371, 387, 453, 467, 608, 705
FalI	AAGNNNNNCTT	2 cut(s)	732, 764
FatI	CATG	6 cut(s)	120, 355, 385, 451, 465, 703
FauI	CCCGC	1 cut(s)	326
FbaI	TGATCA	2 cut(s)	448, 562
Fnu4HI	GCNGC	2 cut(s)	27, 701
FokI	GGATG	2 cut(s)	161, 866
Fsp4HI	GCNGC	2 cut(s)	27, 701
FspBI	CTAG	2 cut(s)	443, 791
GluI	GCNGC	2 cut(s)	27, 701
HaeIII	GGCC	3 cut(s)	5, 585, 917
HapII	CCGG	3 cut(s)	340, 586, 888
HgaI	GACGC	1 cut(s)	827
Hin1II	CATG	6 cut(s)	124, 359, 389, 455, 469, 707
HindIII	AAGCTT	1 cut(s)	255
HinfI	GANTC	1 cut(s)	669
HpaII	CCGG	3 cut(s)	340, 586, 888
HphI	GGTGA	3 cut(s)	425, 458, 952
Hpy166II	GTNNAC	4 cut(s)	126, 655, 715, 767
Hpy188I	TCNGA	5 cut(s)	64, 134, 234, 499, 666
Hpy188III	TCNNGA	2 cut(s)	356, 791
Hpy8I	GTNNAC	4 cut(s)	126, 655, 715, 767
HpyAV	CCTTC	1 cut(s)	258
HpyCH4III	ACNGT	2 cut(s)	176, 424
HpyCH4IV	ACGT	2 cut(s)	138, 169
HpyCH4V	TGCA	4 cut(s)	14, 335, 758, 802
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	4 cut(s)	47, 63, 665, 930
HpySE526I	ACGT	2 cut(s)	138, 169
Hsp92II	CATG	6 cut(s)	124, 359, 389, 455, 469, 707
Ksp22I	TGATCA	2 cut(s)	448, 562
LmnI	GCTCC	1 cut(s)	56
LpnPI	CCDG	7 cut(s)	307, 342, 353, 396, 599, 659, 901
Lsp1109I	GCAGC	2 cut(s)	38, 712
LweI	GCATC	2 cut(s)	139, 211
MaeI	CTAG	2 cut(s)	443, 791
MaeII	ACGT	2 cut(s)	138, 169
MaeIII	GTNAC	4 cut(s)	170, 176, 381, 940
MbiI	CCGCTC	1 cut(s)	321
MboII	GAAGA	5 cut(s)	167, 407, 533, 643, 881
MflI	RGATCY	3 cut(s)	97, 229, 744
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	5 cut(s)	360, 403, 531, 836, 898
MlyI	GAGTC	1 cut(s)	678
MnlI	CCTC	8 cut(s)	58, 220, 372, 447, 450, 493, 614, 904
MseI	TTAA	6 cut(s)	204, 363, 393, 689, 726, 824
MslI	CAYNNNNRTG	2 cut(s)	444, 570
MspCI	CTTAAG	1 cut(s)	688
MspI	CCGG	3 cut(s)	340, 586, 888
MspR9I	CCNGG	1 cut(s)	889
Mva1269I	GAATGC	1 cut(s)	335
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	889
NlaIII	CATG	6 cut(s)	124, 359, 389, 455, 469, 707
NlaIV	GGNNCC	1 cut(s)	916
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	2 cut(s)	176, 940
NspI	RCATGY	1 cut(s)	707
PagI	TCATGA	1 cut(s)	355
PctI	GAATGC	1 cut(s)	335
PkrI	GCNGC	2 cut(s)	28, 702
PleI	GAGTC	1 cut(s)	677
PpsI	GAGTC	1 cut(s)	677
Ppu21I	YACGTR	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	916
PspPI	GGNCC	2 cut(s)	885, 915
PsuI	RGATCY	3 cut(s)	97, 229, 744
RsaI	GTAC	4 cut(s)	303, 656, 766, 877
RsaNI	GTAC	4 cut(s)	302, 655, 765, 876
RseI	CAYNNNNRTG	2 cut(s)	444, 570
SaqAI	TTAA	6 cut(s)	204, 363, 393, 689, 726, 824
SatI	GCNGC	2 cut(s)	27, 701
Sau96I	GGNCC	2 cut(s)	885, 915
SchI	GAGTC	1 cut(s)	678
ScrFI	CCNGG	1 cut(s)	889
SduI	GDGCHC	1 cut(s)	144
SfaNI	GCATC	2 cut(s)	139, 211
SfcI	CTRYAG	1 cut(s)	606
SinI	GGWCC	1 cut(s)	885
SmiMI	CAYNNNNRTG	2 cut(s)	444, 570
SmlI	CTYRAG	1 cut(s)	688
SmoI	CTYRAG	1 cut(s)	688
Sse9I	AATT	5 cut(s)	360, 403, 531, 836, 898
SsiI	CCGC	4 cut(s)	95, 103, 224, 319
SspMI	CTAG	2 cut(s)	443, 791
StyD4I	CCNGG	1 cut(s)	887
StyI	CCWWGG	2 cut(s)	748, 918
TaaI	ACNGT	2 cut(s)	176, 424
TaiI	ACGT	2 cut(s)	141, 172
TaqI	TCGA	1 cut(s)	672
TasI	AATT	5 cut(s)	360, 403, 531, 836, 898
TatI	WGTACW	1 cut(s)	654
Tru1I	TTAA	6 cut(s)	204, 363, 393, 689, 726, 824
Tru9I	TTAA	6 cut(s)	204, 363, 393, 689, 726, 824
TscAI	CASTG	4 cut(s)	289, 427, 717, 781
TseFI	GTSAC	2 cut(s)	176, 940
TseI	GCWGC	2 cut(s)	26, 700
Tsp45I	GTSAC	2 cut(s)	176, 940
TspDTI	ATGAA	3 cut(s)	372, 416, 482
TspGWI	ACGGA	2 cut(s)	9, 479
TspRI	CASTG	4 cut(s)	289, 427, 717, 781
Vha464I	CTTAAG	1 cut(s)	688
VpaK11BI	GGWCC	1 cut(s)	885
XagI	CCTNNNNNAGG	1 cut(s)	441
XapI	RAATTY	2 cut(s)	836, 898
XbaI	TCTAGA	1 cut(s)	790
XceI	RCATGY	1 cut(s)	707
XspI	CTAG	2 cut(s)	443, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.