Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001156

Physical Location & Seq

Genomic Coordinates Forward (+)

6293375 .. 6294697

Gene Structure 1323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G033700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGACTGATCTTGCCTTTCCTTTGGCAACCAAACTCACTGAAAAGCTCGGGTCCTTTGCTTCTGAGCAGATCTGCTTGGCATGGGGCGTTAAAGCTGATCTGAAAAAGCTTCAGAGCACAATGTCCACCATCAAAGATGTCCTCTTGGATGCCGAACAGAAGCAAGCTCATAACCAGCAGATACGCAGTTGGCTAAGACAGCTTAAAGATGTATTTCTTGATGCCGAGGATTTGTTGGATGAGTTTGAGTGCGAAGCTTTGCGGAGGGAAGTGGTACGCCGTTTCTTCTCTCGTTCTAATCCAATTGCATTCCGTTTGAGAGTAGGTCATGAAATCAAGGAGATTAGAGGGAGGTTAGATGAACTCAAGTCCAATAAGGCTATATTTGATTCTCTCACTAGTATTGATCATCATGGAGGTGGTGGTGATCATCATGAAAGAGTGAATGTGACCCACTCCTTCCTTCGTGCTTCAAAGGTTATTGGTAGAGAGTCTCGTGTTCATGGGAATATGGAGTTGGAAGACTTCGGAGAGCTATATTTTAAAGATTTATGGGCGAGATACTTTTTTCAAAACGTTATTGATTTCCATGTGTTCTACATATTTGATATGCATCATCTTATCCATGATCTTGTACAATCAGTTGCACAAGATGAGTGTTTTATAGTGAAGAATGCAAACACCATAGACATATCTGAAAATGTTAGACATTTGACAGTTTTGGAAGCTGGCCAAAATGTTTCAACAACCTTGCAAAAGTTGAACCAAGTGCGGACTATAGAAACATGCGAAATAGATATGGATGAATCCTTCATGTGCACTTGCTTCTCAAGATTCAAGTATTTGCGAGTGGGTGTGTTACCTAAATGTTCATTACAAGTGTTGCCAAGTTCCATTGGTTCCCTGAAACATTTGAGATATCTGGCCTTTAATTTGAATGAGGCAATAACGAAACTCCCCAATGCAATTTGCAGACTGCAGAGCTTGCAAACTCTAAATTTTGTTTATTGTGAGAATCTCCAAGAGTTACCGAGAGATATAAGCAAATTGATCAGCCTCACATCACTTTTCTTAACCACAAAACAAACAAGTTTTACAGAGAATGGGGTGGGATGCTTGAAATCACTTCGATTTCTTAATATTTCCAGGTGTAGTAATTTAACCTCTTTGCCGCGTGAAACGAGCTATCTTGCTGCATTACGAACTCTGTGGATAGCAGATTGCAAACAACTGGATTTGGGGAACGTAAACTATCAAGGAACTCCACTGAGGCTCATATTAAGGAATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

431

Amino Acids

49.36

Weight (kDa)

7.59

Isoelectric Point (pI)

45.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001156)

