Rh6CG370100

pectinesterase pectinesterase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000522
Physical Location & Seq
Reverse (-)
55720007 .. 55722207
2201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG370100.1

Sequence Viewer

Length: 1635 bp
ATGGGTTCACAACCATTCTCTGTGTTCAAACTCTCGACTCTCATTCTTCATCTTATTCCCATCCTTTTTGCCTCTCGATCTTTAGCTGCAGAGGCAGGTTGTGAAACTGATCCAGTATCCAAAGAAATCATTTGCGAATTCACCCCTAACCCTTCATATTGCAAGTCCATGCTACCCAACCAAACAAACAATGTGTATGACTACGGCCGTTACGCGGTCCGGAAATCATTATCACAATCCCATAAATTACTTAACTTGGTGAACAAGTATCTCCAACGCAACTCGACTCTCTCCAAAACCGCAATCCTCGCCCTTGAAGATTGCAAGCTTCTTGCAGAACTCAACGTAGATTTTCTTGCAAGCTCCCTACAAACCCTCAACGACAGTAACCGAACACTTCCCAGCTCGAAAGCCGAGGACGTCCATACCTGGCTCAGTGCCGTCCTAACAAACCAGCAAACATGCTTGGATGGAGTACAAGCAACTTCTTCATCATCTTGGAGGAGTATGAAAAATGGACTTTTGCTCTCCAACAACACGAACCTTTATAGTGTTTCTCTAGCTCTGTTCACGAAGGGATGGGTGCCTGAAAATGAGGAAGAGGAGGAGAGGGAGGAGGAGGGGGAGGTGATCACATGGAGGAAACGGCTGCTTCAGAATTTTGGTGACGTGCTGGTGAGGGAGACTGTCACTGTGAGTCAGGACGGAAGTGGGAATTTCACCACCATAACCGACGCTGTTGCCGCAGCTCCGGTTAACACTAAAGGTTTAAATGGTTACTTCTTGATTTATATCAAGGCAGGAGTTTATGAAGAGTATGTGAACATTGCAAATACTAAAAACTATCTGATGATGATTGGTGAGGGCATCAACCAGACTGTCATAACAGGCAATCGGAGTGTTGTAGATGGCTGGACAACTTTCAATTCAGCAACATTTGTGGTAATTGCACCATGGTTTGTAGCAGTGAACATAACCTTCCGCAACACCGCCGGAGCAATCAAACACCAAGCCGTCGCCGTCCGAAACGGTGGAGATTTGTCCGCATTCTATAATTGCAGCTTCGAAGGGTACCAAGACACCTTATACACACATTCCCAAAGACAATTCTACAGAGACTGCAACGTCTACGGAACAGTAGACTTCATATTTGGAAACGCAGCAGCTGTTTTCCAAAAATGTAACATTTACCCCCGGCTTCCGATGCGTGGGCAGTTCAACGCCATTACGGCTCAGGGTCGAGCAGACCCGAATCAAAACACCGGCATTATGATCCACAACTGTACCATCAGAGCATCCGATGACTTGGCTTCGGACAAGGGAACTACCAGGACTTATCTAGGGAGGCCATGGAAGGAATATTCAAGGACTGTGTACATGAAATCCTTCATGGATGGTTGCATAGATAGGGAAGGTTGGAGTAAATGGACTGGAGATTTTGCTTTAAGCACATTGTATTACGCCGAGTATAAATGTCAGGGCCCTGGATCGAACACTAGAAGAAGAGTTACATGGCCAGGTTACCATATATTGAAAAAAGCTAAGCAAGTTAAAAAGTTTACAGTGTCCAAGTTCTTGCTTGGGAAGAAGTGGCTGCCTCAAACTGGAGTGCCATTTTCCGGTGGGTTGATTTAG

Protein Analysis

544

Amino Acids

60.82

Weight (kDa)

8.84

Isoelectric Point (pI)

34.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 44 - 189 1.6e-23 Plant invertase/pectin methylesterase inhibitor
Pectinesterase PF01095 230 - 528 1.6e-135 Pectinesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000522)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02810 AT2G47550 AT4G02330
