Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000522

Physical Location & Seq

Genomic Coordinates Reverse (-)

63732395 .. 63734222

Gene Structure 1828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG475100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1698 bp

ATGGCTTCTTCAAAGCTCTTTCCTCTTGTAACCTTTTCATCAATATTATTTCTCACCATCTTCTCTTTGCTTATCTCTCCATCTCTAGCAGTAGATGTTCCTCTAAGCACTCCTCTTCCATCAGAAACCATATGCAACTCCACTCCACACCCTTCGTACTGCAAATCTGTCCTCCCTCACAAACGCGCCAATGTCTATGACTCGGGGCGCTTTTCAGTTCAACAGTCACTCCTTCAATCCAAAAGCCTTTTGGATTTGCTTGAAAAATATCTCCAAGGTCGGCGTTCCAGTCTAACCCTACCCGCAATCCAAGCCCTTGAGGATTGTCACTTCCTTGCTTCGTTAAACATTGATTTTTTGTCGCATTCCCTCGGAACCATTGGCCAAACTAGTAATGTTCTTCCAAGCTCAGATGCTGATGATGTCCAAACCTTGCTCAGTGCCATTTTAACCAACCAGCAAACTTGTGCTGATGGCCTCAATTCTTTGACCACTGTCCACAACGATCTCATAATCCCACTCTCTAATGGTACAAATTTGTACAGTGTCTCTTTAGCTCTGTTTACAAAGGGTTGGGTGCCAAAGGGTCGCAGAAATAATGTGATACCAAATCAGTCCAACAAGCATCTCAATTTCAGAAAGGGACGATTGTCACTGAAAATGTCAAGCAAAGCACGTGCAGTTTACGATTCAGTTATAAATCGAAGAAGACACCTTCAGGCAGGAGATAATGAAGTTGTGGTGAAAGATATTGTGGTTGTGAGCCAGGATGGAAGTGGAAACTTCACAACCATCAACGATGCTATTAGTGCTGCTCCAAATAACTCTGTTGCTAGTGATGGGTACTTCTTGATATATATCACTGCTGGTGTTTATCAAGAGTACGTTTCGATTTCATCAAAAAAGAAATACTTGCTTATGATTGGAGATGGTATCAACCAGACAATCATCACGGGAAACCACAGCGTTGGAGATGGGTGGACCACTTTCAACTCTCCTACTTTTGCTGTGGCGGCTCAAGGATTTGTAGCAGTAAACATTACTTTTCAAAACACGGCTGGACCAAGCAAGGGGCAAGCAGTGGCAGTTAGAAATGATGGCGATTTGTCGGTTTTCTATAGCTGCAGCTTTGACGCCTACCAAGACACGTTGTACACACATTCTATGAGACAATTCTACAGAGAATGTGATATCTATGGAACTGTTGATTTCATTTTCGGCAATGCTGCTGTTGTGTTCCAAAACTGCAACATATACCCTCGTCGTCCCCTCCAAGGCCAATCAAATACCATCACAGCTCAAGGGCGGACCGATGTGAATCAGAATACCGGGATATCAATCCAGAATTGCACAGTTACAGCCGCAGCCGATCTGGCTTCGAGTAGTTTCAGTGTCAAGAATTATCTGGGGAGGCCATGGAAGGAATACTCGAGGACAATTTTCATGCAGGGTTTCATCGATAGTTTTATAGAACCTGCTGGTTGGCTTGCGTGGAATGGAGATTTTGCACTGAGCACATTGTATTATGCTGAGTACAATAATAGAGGGCCTGGATCAAATACTAGCAACAGAGTCACATGGCCTGGTTACCATGTGATCGGTGCAACTGATGCTGCCAACTTTACAGTCTCCAACTTCATATTGGGGGATAATTGGCTGCCTCAGACAGAAGTGCCTTACACTGGTGGCTTAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005623 GO:0008150 GO:0016787 GO:0016788 GO:0030234 GO:0030599 GO:0043086 GO:0044092 GO:0044464 GO:0046910 GO:0050790 GO:0052689 GO:0065007 GO:0065009 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

