RchiOBHm_Chr3g0482451

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
28547531 .. 28549764
2234 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44731

Sequence Viewer

Length: 2079 bp
ATGACCCACTCCTTCATTTCTGCTTCGGAGGTTGTTGGTAGAGACTCTGACAAAGAAGTGATTGTAGATCTTCTAATGCCAAAAACTGTTGATCTACAAAATGGGAATTCCCAGAGTGTTGTCTCTGTTATTCCCATAGTTGGTATAGGAGGGTTGGGTAAGACCACACTTGCCAAGTTGGTCTACAATGATGAAATGGTCGTTGGGCATTTCGATTTGCGGATGTGGGTGTATGTGTCAGTGGACTTTGATATTCATAGGCTGATGGAAAAGATCCTTAGTTCTGCACTAGGTAAAGAAATCAGTGAGAAAATGTCTGTGGATCAATTACAAGCAAAGTTACGTGAGTCATTGAAGGATAAGAAATATTTGCTTGTCTTGGATGATGTATGGAATGAGGATCGTAGTCAATGGAGTGACTTGAGAAATTTGTTGATAGACGGGATCAAATTAGGAAGTAAAATCTTAGTGACAACCCGTAATCTCTCAGTTGCTTCAATCATGGGCACTGAACAACCATACAATTTAGCTGGCCTTTCTTATGAGTATTGTTTGTCATTGTTTACAAAATGTGCATTCAAGGAAGGTGATGAGAAACAGCATCCACACCTCTTTGAAATTGGAAAAGAGATTGTGAAGAAGTGCGGAGGGGCTCCGTTGGCGGTGAGAACTTTAGGGAGTCAACTGTACTCAGAGACTGATGAGCGTCGATGGAAATTAGTAAGAGATTCTAAGATATGGGAATTGGAGAGAGGGAGTGGTCATATCTTGCCTGCTTTGAGATTGAGTTATATTCAATTGCCTTCATACCTGAAACCATGCCTTGGTTATTGTGCATATCTTTCAAAGAATAGATGTGATTCTGTGGATTTGATCCATTCTTGGATGGCTCATGGAATCCTTCAATCTCGTGATAATGAGAATTTGGAGATGGAAGATGTTGGGGAGCAATATTTTAAAGAATTATGGGCGAGATCGTTCTTTGAAAATGTGGAAATTGACGAGGATTTGTATGATGTCGTCTATACATTTTCTATGCATGATCTTATCTATGACCTTGTACAGTCAATTGGGCAAGATGAGTGGTCTGTTGTGGATTCTAGCACTAAAGACATCGATGAAAATGTTAGACACTTGTCATTTTTGAAATCTGACAACAAACTAATAGTTTCAACGGTGTTGCAAAAGTTGAAAAAAGTGCAGGGTATAACTCTAATGGAAGATGTGCAAAAGTTAAAAAAAGTGCAGAGTATAACTCTAATGGAAGATGTGCCTATCGACGAATCCTTCCTTGATACTTGCTTTTCAAAATTTAAATATTTGAGGGTGCTTCGCTTCGTTGAATTATCAGTGGAGTTGCCAAGTTCCATTGGTACATTAAAGCATTTAAGATATCTGGTTTTACAAGGAGGTAAGATGACAAAACTGCCCACTGCCATTTGCAAGTTGCAGAGCTTGCAAACCCTATTTCTTGGTGGTTGTGGAAATATTCACGAGTTGCCAAGAGATATGAGCAAGTTGATCAGCCTCAGATCGCTTATAATGACGACGAAAGAAGCATGTTTTCAAGACAATGGAGTGGGATGTTTGAAATCTCTTCGGTTTCTCGCGATTGTAAATTGTGGTAATTTAACCTCTTTGCCCCGCGAGATGAGTTACCTTGCTGCATTGCGGACTTTGATATTAGCTGATTGTGAGCAACTCGATCCGGTGAACCAACATTATCAAGCAATTCCATTGAGGCTTGAAAAGTTGGCTATTAAGGGACTACCACGGATGACGGAGTTGCCTGAATGGTTTCGAGGAGCTCCCAACACCCTACAGCACCTGTACATTAAAGATTGTTCCAATTTGGGTTCATTACCAGGGTGGCTCACAAATCTAACATCACTTAAAAAGCTTTTCCTCAAGAAATGCCCCAAATTGTTGTCACTTCCAGAAGGGATGGATCGTCTCACTGCCTTGAGAGACTTGAAGATACAACGGTGTCCTGAGTTGCAGAGAAGATGCGAGCGTGACACTGGTGAAGAATGGCCAAAGATTGCTCGGATTCCAAACATTTATATTTCAAACTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