fragaria_vesca FvH4_2g25960 FvH4_2g25960 FvH4_2g25970 FvH4_5g35570 FvH4_5g35580 FvH4_5g35590
malus_domestica MD03G1290900.v1.1 MD03G1291000.v1.1 MD08G1195600.v1.1 MD11G1307400.v1.1 MD11G1307500.v1.1
prunus_persica Prupe.1G529400_v2.0.a1 Prupe.1G529500_v2.0.a1 Prupe.8G263900_v2.0.a1 Prupe.8G264000_v2.0.a1
pyrus_communis pycom08g16800
rosa_chinensis RchiOBHm_Chr6g0294321 RchiOBHm_Chr6g0294331 RchiOBHm_Chr7g0236951 RchiOBHm_Chr7g0236971 RchiOBHm_Chr7g0237041 RchiOBHm_Chr7g0237051
rosa_laevigata RLG00000001034 RLG00000001035 RLG00000001039 RLG00000001043 RLG00000001045 RLG00000011880 RLG00000011881 RLG00000034181
rosa_multiflora Rmu_co8086188.1_g000001 Rmu_co8458485.1_g000001 Rmu_sc0000272.1_g000007 Rmu_sc0000272.1_g000009 Rmu_sc0002131.1_g000030 Rmu_sc0002131.1_g000037 Rmu_sc0005369.1_g000005 Rmu_sc0005369.1_g000008 Rmu_sc0007991.1_g000005 Rmu_sc0007991.1_g000013 Rmu_sc0033563.1_g000001
rosa_roxburghii Rroxscaffold_3G00224540 Rroxscaffold_3G00224600 Rroxscaffold_3G00224650 Rroxscaffold_3G00224660 Rroxscaffold_7G00173470 Rroxscaffold_7G00173480
rosa_rugosa Rorug06G0243400 Rorug06G0243500 Rorug07G0301200 Rorug07G0301500 Rorug07G0301600
rosa_samantha Rh6AG356000 Rh6AG356100 Rh6BG362600 Rh6BG362800 Rh6CG370000 Rh6CG370100 Rh6DG356500 Rh6DG356600 Rh7AG456200 Rh7AG456500 Rh7AG457500 Rh7AG457600 Rh7BG427500 Rh7BG427700 Rh7BG428400 Rh7BG428500 Rh7CG475100 Rh7CG475300 Rh7CG475700 Rh7CG475800 Rh7DG444100 Rh7DG444300 Rh7DG444700 Rh7DG444900
rosa_wichuraiana Rw6G031020 Rw6G031030 Rw7G037870 Rw7G037880 Rw7G037920 Rw7G037940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1124
AatII GACGTC 1 cut(s) 423
Acc36I ACCTGC 1 cut(s) 86
Acc65I GGTACC 1 cut(s) 1071
AccB1I GGYRCC 2 cut(s) 583, 1071
AccI GTMKAC 2 cut(s) 1128, 1140
AccII CGCG 1 cut(s) 215
AccIII TCCGGA 1 cut(s) 219
AciI CCGC 6 cut(s) 215, 300, 744, 982, 990, 1044
AclWI GGATC 3 cut(s) 104, 1267, 1495
AcoI YGGCCR 2 cut(s) 205, 1514
AcsI RAATTY 3 cut(s) 137, 658, 715
AcuI CTGAAG 1 cut(s) 638
AcyI GRCGYC 1 cut(s) 420
AfaI GTAC 4 cut(s) 477, 1073, 1285, 1376
AfiI CCNNNNNNNGG 4 cut(s) 214, 1208, 1604, 1619
AgsI TTSAA 6 cut(s) 28, 317, 925, 1219, 1365, 1534
AjiI CACGTC 1 cut(s) 670
AjnI CCWGG 4 cut(s) 428, 1328, 1483, 1516
AluBI AGCT 9 cut(s) 86, 328, 363, 405, 563, 749, 1062, 1166, 1541
AluI AGCT 9 cut(s) 86, 328, 363, 405, 563, 749, 1062, 1166, 1541
Alw26I GTCTC 2 cut(s) 677, 1110
AlwI GGATC 3 cut(s) 104, 1267, 1495