PMEI Pectinesterase

Protein Analysis

565

Amino Acids

61.75

Weight (kDa)

7.12

Isoelectric Point (pI)

42.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	42 - 187	5e-23	Plant invertase/pectin methylesterase inhibitor
Pectinesterase	PF01095	252 - 550	8.1e-139	Pectinesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02810 AT2G47550 AT4G02330
fragaria_vesca	FvH4_2g25960 FvH4_2g25960 FvH4_2g25970 FvH4_5g35570 FvH4_5g35580 FvH4_5g35590
malus_domestica	MD03G1290900.v1.1 MD03G1291000.v1.1 MD08G1195600.v1.1 MD11G1307400.v1.1 MD11G1307500.v1.1
prunus_persica	Prupe.1G529400_v2.0.a1 Prupe.1G529500_v2.0.a1 Prupe.8G263900_v2.0.a1 Prupe.8G264000_v2.0.a1
pyrus_communis	pycom08g16800
rosa_chinensis	RchiOBHm_Chr6g0294321 RchiOBHm_Chr6g0294331 RchiOBHm_Chr7g0236951 RchiOBHm_Chr7g0236971 RchiOBHm_Chr7g0237041 RchiOBHm_Chr7g0237051
rosa_laevigata	RLG00000001034 RLG00000001035 RLG00000001039 RLG00000001043 RLG00000001045 RLG00000011880 RLG00000011881 RLG00000034181
rosa_multiflora	Rmu_co8086188.1_g000001 Rmu_co8458485.1_g000001 Rmu_sc0000272.1_g000007 Rmu_sc0000272.1_g000009 Rmu_sc0002131.1_g000030 Rmu_sc0002131.1_g000037 Rmu_sc0005369.1_g000005 Rmu_sc0005369.1_g000008 Rmu_sc0007991.1_g000005 Rmu_sc0007991.1_g000013 Rmu_sc0033563.1_g000001
rosa_roxburghii	Rroxscaffold_3G00224540 Rroxscaffold_3G00224600 Rroxscaffold_3G00224650 Rroxscaffold_3G00224660 Rroxscaffold_7G00173470 Rroxscaffold_7G00173480
rosa_rugosa	Rorug06G0243400 Rorug06G0243500 Rorug07G0301200 Rorug07G0301500 Rorug07G0301600
rosa_samantha	Rh6AG356000 Rh6AG356100 Rh6BG362600 Rh6BG362800 Rh6CG370000 Rh6CG370100 Rh6DG356500 Rh6DG356600 Rh7AG456200 Rh7AG456500 Rh7AG457500 Rh7AG457600 Rh7BG427500 Rh7BG427700 Rh7BG428400 Rh7BG428500 Rh7CG475100 Rh7CG475300 Rh7CG475700 Rh7CG475800 Rh7DG444100 Rh7DG444300 Rh7DG444700 Rh7DG444900
rosa_wichuraiana	Rw6G031020 Rw6G031030 Rw7G037870 Rw7G037880 Rw7G037920 Rw7G037940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	698
Acc36I	ACCTGC	1 cut(s)	1483
AccB1I	GGYRCC	1 cut(s)	577
AccII	CGCG	1 cut(s)	186
AciI	CCGC	4 cut(s)	303, 1013, 1306, 1362
AclWI	GGATC	1 cut(s)	1561
AcoI	YGGCCR	1 cut(s)	382