692

Amino Acids

78.87

Weight (kDa)

6.72

Isoelectric Point (pI)

40.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 38 - 195 1.8e-34 NB-ARC domain
WHD_DRP PF23559 287 - 354 5.3e-17 Disease resistance protein Winged helix domain
LRR_14 PF23598 433 - 624 2.9e-22 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1541
AccB7I CCANNNNNTGG 1 cut(s) 824
AccI GTMKAC 1 cut(s) 183
AccII CGCG 2 cut(s) 1610, 1647
AciI CCGC 5 cut(s) 220, 645, 662, 1645, 1672
AclWI GGATC 7 cut(s) 268, 330, 408, 452, 868, 1700, 1956
AcoI YGGCCR 1 cut(s) 2033
AcsI RAATTY 4 cut(s) 106, 427, 922, 1310
AfaI GTAC 4 cut(s) 689, 1062, 1375, 1832
AfiI CCNNNNNNNGG 2 cut(s) 140, 824
AjnI CCWGG 1 cut(s) 1864
AjuI GAANNNNNNNTTGG 2 cut(s) 186, 218
AluBI AGCT 5 cut(s) 530, 1455, 1688, 1808, 1900
AluI AGCT 5 cut(s) 530, 1455, 1688, 1808, 1900
Alw21I GWGCWC 1 cut(s) 1810
Alw26I GTCTC 5 cut(s) 36, 127, 689, 1958, 1962
AlwI GGATC 7 cut(s) 268, 330, 408, 452, 868, 1700, 1956
AlwNI CAGNNNCTG 2 cut(s) 698, 1828
AoxI GGCC 2 cut(s) 532, 2033
ApeKI GCWGC 1 cut(s) 1664
ApoI RAATTY 4 cut(s) 106, 427, 922, 1310
Asp700I GAANNNNTTC 1 cut(s) 1797
AsuHPI GGTGA 4 cut(s) 599, 676, 1723, 2036
BaeGI GKGCMC 1 cut(s) 509
BaeI ACNNNNGTAYC 2 cut(s) 1970, 2003
BalI TGGCCA 1 cut(s) 2035
BanII GRGCYC 2 cut(s) 655, 1810
BauI CACGAG 2 cut(s) 909, 1493
Bbv12I GWGCWC 1 cut(s) 1810
BbvI GCAGC 1 cut(s) 1651
BccI CCATC 5 cut(s) 259, 705, 880, 925, 1939
BciT130I CCWGG 1 cut(s) 1866
BclI TGATCA 1 cut(s) 1521
BcoDI GTCTC 5 cut(s) 36, 127, 689, 1958, 1962
BfaI CTAG 2 cut(s) 290, 1101
BfmI CTRYAG 1 cut(s) 1820
BglII AGATCT 1 cut(s) 67
BisI GCNGC 1 cut(s) 1665
BlsI GCNGC 1 cut(s) 1666
Bme1390I CCNGG 1 cut(s) 1866
BmiI GGNNCC 1 cut(s) 654
BmrFI CCNGG 1 cut(s) 1866
BmsI GCATC 2 cut(s) 610, 1997