AlwNI CAGNNNCTG 2 cut(s) 1119, 1166
Aor13HI TCCGGA 1 cut(s) 219
AoxI GGCC 4 cut(s) 205, 1346, 1480, 1514
ApaI GGGCCC 1 cut(s) 1484
ApeKI GCWGC 7 cut(s) 86, 649, 746, 1059, 1160, 1163, 1594
ApoI RAATTY 3 cut(s) 137, 658, 715
ArsI GACNNNNNNTTYG 2 cut(s) 1133, 1165
Asp700I GAANNNNTTC 1 cut(s) 1385
Asp718I GGTACC 1 cut(s) 1071
AspS9I GGNCC 3 cut(s) 217, 1480, 1481
AsuC2I CCSGG 1 cut(s) 1195
AsuHPI GGTGA 7 cut(s) 133, 271, 640, 677, 688, 712, 872
AsuII TTCGAA 1 cut(s) 1065
AvaII GGWCC 1 cut(s) 217
BaeGI GKGCMC 1 cut(s) 1484
BaeI ACNNNNGTAYC 2 cut(s) 1267, 1300
BalI TGGCCA 1 cut(s) 1516
BanI GGYRCC 2 cut(s) 583, 1071
BanII GRGCYC 1 cut(s) 1484
BarI GAAGNNNNNNTAC 2 cut(s) 1492, 1524
BbvI GCAGC 7 cut(s) 73, 636, 758, 1071, 1172, 1175, 1581
BccI CCATC 6 cut(s) 68, 464, 573, 902, 1295, 1388
BceAI ACGGC 7 cut(s) 192, 220, 425, 662, 998, 1004, 1245
BcgI CGANNNNNNTGC 2 cut(s) 722, 756
BciT130I CCWGG 4 cut(s) 430, 1330, 1485, 1518
BciVI GTATCC 1 cut(s) 127
BclI TGATCA 1 cut(s) 630
BcnI CCSGG 1 cut(s) 1195
BcoDI GTCTC 2 cut(s) 677, 1110
BfaI CTAG 3 cut(s) 560, 1340, 1497
BfmI CTRYAG 2 cut(s) 87, 1111
BfuAI ACCTGC 1 cut(s) 86
BfuI GTATCC 1 cut(s) 127
BglI GCCNNNNNGGC 1 cut(s) 1229
BisI GCNGC 8 cut(s) 87, 650, 744, 747, 1060, 1161, 1164, 1595
BlpI GCTNAGC 1 cut(s) 1542
BlsI GCNGC 8 cut(s) 88, 651, 745, 748, 1061, 1162, 1165, 1596
Bme1390I CCNGG 5 cut(s) 430, 1195, 1330, 1485, 1518
Bme18I GGWCC 1 cut(s) 217
BmgBI CACGTC 1 cut(s) 670
BmgT120I GGNCC 3 cut(s) 217, 1480, 1481
BmiI GGNNCC 3 cut(s) 585, 1073, 1482
BmrFI CCNGG 5 cut(s) 430, 1195, 1330, 1485, 1518
BmsI GCATC 3 cut(s) 876, 1194, 1304
BpmI CTGGAG 2 cut(s) 1452, 1626
Bpu10I CCTNAGC 1 cut(s) 1233
Bpu1102I GCTNAGC 1 cut(s) 1542
Bpu14I TTCGAA 1 cut(s) 1065
BpuMI CCSGG 1 cut(s) 1195
BsaBI GATNNNNATC 1 cut(s) 791
BsaHI GRCGYC 1 cut(s) 420
BsaJI CCNNGG 5 cut(s) 414, 953, 1193, 1349, 1483
BsaWI WCCGGW 3 cut(s) 219, 751, 1619
Bsc4I CCNNNNNNNGG 4 cut(s) 214, 1208, 1604, 1619
Bse118I RCCGGY 1 cut(s) 1262
Bse1I ACTGG 3 cut(s) 113, 1435, 1609
Bse3DI GCAATG 1 cut(s) 825
Bse8I GATNNNNATC 1 cut(s) 791
BseAI TCCGGA 1 cut(s) 219
BseBI CCWGG 4 cut(s) 430, 1330, 1485, 1518
BseDI CCNNGG 5 cut(s) 414, 953, 1193, 1349, 1483
BseGI GGATG 5 cut(s) 60, 475, 584, 1295, 1399
BseJI GATNNNNATC 1 cut(s) 791
BseLI CCNNNNNNNGG 4 cut(s) 214, 1208, 1604, 1619
BseMI GCAATG 1 cut(s) 825