AcsI	RAATTY	1 cut(s)	535
AcuI	CTGAAG	1 cut(s)	701
AcvI	CACGTG	1 cut(s)	677
AcyI	GRCGYC	1 cut(s)	1134
AfaI	GTAC	7 cut(s)	158, 532, 542, 845, 884, 1154, 1535
AfiI	CCNNNNNNNGG	3 cut(s)	1070, 1274, 1682
AflIII	ACRYGT	1 cut(s)	1146
AgsI	TTSAA	6 cut(s)	12, 221, 236, 263, 991, 1049
AhlI	ACTAGT	1 cut(s)	389
AjnI	CCWGG	3 cut(s)	765, 1549, 1582
AluBI	AGCT	6 cut(s)	16, 408, 557, 1122, 1128, 1298
AluI	AGCT	6 cut(s)	16, 408, 557, 1122, 1128, 1298
Alw21I	GWGCWC	1 cut(s)	1517
Alw26I	GTCTC	3 cut(s)	553, 1162, 1633
AlwI	GGATC	1 cut(s)	1561
AlwNI	CAGNNNCTG	1 cut(s)	416
Ama87I	CYCGRG	2 cut(s)	202, 1429
AoxI	GGCC	6 cut(s)	382, 475, 1276, 1412, 1547, 1580
ApeKI	GCWGC	7 cut(s)	812, 1122, 1125, 1226, 1364, 1613, 1657
ApoI	RAATTY	1 cut(s)	535
AspLEI	GCGC	2 cut(s)	188, 210
AspS9I	GGNCC	4 cut(s)	981, 1061, 1308, 1547
AsuC2I	CCSGG	1 cut(s)	1330
AsuHPI	GGTGA	2 cut(s)	46, 754
AvaI	CYCGRG	2 cut(s)	202, 1429
AvaII	GGWCC	3 cut(s)	981, 1061, 1308
BalI	TGGCCA	1 cut(s)	384
BanI	GGYRCC	1 cut(s)	577
BbrPI	CACGTG	1 cut(s)	677
BbsI	GAAGAC	1 cut(s)	715
Bbv12I	GWGCWC	1 cut(s)	1517
BbvI	GCAGC	7 cut(s)	799, 1109, 1137, 1213, 1376, 1600, 1644
BceAI	ACGGC	1 cut(s)	1071
BciT130I	CCWGG	3 cut(s)	767, 1551, 1584
BcnI	CCSGG	1 cut(s)	1330
BcoDI	GTCTC	3 cut(s)	553, 1162, 1633
BcuI	ACTAGT	1 cut(s)	389
BfaI	CTAG	4 cut(s)	86, 390, 834, 1563
BfmI	CTRYAG	3 cut(s)	1117, 1123, 1177
BfoI	RGCGCY	1 cut(s)	211
BfuAI	ACCTGC	1 cut(s)	1483
BglI	GCCNNNNNGGC	1 cut(s)	1373
BisI	GCNGC	9 cut(s)	813, 1014, 1123, 1126, 1227, 1362, 1365, 1614, 1658
BlsI	GCNGC	9 cut(s)	814, 1015, 1124, 1127, 1228, 1363, 1366, 1615, 1659
Bme1390I	CCNGG	4 cut(s)	767, 1330, 1551, 1584
Bme18I	GGWCC	3 cut(s)	981, 1061, 1308
BmeT110I	CYCGRG	2 cut(s)	202, 1429
BmgT120I	GGNCC	4 cut(s)	981, 1061, 1308, 1547
BmiI	GGNNCC	2 cut(s)	376, 579
BmrFI	CCNGG	4 cut(s)	767, 1330, 1551, 1584
BmsI	GCATC	4 cut(s)	403, 634, 790, 1600
BoxI	GACNNNNGTC	2 cut(s)	494, 649
BpiI	GAAGAC	1 cut(s)	715
BpuEI	CTTGAG	3 cut(s)	338, 1002, 1284
BpuMI	CCSGG	1 cut(s)	1330
Bsa29I	ATCGAT	1 cut(s)	1458
BsaAI	YACGTR	1 cut(s)	677
BsaBI	GATNNNNATC	3 cut(s)	857, 1317, 1337
BsaHI	GRCGYC	1 cut(s)	1134