Species	Orthologous Gene IDs
malus_domestica	MD09G1161800.v1.1 MD09G1161900.v1.1 MD12G1180400.v1.1 MD14G1068500.v1.1 MD14G1068900.v1.1 MD14G1069100.v1.1 MD14G1070400.v1.1 MD14G1072100.v1.1 MD14G1072300.v1.1 MD14G1072500.v1.1
prunus_persica	Prupe.7G033700_v2.0.a1 Prupe.7G060200_v2.0.a1 Prupe.7G060300_v2.0.a1 Prupe.7G062200_v2.0.a1 Prupe.7G062300_v2.0.a1 Prupe.7G062500_v2.0.a1 Prupe.7G062600_v2.0.a1 Prupe.7G062700_v2.0.a1 Prupe.7G062800_v2.0.a1 Prupe.7G062900_v2.0.a1 Prupe.7G063000_v2.0.a1 Prupe.7G063800_v2.0.a1
pyrus_communis	pycom12g17000 pycom12g17010 pycom14g05670 pycom14g05690 pycom14g05730 pycom14g05810 pycom14g05820 pycom14g05860 pycom14g05900 pycom14g05920 pycom14g05950 pycom14g05960 pycom14g06200
rosa_chinensis	RchiOBHm_Chr3g0482391 RchiOBHm_Chr3g0482451 RchiOBHm_Chr5g0007861
rosa_multiflora	Rmu_sc0002969.1_g000005 Rmu_sc0013521.1_g000002 Rmu_sc0013521.1_g000003 Rmu_sc0021597.1_g000001
rosa_roxburghii	Rroxscaffold_6G00399360
rosa_rugosa	Rorug03G0193500 Rorug03G0195900 Rorug03G0196100
rosa_samantha	Rh1BG172200 Rh2CG271300 Rh3BG282500 Rh3BG282900 Rh3BG283100 Rh3CG279500 Rh3DG275300 Rh3DG275700
rosa_wichuraiana	Rw3G022230 Rw3G022260 Rw3G022280 Rw3G022310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1174
AciI	CCGC	3 cut(s)	262, 772, 1172
AclI	AACGTT	1 cut(s)	576
AcoI	YGGCCR	1 cut(s)	730
AcsI	RAATTY	2 cut(s)	997, 1285
AcuI	CTGAAG	1 cut(s)	95
AfaI	GTAC	2 cut(s)	276, 636
AgsI	TTSAA	7 cut(s)	474, 572, 744, 763, 838, 937, 1120
AhlI	ACTAGT	1 cut(s)	398
AjnI	CCWGG	1 cut(s)	1145
AjuI	GAANNNNNNNTTGG	2 cut(s)	500, 532
Alw21I	GWGCWC	2 cut(s)	119, 821
Alw26I	GTCTC	1 cut(s)	498
Alw44I	GTGCAC	1 cut(s)	817
Ama87I	CYCGRG	1 cut(s)	47
AoxI	GGCC	2 cut(s)	730, 924
ApaLI	GTGCAC	1 cut(s)	817
ApeKI	GCWGC	1 cut(s)	1193
ApoI	RAATTY	2 cut(s)	997, 1285
AspS9I	GGNCC	1 cut(s)	51
AsuHPI	GGTGA	1 cut(s)	437
AvaI	CYCGRG	1 cut(s)	47
AvaII	GGWCC	1 cut(s)	51
BaeGI	GKGCMC	1 cut(s)	821
BalI	TGGCCA	1 cut(s)	732
BauI	CACGAG	1 cut(s)	495
BbsI	GAAGAC	1 cut(s)	528
Bbv12I	GWGCWC	2 cut(s)	119, 821
BbvI	GCAGC	1 cut(s)	1180
BccI	CCATC	1 cut(s)	137
BceAI	ACGGC	1 cut(s)	264
BciT130I	CCWGG	1 cut(s)	1147
BclI	TGATCA	3 cut(s)	406, 427, 1050
BcoDI	GTCTC	1 cut(s)	498
BcuI	ACTAGT	1 cut(s)	398
BfaI	CTAG	1 cut(s)	399
BfmI	CTRYAG	2 cut(s)	777, 977
BglII	AGATCT	1 cut(s)	69
BisI	GCNGC	2 cut(s)	1172, 1194
BlsI	GCNGC	2 cut(s)	1173, 1195
Bme1390I	CCNGG	1 cut(s)	1147