BseMII CTCAG 2 cut(s) 448, 1247
BseNI ACTGG 3 cut(s) 113, 1435, 1609
BseRI GAGGAG 5 cut(s) 517, 617, 620, 629, 632
BseSI GKGCMC 1 cut(s) 1484
BseX3I CGGCCG 1 cut(s) 205
BseXI GCAGC 7 cut(s) 73, 636, 758, 1071, 1172, 1175, 1581
BseYI CCCAGC 1 cut(s) 401
Bsh1236I CGCG 1 cut(s) 215
Bsh1285I CGRYCG 1 cut(s) 208
BshFI GGCC 4 cut(s) 207, 1348, 1482, 1516
BshNI GGYRCC 2 cut(s) 583, 1071
BsiEI CGRYCG 1 cut(s) 208
BsiSI CCGG 6 cut(s) 220, 752, 993, 1195, 1263, 1620
BslI CCNNNNNNNGG 4 cut(s) 214, 1208, 1604, 1619
BsmAI GTCTC 2 cut(s) 677, 1110
BsmI GAATGC 1 cut(s) 1046
BsnI GGCC 4 cut(s) 207, 1348, 1482, 1516
Bsp119I TTCGAA 1 cut(s) 1065
Bsp120I GGGCCC 1 cut(s) 1480
Bsp1286I GDGCHC 1 cut(s) 1484
Bsp13I TCCGGA 1 cut(s) 219
Bsp1407I TGTACA 1 cut(s) 1374
Bsp143I GATC 5 cut(s) 77, 109, 630, 1272, 1487
Bsp1720I GCTNAGC 1 cut(s) 1542
Bsp19I CCATGG 2 cut(s) 953, 1349
BspACI CCGC 6 cut(s) 215, 300, 744, 982, 990, 1044
BspANI GGCC 4 cut(s) 207, 1348, 1482, 1516
BspCNI CTCAG 2 cut(s) 447, 1246
BspEI TCCGGA 1 cut(s) 219
BspFNI CGCG 1 cut(s) 215
BspLI GGNNCC 3 cut(s) 585, 1073, 1482
BspMAI CTGCAG 1 cut(s) 91
BspMI ACCTGC 1 cut(s) 86
BspPI GGATC 3 cut(s) 104, 1267, 1495
BspT104I TTCGAA 1 cut(s) 1065
BspT107I GGYRCC 2 cut(s) 583, 1071
BsrDI GCAATG 1 cut(s) 825
BsrFI RCCGGY 1 cut(s) 1262
BsrGI TGTACA 1 cut(s) 1374
BsrI ACTGG 3 cut(s) 113, 1435, 1609
BssAI RCCGGY 1 cut(s) 1262
BssECI CCNNGG 5 cut(s) 414, 953, 1193, 1349, 1483
BssMI GATC 5 cut(s) 77, 109, 630, 1272, 1487
BssNI GRCGYC 1 cut(s) 420
BssT1I CCWWGG 2 cut(s) 953, 1349
Bst2UI CCWGG 4 cut(s) 430, 1330, 1485, 1518
Bst4CI ACNGT 9 cut(s) 386, 688, 694, 880, 1031, 1138, 1283, 1372, 1564
Bst6I CTCTTC 3 cut(s) 594, 807, 1498
BstACI GRCGYC 1 cut(s) 420
BstAUI TGTACA 1 cut(s) 1374
BstBI TTCGAA 1 cut(s) 1065
BstC8I GCNNGC 2 cut(s) 326, 361
BstDEI CTNAG 3 cut(s) 434, 1233, 1542
BstDSI CCRYGG 2 cut(s) 953, 1349
BstEII GGTNACC 1 cut(s) 1520
BstF5I GGATG 5 cut(s) 60, 475, 584, 1295, 1399
BstFNI CGCG 1 cut(s) 215
BstKTI GATC 5 cut(s) 80, 112, 633, 1275, 1490
BstMAI GTCTC 2 cut(s) 677, 1110
BstMBI GATC 5 cut(s) 77, 109, 630, 1272, 1487
BstMCI CGRYCG 1 cut(s) 208
BstMWI GCNNNNNNNGC 5 cut(s) 92, 308, 743, 1204, 1229
BstNI CCWGG 4 cut(s) 430, 1330, 1485, 1518
BstNSI RCATGY 1 cut(s) 465
BstPI GGTNACC 1 cut(s) 1520
BstSCI CCNGG 5 cut(s) 428, 1193, 1328, 1483, 1516