BoxI GACNNNNGTC 1 cut(s) 1135
BplI GAGNNNNNCTC 2 cut(s) 1240, 1272
BpuEI CTTGAG 3 cut(s) 442, 1892, 1984
Bsa29I ATCGAT 1 cut(s) 1116
BsaAI YACGTR 1 cut(s) 344
BsaJI CCNNGG 3 cut(s) 823, 1772, 1865
BsaWI WCCGGW 1 cut(s) 1708
Bsc4I CCNNNNNNNGG 2 cut(s) 140, 824
Bse1I ACTGG 2 cut(s) 2026, 2078
Bse3DI GCAATG 1 cut(s) 1667
BseBI CCWGG 1 cut(s) 1866
BseCI ATCGAT 1 cut(s) 1116
BseDI CCNNGG 3 cut(s) 823, 1772, 1865
BseGI GGATG 7 cut(s) 228, 388, 601, 891, 1589, 1782, 1950
BseLI CCNNNNNNNGG 2 cut(s) 140, 824
BseMI GCAATG 1 cut(s) 1667
BseMII CTCAG 4 cut(s) 501, 705, 1543, 1983
BseNI ACTGG 2 cut(s) 2026, 2078
BseRI GAGGAG 1 cut(s) 1818
BseSI GKGCMC 1 cut(s) 509
BseXI GCAGC 1 cut(s) 1651
BsgI GTGCAG 3 cut(s) 270, 1220, 1265
Bsh1236I CGCG 2 cut(s) 1610, 1647
BshFI GGCC 2 cut(s) 534, 2035
BshVI ATCGAT 1 cut(s) 1116
BsiHKAI GWGCWC 1 cut(s) 1810
BsiSI CCGG 1 cut(s) 1709
BslFI GGGAC 1 cut(s) 1779
BslI CCNNNNNNNGG 2 cut(s) 140, 824
BsmAI GTCTC 5 cut(s) 36, 127, 689, 1958, 1962
BsmBI CGTCTC 1 cut(s) 1958
BsmFI GGGAC 1 cut(s) 1779
BsmI GAATGC 1 cut(s) 575
BsnI GGCC 2 cut(s) 534, 2035
Bsp1286I GDGCHC 3 cut(s) 509, 655, 1810
Bsp1407I TGTACA 2 cut(s) 1060, 1830
Bsp68I TCGCGA 1 cut(s) 1610
BspACI CCGC 5 cut(s) 220, 645, 662, 1645, 1672
BspANI GGCC 2 cut(s) 534, 2035
BspCNI CTCAG 4 cut(s) 500, 704, 1542, 1984
BspDI ATCGAT 1 cut(s) 1116
BspFNI CGCG 2 cut(s) 1610, 1647
BspLI GGNNCC 1 cut(s) 654
BspPI GGATC 7 cut(s) 268, 330, 408, 452, 868, 1700, 1956
BsrDI GCAATG 1 cut(s) 1667
BsrGI TGTACA 2 cut(s) 1060, 1830
BsrI ACTGG 2 cut(s) 2026, 2078
BssECI CCNNGG 3 cut(s) 823, 1772, 1865
BssSI CACGAG 2 cut(s) 909, 1493
BssT1I CCWWGG 1 cut(s) 823
Bst2BI CACGAG 2 cut(s) 909, 1493
Bst2UI CCWGG 1 cut(s) 1866
Bst4CI ACNGT 5 cut(s) 88, 687, 1065, 1177, 1986
Bst6I CTCTTC 1 cut(s) 1602
BstAPI GCANNNNNTGC 1 cut(s) 1456
BstAUI TGTACA 2 cut(s) 1060, 1830
BstBAI YACGTR 1 cut(s) 344
BstC8I GCNNGC 4 cut(s) 532, 774, 1457, 2012
BstDEI CTNAG 7 cut(s) 278, 466, 487, 691, 732, 1529, 1992
BstDSI CCRYGG 1 cut(s) 1772
BstF5I GGATG 7 cut(s) 228, 388, 601, 891, 1589, 1782, 1950
