Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000522

Physical Location & Seq

Genomic Coordinates Forward (+)

42162931 .. 42163125

Gene Structure 195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1307400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGCCTAAGAACAAAAAGAAGGAGAGAAAACTGCTCGATAATCAGATCAACGTTGATGACGTGTTGGTCAAGGAAATAATGACTGTCAGTCAGGACGAAAGTGGGAACTTCACCACCATAAATGACGCCGTTGCAGCCACTCCAAACAAGTCTGAAGCCTCTAAAGGTTACTTCTTGATTTACATCAAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005623 GO:0008150 GO:0016787 GO:0016788 GO:0030234 GO:0030599 GO:0043086 GO:0044092 GO:0044464 GO:0046910 GO:0050790 GO:0052689 GO:0065007 GO:0065009 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

PMEI Pectinesterase

Protein Analysis

65

Amino Acids

7.17

Weight (kDa)

7.96

Isoelectric Point (pI)

25.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02810 AT2G47550 AT4G02330
fragaria_vesca	FvH4_2g25960 FvH4_2g25960 FvH4_2g25970 FvH4_5g35570 FvH4_5g35580 FvH4_5g35590
malus_domestica	MD03G1290900.v1.1 MD03G1291000.v1.1 MD08G1195600.v1.1 MD11G1307400.v1.1 MD11G1307500.v1.1
prunus_persica	Prupe.1G529400_v2.0.a1 Prupe.1G529500_v2.0.a1 Prupe.8G263900_v2.0.a1 Prupe.8G264000_v2.0.a1
pyrus_communis	pycom08g16800
rosa_chinensis	RchiOBHm_Chr6g0294321 RchiOBHm_Chr6g0294331 RchiOBHm_Chr7g0236951 RchiOBHm_Chr7g0236971 RchiOBHm_Chr7g0237041 RchiOBHm_Chr7g0237051
rosa_laevigata	RLG00000001034 RLG00000001035 RLG00000001039 RLG00000001043 RLG00000001045 RLG00000011880 RLG00000011881 RLG00000034181
rosa_multiflora	Rmu_co8086188.1_g000001 Rmu_co8458485.1_g000001 Rmu_sc0000272.1_g000007 Rmu_sc0000272.1_g000009 Rmu_sc0002131.1_g000030 Rmu_sc0002131.1_g000037 Rmu_sc0005369.1_g000005 Rmu_sc0005369.1_g000008 Rmu_sc0007991.1_g000005 Rmu_sc0007991.1_g000013 Rmu_sc0033563.1_g000001
rosa_roxburghii	Rroxscaffold_3G00224540 Rroxscaffold_3G00224600 Rroxscaffold_3G00224650 Rroxscaffold_3G00224660 Rroxscaffold_7G00173470 Rroxscaffold_7G00173480
rosa_rugosa	Rorug06G0243400 Rorug06G0243500 Rorug07G0301200 Rorug07G0301500 Rorug07G0301600
rosa_samantha	Rh6AG356000 Rh6AG356100 Rh6BG362600 Rh6BG362800 Rh6CG370000 Rh6CG370100 Rh6DG356500 Rh6DG356600 Rh7AG456200 Rh7AG456500 Rh7AG457500 Rh7AG457600 Rh7BG427500 Rh7BG427700 Rh7BG428400 Rh7BG428500 Rh7CG475100 Rh7CG475300 Rh7CG475700 Rh7CG475800 Rh7DG444100 Rh7DG444300 Rh7DG444700 Rh7DG444900
rosa_wichuraiana	Rw6G031020 Rw6G031030 Rw7G037870 Rw7G037880 Rw7G037920 Rw7G037940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	65
AclI	AACGTT	1 cut(s)	51
AcuI	CTGAAG	1 cut(s)	174
AcyI	GRCGYC	1 cut(s)	126
AflIII	ACRYGT	1 cut(s)	60
AhdI	GACNNNNNGTC	1 cut(s)	87
AjiI	CACGTC	1 cut(s)	61
ApeKI	GCWGC	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	103
BbvI	GCAGC	1 cut(s)	146
BceAI	ACGGC	1 cut(s)	113
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
BmeRI	GACNNNNNGTC	1 cut(s)	87
BmgBI	CACGTC	1 cut(s)	61
BsaBI	GATNNNNATC	1 cut(s)	182
BsaHI	GRCGYC	1 cut(s)	126
Bse8I	GATNNNNATC	1 cut(s)	182
BseJI	GATNNNNATC	1 cut(s)	182
BseXI	GCAGC	1 cut(s)	146
Bsp143I	GATC	1 cut(s)	45
BssMI	GATC	1 cut(s)	45
BssNI	GRCGYC	1 cut(s)	126
Bst4CI	ACNGT	1 cut(s)	85
BstACI	GRCGYC	1 cut(s)	126
BstDEI	CTNAG	1 cut(s)	6
BstKTI	GATC	1 cut(s)	48
BstMBI	GATC	1 cut(s)	45
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstV1I	GCAGC	1 cut(s)	146
BtrI	CACGTC	1 cut(s)	61
CseI	GACGC	1 cut(s)	134
CviAII	CATG	1 cut(s)	192
CviJI	RGCY	2 cut(s)	137, 158
CviKI_1	RGCY	2 cut(s)	137, 158
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	1 cut(s)	47
DpnII	GATC	1 cut(s)	45
DrdI	GACNNNNNNGTC	1 cut(s)	65
DriI	GACNNNNNGTC	1 cut(s)	87
DseDI	GACNNNNNNGTC	1 cut(s)	65
Eam1105I	GACNNNNNGTC	1 cut(s)	87
Eco57I	CTGAAG	1 cut(s)	174
FaeI	CATG	1 cut(s)	195
FaiI	YATR	2 cut(s)	119, 193
FatI	CATG	1 cut(s)	191
Fnu4HI	GCNGC	1 cut(s)	135
Fsp4HI	GCNGC	1 cut(s)	135
GluI	GCNGC	1 cut(s)	135
HgaI	GACGC	1 cut(s)	134
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	1 cut(s)	195
HphI	GGTGA	1 cut(s)	103
Hpy188I	TCNGA	2 cut(s)	45, 154
Hpy188III	TCNNGA	2 cut(s)	92, 175
HpyAV	CCTTC	1 cut(s)	13
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4IV	ACGT	2 cut(s)	51, 60
HpyCH4V	TGCA	1 cut(s)	134
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	1 cut(s)	6
HpySE526I	ACGT	2 cut(s)	51, 60
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	1 cut(s)	195
Kzo9I	GATC	1 cut(s)	45
LpnPI	CCDG	1 cut(s)	77
Lsp1109I	GCAGC	1 cut(s)	146
MaeII	ACGT	2 cut(s)	51, 60
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	1 cut(s)	47
MboI	GATC	1 cut(s)	45
MnlI	CCTC	1 cut(s)	169
MwoI	GCNNNNNNNGC	1 cut(s)	134
NdeII	GATC	1 cut(s)	45
NlaIII	CATG	1 cut(s)	195
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PkrI	GCNGC	1 cut(s)	136
Psp1406I	AACGTT	1 cut(s)	51
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	1 cut(s)	45
SetI	ASST	3 cut(s)	54, 63, 169
SgeI	CNNG	6 cut(s)	47, 73, 82, 104, 160, 187
TaaI	ACNGT	1 cut(s)	85
TaiI	ACGT	2 cut(s)	54, 63
TaqI	TCGA	1 cut(s)	36
TseI	GCWGC	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.