BsaJI	CCNNGG	4 cut(s)	274, 370, 1273, 1415
BsaXI	ACNNNNNCTCC	2 cut(s)	213, 243
Bsc4I	CCNNNNNNNGG	3 cut(s)	1070, 1274, 1682
Bse1I	ACTGG	2 cut(s)	288, 1687
Bse3DI	GCAATG	1 cut(s)	1228
Bse8I	GATNNNNATC	3 cut(s)	857, 1317, 1337
BseBI	CCWGG	3 cut(s)	767, 1551, 1584
BseCI	ATCGAT	1 cut(s)	1458
BseDI	CCNNGG	4 cut(s)	274, 370, 1273, 1415
BseGI	GGATG	1 cut(s)	775
BseJI	GATNNNNATC	3 cut(s)	857, 1317, 1337
BseLI	CCNNNNNNNGG	3 cut(s)	1070, 1274, 1682
BseMI	GCAATG	1 cut(s)	1228
BseMII	CTCAG	5 cut(s)	423, 451, 1502, 1521, 1676
BseNI	ACTGG	2 cut(s)	288, 1687
BseRI	GAGGAG	1 cut(s)	102
BseXI	GCAGC	7 cut(s)	799, 1109, 1137, 1213, 1376, 1600, 1644
BsgI	GTGCAG	1 cut(s)	699
Bsh1236I	CGCG	1 cut(s)	186
BshFI	GGCC	6 cut(s)	384, 477, 1278, 1414, 1549, 1582
BshNI	GGYRCC	1 cut(s)	577
BshVI	ATCGAT	1 cut(s)	1458
BsiHKAI	GWGCWC	1 cut(s)	1517
BsiHKCI	CYCGRG	2 cut(s)	202, 1429
BsiSI	CCGG	1 cut(s)	1329
BslFI	GGGAC	2 cut(s)	657, 1251
BslI	CCNNNNNNNGG	3 cut(s)	1070, 1274, 1682
BsmAI	GTCTC	3 cut(s)	553, 1162, 1633
BsmFI	GGGAC	2 cut(s)	657, 1251
BsmI	GAATGC	1 cut(s)	364
BsnI	GGCC	6 cut(s)	384, 477, 1278, 1414, 1549, 1582
BsoBI	CYCGRG	2 cut(s)	202, 1429
Bsp1286I	GDGCHC	1 cut(s)	1517
Bsp1407I	TGTACA	2 cut(s)	540, 1152
Bsp143I	GATC	4 cut(s)	505, 1369, 1553, 1596
Bsp19I	CCATGG	1 cut(s)	1415
BspACI	CCGC	4 cut(s)	303, 1013, 1306, 1362
BspANI	GGCC	6 cut(s)	384, 477, 1278, 1414, 1549, 1582
BspCNI	CTCAG	5 cut(s)	422, 450, 1503, 1522, 1675
BspDI	ATCGAT	1 cut(s)	1458
BspFNI	CGCG	1 cut(s)	186
BspLI	GGNNCC	2 cut(s)	376, 579
BspMAI	CTGCAG	1 cut(s)	1127
BspMI	ACCTGC	1 cut(s)	1483
BspPI	GGATC	1 cut(s)	1561
BspT107I	GGYRCC	1 cut(s)	577
BsrDI	GCAATG	1 cut(s)	1228
BsrGI	TGTACA	2 cut(s)	540, 1152
BsrI	ACTGG	2 cut(s)	288, 1687
BssECI	CCNNGG	4 cut(s)	274, 370, 1273, 1415
BssMI	GATC	4 cut(s)	505, 1369, 1553, 1596
BssNI	GRCGYC	1 cut(s)	1134
BssT1I	CCWWGG	3 cut(s)	274, 1273, 1415
Bst2UI	CCWGG	3 cut(s)	767, 1551, 1584
Bst4CI	ACNGT	6 cut(s)	225, 496, 545, 1204, 1354, 1627
Bst6I	CTCTTC	1 cut(s)	120
BstACI	GRCGYC	1 cut(s)	1134
BstAPI	GCANNNNNTGC	1 cut(s)	1610
BstAUI	TGTACA	2 cut(s)	540, 1152
BstBAI	YACGTR	1 cut(s)	677
BstC8I	GCNNGC	2 cut(s)	1077, 1488