BstSFI CTRYAG 2 cut(s) 87, 1111
BstSLI GKGCMC 1 cut(s) 1484
BstUI CGCG 1 cut(s) 215
BstV1I GCAGC 7 cut(s) 73, 636, 758, 1071, 1172, 1175, 1581
BstZI CGGCCG 1 cut(s) 205
BsuI GTATCC 1 cut(s) 127
BsuRI GGCC 4 cut(s) 207, 1348, 1482, 1516
BtgI CCRYGG 2 cut(s) 953, 1349
BtrI CACGTC 1 cut(s) 670
BtsCI GGATG 5 cut(s) 60, 475, 584, 1295, 1399
BtsI GCAGTG 1 cut(s) 972
BtsIMutI CAGTG 4 cut(s) 442, 690, 972, 1569
BveI ACCTGC 1 cut(s) 86
Cac8I GCNNGC 2 cut(s) 326, 361
CaiI CAGNNNCTG 2 cut(s) 1119, 1166
Cfr10I RCCGGY 1 cut(s) 1262
Cfr13I GGNCC 3 cut(s) 217, 1480, 1481
CpoI CGGWCCG 1 cut(s) 217
CseI GACGC 1 cut(s) 743
Csp6I GTAC 4 cut(s) 476, 1072, 1284, 1375
CspCI CAANNNNNGTGG 2 cut(s) 921, 956
CspI CGGWCCG 1 cut(s) 217
CviAII CATG 8 cut(s) 169, 462, 636, 954, 1350, 1378, 1390, 1512
CviQI GTAC 4 cut(s) 476, 1072, 1284, 1375
DdeI CTNAG 3 cut(s) 434, 1233, 1542
DpnI GATC 5 cut(s) 79, 111, 632, 1274, 1489
DpnII GATC 5 cut(s) 77, 109, 630, 1272, 1487
DraI TTTAAA 1 cut(s) 771
DrdI GACNNNNNNGTC 1 cut(s) 1124
DseDI GACNNNNNNGTC 1 cut(s) 1124
EaeI YGGCCR 2 cut(s) 205, 1514
EagI CGGCCG 1 cut(s) 205
Eam1104I CTCTTC 3 cut(s) 594, 807, 1498
EarI CTCTTC 3 cut(s) 594, 807, 1498
EclXI CGGCCG 1 cut(s) 205
Eco130I CCWWGG 2 cut(s) 953, 1349
Eco24I GRGCYC 1 cut(s) 1484
Eco47I GGWCC 1 cut(s) 217
Eco52I CGGCCG 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 638
Eco91I GGTNACC 1 cut(s) 1520
EcoO109I RGGNCCY 2 cut(s) 1480, 1481
EcoO65I GGTNACC 1 cut(s) 1520
EcoRI GAATTC 1 cut(s) 137
EcoRII CCWGG 4 cut(s) 428, 1328, 1483, 1516
EcoT14I CCWWGG 2 cut(s) 953, 1349
EcoT38I GRGCYC 1 cut(s) 1484
ErhI CCWWGG 2 cut(s) 953, 1349
FaeI CATG 8 cut(s) 172, 465, 639, 957, 1353, 1381, 1393, 1515
FatI CATG 8 cut(s) 168, 461, 635, 953, 1349, 1377, 1389, 1511
FbaI TGATCA 1 cut(s) 630
FblI GTMKAC 2 cut(s) 1128, 1140
Fnu4HI GCNGC 8 cut(s) 87, 650, 744, 747, 1060, 1161, 1164, 1595
FokI GGATG 5 cut(s) 47, 482, 591, 1282, 1406
FriOI GRGCYC 1 cut(s) 1484
Fsp4HI GCNGC 8 cut(s) 87, 650, 744, 747, 1060, 1161, 1164, 1595
FspBI CTAG 3 cut(s) 560, 1340, 1497
GluI GCNGC 8 cut(s) 87, 650, 744, 747, 1060, 1161, 1164, 1595
GsaI CCCAGC 1 cut(s) 405
GsuI CTGGAG 2 cut(s) 1452, 1626
HaeIII GGCC 4 cut(s) 207, 1348, 1482, 1516
HapII CCGG 6 cut(s) 220, 752, 993, 1195, 1263, 1620
HgaI GACGC 1 cut(s) 743
Hin1I GRCGYC 1 cut(s) 420
Hin1II CATG 8 cut(s) 172, 465, 639, 957, 1353, 1381, 1393, 1515