Bme18I	GGWCC	1 cut(s)	51
BmeT110I	CYCGRG	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	51
BmiI	GGNNCC	2 cut(s)	52, 901
BmrFI	CCNGG	1 cut(s)	1147
BmsI	GCATC	4 cut(s)	139, 211, 622, 1103
BpiI	GAAGAC	1 cut(s)	528
BpuEI	CTTGAG	2 cut(s)	350, 814
BsaBI	GATNNNNATC	1 cut(s)	612
BsaJI	CCNNGG	1 cut(s)	225
Bse1I	ACTGG	1 cut(s)	1236
Bse8I	GATNNNNATC	1 cut(s)	612
BseBI	CCWGG	1 cut(s)	1147
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	4 cut(s)	154, 244, 808, 1118
BseJI	GATNNNNATC	1 cut(s)	612
BseMII	CTCAG	2 cut(s)	54, 1259
BseNI	ACTGG	1 cut(s)	1236
BseSI	GKGCMC	1 cut(s)	821
BseXI	GCAGC	1 cut(s)	1180
Bsh1236I	CGCG	1 cut(s)	1174
BshFI	GGCC	2 cut(s)	732, 926
BsiHKAI	GWGCWC	2 cut(s)	119, 821
BsiHKCI	CYCGRG	1 cut(s)	47
BsmAI	GTCTC	1 cut(s)	498
BsmI	GAATGC	2 cut(s)	308, 679
BsnI	GGCC	2 cut(s)	732, 926
BsoBI	CYCGRG	1 cut(s)	47
Bsp1286I	GDGCHC	2 cut(s)	119, 821
Bsp1407I	TGTACA	1 cut(s)	634
Bsp143I	GATC	7 cut(s)	7, 69, 97, 406, 427, 628, 1050
BspACI	CCGC	3 cut(s)	262, 772, 1172
BspANI	GGCC	2 cut(s)	732, 926
BspCNI	CTCAG	2 cut(s)	55, 1260
BspFNI	CGCG	1 cut(s)	1174
BspHI	TCATGA	2 cut(s)	328, 433
BspLI	GGNNCC	2 cut(s)	52, 901
BspMAI	CTGCAG	1 cut(s)	981
BsrGI	TGTACA	1 cut(s)	634
BsrI	ACTGG	1 cut(s)	1236
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	7 cut(s)	7, 69, 97, 406, 427, 628, 1050
BssSI	CACGAG	1 cut(s)	495
Bst2BI	CACGAG	1 cut(s)	495
Bst2UI	CCWGG	1 cut(s)	1147
Bst4CI	ACNGT	1 cut(s)	718
BstAPI	GCANNNNNTGC	1 cut(s)	985
BstAUI	TGTACA	1 cut(s)	634
BstC8I	GCNNGC	3 cut(s)	165, 730, 986
BstDEI	CTNAG	4 cut(s)	63, 194, 1268, 1290
BstF5I	GGATG	4 cut(s)	154, 244, 808, 1118
BstFNI	CGCG	1 cut(s)	1174
BstKTI	GATC	7 cut(s)	10, 72, 100, 409, 430, 631, 1053
BstMAI	GTCTC	1 cut(s)	498
BstMBI	GATC	7 cut(s)	7, 69, 97, 406, 427, 628, 1050
BstMWI	GCNNNNNNNGC	2 cut(s)	199, 985
BstNI	CCWGG	1 cut(s)	1147
BstNSI	RCATGY	1 cut(s)	789
BstSCI	CCNGG	1 cut(s)	1145
BstSFI	CTRYAG	2 cut(s)	777, 977
BstSLI	GKGCMC	1 cut(s)	821
BstUI	CGCG	1 cut(s)	1174
BstV1I	GCAGC	1 cut(s)	1180
BstV2I	GAAGAC	1 cut(s)	528
BstX2I	RGATCY	1 cut(s)	69
BstYI	RGATCY	1 cut(s)	69
BsuRI	GGCC	2 cut(s)	732, 926
BtsCI	GGATG	4 cut(s)	154, 244, 808, 1118
BtsIMutI	CAGTG	2 cut(s)	36, 1265
Cac8I	GCNNGC	3 cut(s)	165, 730, 986
CciI	TCATGA	2 cut(s)	328, 433
Cfr13I	GGNCC	1 cut(s)	51
Csp6I	GTAC	2 cut(s)	275, 635
CviAII	CATG	9 cut(s)	81, 329, 413, 434, 503, 590, 626, 786, 814