BstFNI CGCG 2 cut(s) 1610, 1647
BstMAI GTCTC 5 cut(s) 36, 127, 689, 1958, 1962
BstMWI GCNNNNNNNGC 2 cut(s) 659, 1456
BstNI CCWGG 1 cut(s) 1866
BstNSI RCATGY 1 cut(s) 1563
BstPAI GACNNNNGTC 1 cut(s) 1135
BstSCI CCNGG 1 cut(s) 1864
BstSFI CTRYAG 1 cut(s) 1820
BstSLI GKGCMC 1 cut(s) 509
BstUI CGCG 2 cut(s) 1610, 1647
BstV1I GCAGC 1 cut(s) 1651
BstX2I RGATCY 2 cut(s) 67, 273
BstYI RGATCY 2 cut(s) 67, 273
Bsu15I ATCGAT 1 cut(s) 1116
BsuRI GGCC 2 cut(s) 534, 2035
BsuTUI ATCGAT 1 cut(s) 1116
BtgI CCRYGG 1 cut(s) 1772
BtsCI GGATG 7 cut(s) 228, 388, 601, 891, 1589, 1782, 1950
BtsI GCAGTG 2 cut(s) 1431, 1956
BtsIMutI CAGTG 7 cut(s) 246, 310, 507, 1356, 1431, 1956, 2019
BtuMI TCGCGA 1 cut(s) 1610
Cac8I GCNNGC 4 cut(s) 532, 774, 1457, 2012
CaiI CAGNNNCTG 2 cut(s) 698, 1828
ClaI ATCGAT 1 cut(s) 1116
CseI GACGC 1 cut(s) 695
Csp6I GTAC 4 cut(s) 688, 1061, 1374, 1831
CspCI CAANNNNNGTGG 2 cut(s) 1064, 1099
CviAII CATG 5 cut(s) 502, 819, 893, 1040, 1560
CviQI GTAC 4 cut(s) 688, 1061, 1374, 1831
DdeI CTNAG 7 cut(s) 278, 466, 487, 691, 732, 1529, 1992
DraI TTTAAA 2 cut(s) 958, 1315
EaeI YGGCCR 1 cut(s) 2033
Eam1104I CTCTTC 1 cut(s) 1602
EarI CTCTTC 1 cut(s) 1602
Ecl136II GAGCTC 1 cut(s) 1808
Eco130I CCWWGG 1 cut(s) 823
Eco24I GRGCYC 2 cut(s) 655, 1810
Eco32I GATATC 1 cut(s) 1394
Eco53kI GAGCTC 1 cut(s) 1808
EcoICRI GAGCTC 1 cut(s) 1808
EcoRI GAATTC 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 1864
EcoRV GATATC 1 cut(s) 1394
EcoT14I CCWWGG 1 cut(s) 823
EcoT22I ATGCAT 1 cut(s) 1041
EcoT38I GRGCYC 2 cut(s) 655, 1810
ErhI CCWWGG 1 cut(s) 823
Esp3I CGTCTC 1 cut(s) 1958
FaeI CATG 5 cut(s) 505, 822, 896, 1043, 1563
FaqI GGGAC 1 cut(s) 1779
FatI CATG 5 cut(s) 501, 818, 892, 1039, 1559
FauI CCCGC 1 cut(s) 1652
FbaI TGATCA 1 cut(s) 1521
FblI GTMKAC 1 cut(s) 183
Fnu4HI GCNGC 1 cut(s) 1665
FokI GGATG 7 cut(s) 235, 395, 588, 898, 1596, 1789, 1957
FriOI GRGCYC 2 cut(s) 655, 1810
Fsp4HI GCNGC 1 cut(s) 1665
FspBI CTAG 2 cut(s) 290, 1101
GluI GCNGC 1 cut(s) 1665
HaeIII GGCC 2 cut(s) 534, 2035
HapII CCGG 1 cut(s) 1709