HincII GTYRAC 1 cut(s) 757
HindII GTYRAC 1 cut(s) 757
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 4 cut(s) 37, 286, 697, 1252
HpaI GTTAAC 1 cut(s) 757
HpaII CCGG 6 cut(s) 220, 752, 993, 1195, 1263, 1620
HphI GGTGA 7 cut(s) 133, 271, 640, 677, 688, 712, 872
Hpy188I TCNGA 8 cut(s) 657, 849, 897, 1025, 1203, 1292, 1300, 1315
Hpy188III TCNNGA 6 cut(s) 34, 75, 220, 571, 701, 784
Hpy99I CGWCG 2 cut(s) 737, 1019
HpyAV CCTTC 7 cut(s) 162, 568, 988, 1061, 1348, 1396, 1406
HpyCH4III ACNGT 9 cut(s) 386, 688, 694, 880, 1031, 1138, 1283, 1372, 1564
HpyCH4IV ACGT 4 cut(s) 345, 420, 669, 1125
HpyF10VI GCNNNNNNNGC 5 cut(s) 92, 308, 743, 1204, 1229
HpyF3I CTNAG 3 cut(s) 434, 1233, 1542
HpySE526I ACGT 4 cut(s) 345, 420, 669, 1125
Hsp92I GRCGYC 1 cut(s) 420
Hsp92II CATG 8 cut(s) 172, 465, 639, 957, 1353, 1381, 1393, 1515
Kpn2I TCCGGA 1 cut(s) 219
KpnI GGTACC 1 cut(s) 1075
Ksp22I TGATCA 1 cut(s) 630
KspAI GTTAAC 1 cut(s) 757
Kzo9I GATC 5 cut(s) 77, 109, 630, 1272, 1487
LmnI GCTCC 3 cut(s) 368, 754, 995
Lsp1109I GCAGC 7 cut(s) 73, 636, 758, 1071, 1172, 1175, 1581
LweI GCATC 3 cut(s) 876, 1194, 1304
MaeI CTAG 3 cut(s) 560, 1340, 1497
MaeII ACGT 4 cut(s) 345, 420, 669, 1125
MaeIII GTNAC 8 cut(s) 209, 386, 665, 688, 776, 1181, 1507, 1520
MalI GATC 5 cut(s) 79, 111, 632, 1274, 1489
MboI GATC 5 cut(s) 77, 109, 630, 1272, 1487
MboII GAAGA 8 cut(s) 38, 329, 480, 611, 824, 1512, 1515, 1597
MhlI GDGCHC 1 cut(s) 1484
MlsI TGGCCA 1 cut(s) 1516
MluCI AATT 8 cut(s) 137, 245, 658, 715, 925, 945, 1054, 1106
MluNI TGGCCA 1 cut(s) 1516
MlyI GAGTC 3 cut(s) 31, 280, 706
MmeI TCCRAC 3 cut(s) 298, 555, 1397
Mox20I TGGCCA 1 cut(s) 1516
MroI TCCGGA 1 cut(s) 219
MroXI GAANNNNTTC 1 cut(s) 1385
MscI TGGCCA 1 cut(s) 1516
MseI TTAA 5 cut(s) 252, 756, 770, 1445, 1551
Msp20I TGGCCA 1 cut(s) 1516
MspA1I CMGCKG 1 cut(s) 1166
MspI CCGG 6 cut(s) 220, 752, 993, 1195, 1263, 1620
MspR9I CCNGG 5 cut(s) 430, 1195, 1330, 1485, 1518
Mva1269I GAATGC 1 cut(s) 1046
MvaI CCWGG 4 cut(s) 430, 1330, 1485, 1518
MvnI CGCG 1 cut(s) 215
MwoI GCNNNNNNNGC 5 cut(s) 92, 308, 743, 1204, 1229
NciI CCSGG 1 cut(s) 1195
NcoI CCATGG 2 cut(s) 953, 1349
NdeII GATC 5 cut(s) 77, 109, 630, 1272, 1487
NlaIII CATG 8 cut(s) 172, 465, 639, 957, 1353, 1381, 1393, 1515
NlaIV GGNNCC 3 cut(s) 585, 1073, 1482
NmeAIII GCCGAG 2 cut(s) 439, 1489
NmuCI GTSAC 2 cut(s) 665, 688