CviQI	GTAC	2 cut(s)	275, 635
DdeI	CTNAG	4 cut(s)	63, 194, 1268, 1290
DpnI	GATC	7 cut(s)	9, 71, 99, 408, 429, 630, 1052
DpnII	GATC	7 cut(s)	7, 69, 97, 406, 427, 628, 1050
DraI	TTTAAA	1 cut(s)	544
EaeI	YGGCCR	1 cut(s)	730
Eco32I	GATATC	1 cut(s)	920
Eco47I	GGWCC	1 cut(s)	51
Eco57I	CTGAAG	1 cut(s)	95
Eco88I	CYCGRG	1 cut(s)	47
EcoO109I	RGGNCCY	1 cut(s)	51
EcoRI	GAATTC	1 cut(s)	1285
EcoRII	CCWGG	1 cut(s)	1145
EcoRV	GATATC	1 cut(s)	920
EcoT22I	ATGCAT	1 cut(s)	615
FaeI	CATG	9 cut(s)	84, 332, 416, 437, 506, 593, 629, 789, 817
FalI	AAGNNNNNCTT	1 cut(s)	1273
FatI	CATG	9 cut(s)	80, 328, 412, 433, 502, 589, 625, 785, 813
FbaI	TGATCA	3 cut(s)	406, 427, 1050
Fnu4HI	GCNGC	2 cut(s)	1172, 1194
FokI	GGATG	4 cut(s)	161, 251, 815, 1125
Fsp4HI	GCNGC	2 cut(s)	1172, 1194
FspBI	CTAG	1 cut(s)	399
GluI	GCNGC	2 cut(s)	1172, 1194
HaeIII	GGCC	2 cut(s)	732, 926
Hin1II	CATG	9 cut(s)	84, 332, 416, 437, 506, 593, 629, 789, 817
HindIII	AAGCTT	2 cut(s)	107, 255
HinfI	GANTC	5 cut(s)	389, 491, 806, 834, 1015
HphI	GGTGA	1 cut(s)	437
Hpy166II	GTNNAC	3 cut(s)	126, 819, 1249
Hpy188I	TCNGA	5 cut(s)	64, 102, 114, 530, 697
Hpy188III	TCNNGA	4 cut(s)	218, 329, 434, 831
Hpy8I	GTNNAC	3 cut(s)	126, 819, 1249
HpyAV	CCTTC	3 cut(s)	469, 473, 820
HpyCH4III	ACNGT	1 cut(s)	718
HpyCH4IV	ACGT	2 cut(s)	576, 1245
HpyF10VI	GCNNNNNNNGC	2 cut(s)	199, 985
HpyF3I	CTNAG	4 cut(s)	63, 194, 1268, 1290
HpySE526I	ACGT	2 cut(s)	576, 1245
Hsp92II	CATG	9 cut(s)	84, 332, 416, 437, 506, 593, 629, 789, 817
Ksp22I	TGATCA	3 cut(s)	406, 427, 1050
Kzo9I	GATC	7 cut(s)	7, 69, 97, 406, 427, 628, 1050
LpnPI	CCDG	7 cut(s)	188, 714, 908, 917, 1132, 1159, 1217
Lsp1109I	GCAGC	1 cut(s)	1180
LweI	GCATC	4 cut(s)	139, 211, 622, 1103
MaeI	CTAG	1 cut(s)	399
MaeII	ACGT	2 cut(s)	576, 1245
MaeIII	GTNAC	3 cut(s)	448, 858, 1026
MalI	GATC	7 cut(s)	9, 71, 99, 408, 429, 630, 1052
MboI	GATC	7 cut(s)	7, 69, 97, 406, 427, 628, 1050
MboII	GAAGA	3 cut(s)	277, 533, 682
MfeI	CAATTG	1 cut(s)	303
MflI	RGATCY	1 cut(s)	69
MhlI	GDGCHC	2 cut(s)	119, 821
MlsI	TGGCCA	1 cut(s)	732
MluCI	AATT	7 cut(s)	303, 931, 966, 997, 1046, 1156, 1285
MluNI	TGGCCA	1 cut(s)	732
MlyI	GAGTC	1 cut(s)	500
MmeI	TCCRAC	2 cut(s)	216, 498
Mox20I	TGGCCA	1 cut(s)	732
Mph1103I	ATGCAT	1 cut(s)	615
MscI	TGGCCA	1 cut(s)	732
MseI	TTAA	8 cut(s)	90, 204, 543, 930, 1073, 1137, 1160, 1280
MslI	CAYNNNNRTG	1 cut(s)	417
Msp20I	TGGCCA	1 cut(s)	732