HgaI GACGC 1 cut(s) 695
Hin1II CATG 5 cut(s) 505, 822, 896, 1043, 1563
HincII GTYRAC 1 cut(s) 683
HindII GTYRAC 1 cut(s) 683
HindIII AAGCTT 1 cut(s) 1898
HinfI GANTC 9 cut(s) 44, 347, 679, 728, 860, 897, 1097, 1283, 2050
HpaII CCGG 1 cut(s) 1709
HphI GGTGA 4 cut(s) 599, 676, 1723, 2036
Hpy166II GTNNAC 5 cut(s) 184, 244, 564, 683, 1714
Hpy188I TCNGA 6 cut(s) 28, 49, 694, 1153, 1532, 2049
Hpy188III TCNNGA 7 cut(s) 911, 1493, 1568, 1609, 1909, 1937, 1991
Hpy8I GTNNAC 5 cut(s) 184, 244, 564, 683, 1714
Hpy99I CGWCG 3 cut(s) 711, 1283, 1552
HpyAV CCTTC 7 cut(s) 22, 349, 578, 813, 911, 1297, 1934
HpyCH4III ACNGT 5 cut(s) 88, 687, 1065, 1177, 1986
HpyCH4IV ACGT 1 cut(s) 343
HpyF10VI GCNNNNNNNGC 2 cut(s) 659, 1456
HpyF3I CTNAG 7 cut(s) 278, 466, 487, 691, 732, 1529, 1992
HpySE526I ACGT 1 cut(s) 343
Hsp92II CATG 5 cut(s) 505, 822, 896, 1043, 1563
Ksp22I TGATCA 1 cut(s) 1521
LmnI GCTCC 4 cut(s) 658, 946, 1805, 1813
Lsp1109I GCAGC 1 cut(s) 1651
LweI GCATC 2 cut(s) 610, 1997
MaeI CTAG 2 cut(s) 290, 1101
MaeII ACGT 1 cut(s) 343
MaeIII GTNAC 6 cut(s) 339, 416, 469, 1655, 1929, 2015
MboII GAAGA 9 cut(s) 62, 649, 947, 1232, 1277, 1589, 1987, 2016, 2039
MfeI CAATTG 2 cut(s) 797, 1068
MflI RGATCY 2 cut(s) 67, 273
MhlI GDGCHC 3 cut(s) 509, 655, 1810
MlsI TGGCCA 1 cut(s) 2035
MluNI TGGCCA 1 cut(s) 2035
MlyI GAGTC 3 cut(s) 38, 356, 688
Mox20I TGGCCA 1 cut(s) 2035
Mph1103I ATGCAT 1 cut(s) 1041
MroXI GAANNNNTTC 1 cut(s) 1797
MscI TGGCCA 1 cut(s) 2035
MseI TTAA 9 cut(s) 957, 1235, 1314, 1379, 1388, 1631, 1761, 1836, 1893
Msp20I TGGCCA 1 cut(s) 2035
MspI CCGG 1 cut(s) 1709
MspR9I CCNGG 1 cut(s) 1866
MunI CAATTG 2 cut(s) 797, 1068
Mva1269I GAATGC 1 cut(s) 575
MvaI CCWGG 1 cut(s) 1866
MvnI CGCG 2 cut(s) 1610, 1647
MwoI GCNNNNNNNGC 2 cut(s) 659, 1456
NlaIII CATG 5 cut(s) 505, 822, 896, 1043, 1563
NlaIV GGNNCC 1 cut(s) 654
NmuCI GTSAC 4 cut(s) 416, 469, 1929, 2015
NruI TCGCGA 1 cut(s) 1610
NsiI ATGCAT 1 cut(s) 1041
NspI RCATGY 1 cut(s) 1563
PctI GAATGC 1 cut(s) 575
PdmI GAANNNNTTC 1 cut(s) 1797
PfeI GAWTC 6 cut(s) 728, 860, 897, 1097, 1283, 2050