NspI RCATGY 1 cut(s) 465
NspV TTCGAA 1 cut(s) 1065
PctI GAATGC 1 cut(s) 1046
PdmI GAANNNNTTC 1 cut(s) 1385
PfeI GAWTC 1 cut(s) 1252
PkrI GCNGC 8 cut(s) 88, 651, 745, 748, 1061, 1162, 1165, 1596
PleI GAGTC 3 cut(s) 31, 280, 705
PpsI GAGTC 3 cut(s) 31, 280, 705
Psp6I CCWGG 4 cut(s) 428, 1328, 1483, 1516
PspEI GGTNACC 1 cut(s) 1520
PspFI CCCAGC 1 cut(s) 401
PspGI CCWGG 4 cut(s) 428, 1328, 1483, 1516
PspN4I GGNNCC 3 cut(s) 585, 1073, 1482
PspOMI GGGCCC 1 cut(s) 1480
PspPI GGNCC 3 cut(s) 217, 1480, 1481
PstI CTGCAG 1 cut(s) 91
PstNI CAGNNNCTG 2 cut(s) 1119, 1166
PvuII CAGCTG 1 cut(s) 1166
RsaI GTAC 4 cut(s) 477, 1073, 1285, 1376
RsaNI GTAC 4 cut(s) 476, 1072, 1284, 1375
Rsr2I CGGWCCG 1 cut(s) 217
RsrII CGGWCCG 1 cut(s) 217
SaqAI TTAA 5 cut(s) 252, 756, 770, 1445, 1551
SatI GCNGC 8 cut(s) 87, 650, 744, 747, 1060, 1161, 1164, 1595
Sau3AI GATC 5 cut(s) 77, 109, 630, 1272, 1487
Sau96I GGNCC 3 cut(s) 217, 1480, 1481
SchI GAGTC 3 cut(s) 31, 280, 706
ScrFI CCNGG 5 cut(s) 430, 1195, 1330, 1485, 1518
SduI GDGCHC 1 cut(s) 1484
SfaNI GCATC 3 cut(s) 876, 1194, 1304
SfcI CTRYAG 2 cut(s) 87, 1111
SfuI TTCGAA 1 cut(s) 1065
SinI GGWCC 1 cut(s) 217
Sse9I AATT 8 cut(s) 137, 245, 658, 715, 925, 945, 1054, 1106
SsiI CCGC 6 cut(s) 215, 300, 744, 982, 990, 1044
SspI AATATT 1 cut(s) 1361
SspMI CTAG 3 cut(s) 560, 1340, 1497
StyD4I CCNGG 5 cut(s) 428, 1193, 1328, 1483, 1516
StyI CCWWGG 2 cut(s) 953, 1349
TaaI ACNGT 9 cut(s) 386, 688, 694, 880, 1031, 1138, 1283, 1372, 1564
TaiI ACGT 4 cut(s) 348, 423, 672, 1128
TaqI TCGA 7 cut(s) 35, 76, 284, 407, 1065, 1240, 1490
TasI AATT 8 cut(s) 137, 245, 658, 715, 925, 945, 1054, 1106
TatI WGTACW 2 cut(s) 475, 1374
TauI GCSGC 1 cut(s) 746
TfiI GAWTC 1 cut(s) 1252
Tru1I TTAA 5 cut(s) 252, 756, 770, 1445, 1551
Tru9I TTAA 5 cut(s) 252, 756, 770, 1445, 1551
TscAI CASTG 4 cut(s) 442, 697, 972, 1569
TseFI GTSAC 2 cut(s) 665, 688
TseI GCWGC 7 cut(s) 86, 649, 746, 1059, 1160, 1163, 1594
Tsp45I GTSAC 2 cut(s) 665, 688
TspDTI ATGAA 8 cut(s) 38, 144, 480, 524, 825, 1135, 1378, 1394
TspGWI ACGGA 2 cut(s) 720, 1146
TspRI CASTG 4 cut(s) 442, 697, 972, 1569
VpaK11BI GGWCC 1 cut(s) 217
XapI RAATTY 3 cut(s) 137, 658, 715
XceI RCATGY 1 cut(s) 465
XmiI GTMKAC 2 cut(s) 1128, 1140
XmnI GAANNNNTTC 1 cut(s) 1385
XspI CTAG 3 cut(s) 560, 1340, 1497
ZraI GACGTC 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.