BstDEI	CTNAG	6 cut(s)	104, 409, 437, 1511, 1530, 1662
BstDSI	CCRYGG	1 cut(s)	1415
BstEII	GGTNACC	1 cut(s)	1586
BstF5I	GGATG	1 cut(s)	775
BstFNI	CGCG	1 cut(s)	186
BstH2I	RGCGCY	1 cut(s)	211
BstHHI	GCGC	2 cut(s)	188, 210
BstKTI	GATC	4 cut(s)	508, 1372, 1556, 1599
BstMAI	GTCTC	3 cut(s)	553, 1162, 1633
BstMBI	GATC	4 cut(s)	505, 1369, 1553, 1596
BstMWI	GCNNNNNNNGC	5 cut(s)	311, 809, 1013, 1373, 1610
BstNI	CCWGG	3 cut(s)	767, 1551, 1584
BstPAI	GACNNNNGTC	2 cut(s)	494, 649
BstPI	GGTNACC	1 cut(s)	1586
BstSCI	CCNGG	4 cut(s)	765, 1328, 1549, 1582
BstSFI	CTRYAG	3 cut(s)	1117, 1123, 1177
BstUI	CGCG	1 cut(s)	186
BstV1I	GCAGC	7 cut(s)	799, 1109, 1137, 1213, 1376, 1600, 1644
BstV2I	GAAGAC	1 cut(s)	715
BstXI	CCANNNNNNTGG	1 cut(s)	968
Bsu15I	ATCGAT	1 cut(s)	1458
BsuRI	GGCC	6 cut(s)	384, 477, 1278, 1414, 1549, 1582
BsuTUI	ATCGAT	1 cut(s)	1458
BtgI	CCRYGG	1 cut(s)	1415
BtsCI	GGATG	1 cut(s)	775
BtsI	GCAGTG	2 cut(s)	861, 1086
BtsIMutI	CAGTG	9 cut(s)	445, 492, 550, 653, 861, 1086, 1396, 1508, 1680
BveI	ACCTGC	1 cut(s)	1483
Cac8I	GCNNGC	2 cut(s)	1077, 1488
CaiI	CAGNNNCTG	1 cut(s)	416
CfoI	GCGC	2 cut(s)	188, 210
Cfr13I	GGNCC	4 cut(s)	981, 1061, 1308, 1547
ClaI	ATCGAT	1 cut(s)	1458
CpoI	CGGWCCG	1 cut(s)	1308
CseI	GACGC	1 cut(s)	1142
Csp6I	GTAC	7 cut(s)	157, 531, 541, 844, 883, 1153, 1534
CspI	CGGWCCG	1 cut(s)	1308
CviAII	CATG	4 cut(s)	1416, 1444, 1578, 1592
CviQI	GTAC	7 cut(s)	157, 531, 541, 844, 883, 1153, 1534
DdeI	CTNAG	6 cut(s)	104, 409, 437, 1511, 1530, 1662
DpnI	GATC	4 cut(s)	507, 1371, 1555, 1598
DpnII	GATC	4 cut(s)	505, 1369, 1553, 1596
EaeI	YGGCCR	1 cut(s)	382
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
EciI	GGCGGA	1 cut(s)	1321
Eco130I	CCWWGG	3 cut(s)	274, 1273, 1415
Eco32I	GATATC	2 cut(s)	1192, 1335
Eco47I	GGWCC	3 cut(s)	981, 1061, 1308
Eco57I	CTGAAG	1 cut(s)	701
Eco72I	CACGTG	1 cut(s)	677
Eco88I	CYCGRG	2 cut(s)	202, 1429
Eco91I	GGTNACC	1 cut(s)	1586
EcoO109I	RGGNCCY	1 cut(s)	1547
EcoO65I	GGTNACC	1 cut(s)	1586
EcoRII	CCWGG	3 cut(s)	765, 1549, 1582
EcoRV	GATATC	2 cut(s)	1192, 1335
EcoT14I	CCWWGG	3 cut(s)	274, 1273, 1415
ErhI	CCWWGG	3 cut(s)	274, 1273, 1415
FaeI	CATG	4 cut(s)	1419, 1447, 1581, 1595