MspR9I	CCNGG	1 cut(s)	1147
MunI	CAATTG	1 cut(s)	303
Mva1269I	GAATGC	2 cut(s)	308, 679
MvaI	CCWGG	1 cut(s)	1147
MvnI	CGCG	1 cut(s)	1174
MwoI	GCNNNNNNNGC	2 cut(s)	199, 985
NdeII	GATC	7 cut(s)	7, 69, 97, 406, 427, 628, 1050
NlaIII	CATG	9 cut(s)	84, 332, 416, 437, 506, 593, 629, 789, 817
NlaIV	GGNNCC	2 cut(s)	52, 901
NmeAIII	GCCGAG	1 cut(s)	250
NmuCI	GTSAC	1 cut(s)	448
NsiI	ATGCAT	1 cut(s)	615
NspI	RCATGY	1 cut(s)	789
PagI	TCATGA	2 cut(s)	328, 433
PctI	GAATGC	2 cut(s)	308, 679
PfeI	GAWTC	4 cut(s)	389, 806, 834, 1015
PkrI	GCNGC	2 cut(s)	1173, 1195
PleI	GAGTC	1 cut(s)	499
PpsI	GAGTC	1 cut(s)	499
PpuMI	RGGWCCY	1 cut(s)	51
Psp1406I	AACGTT	1 cut(s)	576
Psp5II	RGGWCCY	1 cut(s)	51
Psp6I	CCWGG	1 cut(s)	1145
PspGI	CCWGG	1 cut(s)	1145
PspN4I	GGNNCC	2 cut(s)	52, 901
PspPI	GGNCC	1 cut(s)	51
PspPPI	RGGWCCY	1 cut(s)	51
PstI	CTGCAG	1 cut(s)	981
PsuI	RGATCY	1 cut(s)	69
RsaI	GTAC	2 cut(s)	276, 636
RsaNI	GTAC	2 cut(s)	275, 635
RseI	CAYNNNNRTG	1 cut(s)	417
SaqAI	TTAA	8 cut(s)	90, 204, 543, 930, 1073, 1137, 1160, 1280
SatI	GCNGC	2 cut(s)	1172, 1194
Sau3AI	GATC	7 cut(s)	7, 69, 97, 406, 427, 628, 1050
Sau96I	GGNCC	1 cut(s)	51
SchI	GAGTC	1 cut(s)	500
ScrFI	CCNGG	1 cut(s)	1147
SduI	GDGCHC	2 cut(s)	119, 821
SfaNI	GCATC	4 cut(s)	139, 211, 622, 1103
SfcI	CTRYAG	2 cut(s)	777, 977
SinI	GGWCC	1 cut(s)	51
SmiMI	CAYNNNNRTG	1 cut(s)	417
SmlI	CTYRAG	2 cut(s)	365, 829
SmoI	CTYRAG	2 cut(s)	365, 829
SpeI	ACTAGT	1 cut(s)	398
Sse9I	AATT	7 cut(s)	303, 931, 966, 997, 1046, 1156, 1285
SsiI	CCGC	3 cut(s)	262, 772, 1172
SspI	AATATT	1 cut(s)	1141
SspMI	CTAG	1 cut(s)	399
StyD4I	CCNGG	1 cut(s)	1145
TaaI	ACNGT	1 cut(s)	718
TaiI	ACGT	2 cut(s)	579, 1248
TaqI	TCGA	1 cut(s)	1129
TasI	AATT	7 cut(s)	303, 931, 966, 997, 1046, 1156, 1285
TatI	WGTACW	1 cut(s)	634
TauI	GCSGC	1 cut(s)	1174
TfiI	GAWTC	4 cut(s)	389, 806, 834, 1015
Tru1I	TTAA	8 cut(s)	90, 204, 543, 930, 1073, 1137, 1160, 1280
Tru9I	TTAA	8 cut(s)	90, 204, 543, 930, 1073, 1137, 1160, 1280
TscAI	CASTG	2 cut(s)	43, 1272
TseFI	GTSAC	1 cut(s)	448
TseI	GCWGC	1 cut(s)	1193
Tsp45I	GTSAC	1 cut(s)	448
TspDTI	ATGAA	7 cut(s)	345, 375, 450, 491, 802, 819, 861
TspGWI	ACGGA	1 cut(s)	302
TspRI	CASTG	2 cut(s)	43, 1272
VneI	GTGCAC	1 cut(s)	817
VpaK11BI	GGWCC	1 cut(s)	51
XapI	RAATTY	2 cut(s)	997, 1285
XceI	RCATGY	1 cut(s)	789
XspI	CTAG	1 cut(s)	399
Zsp2I	ATGCAT	1 cut(s)	615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.