PflMI CCANNNNNTGG 1 cut(s) 824
PkrI GCNGC 1 cut(s) 1666
PleI GAGTC 3 cut(s) 38, 355, 687
PpsI GAGTC 3 cut(s) 38, 355, 687
Ppu21I YACGTR 1 cut(s) 344
PshAI GACNNNNGTC 1 cut(s) 1135
PsiI TTATAA 1 cut(s) 1541
Psp124BI GAGCTC 1 cut(s) 1810
Psp6I CCWGG 1 cut(s) 1864
PspGI CCWGG 1 cut(s) 1864
PspN4I GGNNCC 1 cut(s) 654
PstNI CAGNNNCTG 2 cut(s) 698, 1828
PsuI RGATCY 2 cut(s) 67, 273
RruI TCGCGA 1 cut(s) 1610
RsaI GTAC 4 cut(s) 689, 1062, 1375, 1832
RsaNI GTAC 4 cut(s) 688, 1061, 1374, 1831
SacI GAGCTC 1 cut(s) 1810
SaqAI TTAA 9 cut(s) 957, 1235, 1314, 1379, 1388, 1631, 1761, 1836, 1893
SatI GCNGC 1 cut(s) 1665
SchI GAGTC 3 cut(s) 38, 356, 688
ScrFI CCNGG 1 cut(s) 1866
SduI GDGCHC 3 cut(s) 509, 655, 1810
SfaNI GCATC 2 cut(s) 610, 1997
SfcI CTRYAG 1 cut(s) 1820
SmiI ATTTAAAT 1 cut(s) 1315
SmlI CTYRAG 3 cut(s) 421, 1907, 1963
SmoI CTYRAG 3 cut(s) 421, 1907, 1963
SsiI CCGC 5 cut(s) 220, 645, 662, 1645, 1672
SspI AATATT 4 cut(s) 368, 953, 1319, 1489
SspMI CTAG 2 cut(s) 290, 1101
SstI GAGCTC 1 cut(s) 1810
StyD4I CCNGG 1 cut(s) 1864
StyI CCWWGG 1 cut(s) 823
SwaI ATTTAAAT 1 cut(s) 1315
TaaI ACNGT 5 cut(s) 88, 687, 1065, 1177, 1986
TaiI ACGT 1 cut(s) 346
TaqI TCGA 6 cut(s) 213, 709, 1116, 1278, 1704, 1801
TatI WGTACW 3 cut(s) 687, 1060, 1830
TfiI GAWTC 6 cut(s) 728, 860, 897, 1097, 1283, 2050
Tru1I TTAA 9 cut(s) 957, 1235, 1314, 1379, 1388, 1631, 1761, 1836, 1893
Tru9I TTAA 9 cut(s) 957, 1235, 1314, 1379, 1388, 1631, 1761, 1836, 1893
TscAI CASTG 7 cut(s) 246, 310, 514, 1356, 1438, 1963, 2026
TseFI GTSAC 4 cut(s) 416, 469, 1929, 2015
TseI GCWGC 1 cut(s) 1664
Tsp45I GTSAC 4 cut(s) 416, 469, 1929, 2015
TspDTI ATGAA 6 cut(s) 4, 207, 245, 795, 1134, 1848
TspGWI ACGGA 3 cut(s) 645, 1789, 1796
TspRI CASTG 7 cut(s) 246, 310, 514, 1356, 1438, 1963, 2026
Van91I CCANNNNNTGG 1 cut(s) 824
XapI RAATTY 4 cut(s) 106, 427, 922, 1310
XceI RCATGY 1 cut(s) 1563
XmiI GTMKAC 1 cut(s) 183
XmnI GAANNNNTTC 1 cut(s) 1797
XspI CTAG 2 cut(s) 290, 1101
Zsp2I ATGCAT 1 cut(s) 1041
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.