FalI	AAGNNNNNCTT	2 cut(s)	896, 928
FaqI	GGGAC	2 cut(s)	657, 1251
FatI	CATG	4 cut(s)	1415, 1443, 1577, 1591
FauI	CCCGC	1 cut(s)	310
FauNDI	CATATG	1 cut(s)	131
Fnu4HI	GCNGC	9 cut(s)	813, 1014, 1123, 1126, 1227, 1362, 1365, 1614, 1658
FokI	GGATG	1 cut(s)	782
Fsp4HI	GCNGC	9 cut(s)	813, 1014, 1123, 1126, 1227, 1362, 1365, 1614, 1658
FspBI	CTAG	4 cut(s)	86, 390, 834, 1563
GlaI	GCGC	2 cut(s)	187, 209
GluI	GCNGC	9 cut(s)	813, 1014, 1123, 1126, 1227, 1362, 1365, 1614, 1658
HaeII	RGCGCY	1 cut(s)	211
HaeIII	GGCC	6 cut(s)	384, 477, 1278, 1414, 1549, 1582
HapII	CCGG	1 cut(s)	1329
HgaI	GACGC	1 cut(s)	1142
HhaI	GCGC	2 cut(s)	188, 210
Hin1I	GRCGYC	1 cut(s)	1134
Hin1II	CATG	4 cut(s)	1419, 1447, 1581, 1595
Hin6I	GCGC	2 cut(s)	186, 208
HinP1I	GCGC	2 cut(s)	186, 208
HinfI	GANTC	4 cut(s)	200, 689, 1318, 1572
HpaII	CCGG	1 cut(s)	1329
HphI	GGTGA	2 cut(s)	46, 754
Hpy166II	GTNNAC	6 cut(s)	499, 564, 685, 981, 1036, 1155
Hpy188I	TCNGA	6 cut(s)	124, 374, 412, 638, 1323, 1665
Hpy188III	TCNNGA	4 cut(s)	850, 878, 1342, 1396
Hpy8I	GTNNAC	6 cut(s)	499, 564, 685, 981, 1036, 1155
Hpy99I	CGWCG	1 cut(s)	1266
HpyAV	CCTTC	4 cut(s)	162, 242, 725, 1414
HpyCH4III	ACNGT	6 cut(s)	225, 496, 545, 1204, 1354, 1627
HpyCH4IV	ACGT	3 cut(s)	676, 885, 1148
HpyCH4V	TGCA	9 cut(s)	135, 162, 680, 1125, 1248, 1350, 1447, 1508, 1604
HpyF10VI	GCNNNNNNNGC	5 cut(s)	311, 809, 1013, 1373, 1610
HpyF3I	CTNAG	6 cut(s)	104, 409, 437, 1511, 1530, 1662
HpySE526I	ACGT	3 cut(s)	676, 885, 1148
Hsp92I	GRCGYC	1 cut(s)	1134
Hsp92II	CATG	4 cut(s)	1419, 1447, 1581, 1595
HspAI	GCGC	2 cut(s)	186, 208
Kzo9I	GATC	4 cut(s)	505, 1369, 1553, 1596
LmnI	GCTCC	1 cut(s)	820
Lsp1109I	GCAGC	7 cut(s)	799, 1109, 1137, 1213, 1376, 1600, 1644
LweI	GCATC	4 cut(s)	403, 634, 790, 1600
MaeI	CTAG	4 cut(s)	86, 390, 834, 1563
MaeII	ACGT	3 cut(s)	676, 885, 1148
MaeIII	GTNAC	7 cut(s)	28, 225, 326, 651, 1354, 1573, 1586
MalI	GATC	4 cut(s)	507, 1371, 1555, 1598
MboI	GATC	4 cut(s)	505, 1369, 1553, 1596
MboII	GAAGA	5 cut(s)	52, 107, 392, 717, 720
MhlI	GDGCHC	1 cut(s)	1517
MlsI	TGGCCA	1 cut(s)	384
MluCI	AATT	9 cut(s)	481, 535, 631, 1172, 1345, 1399, 1437, 1651, 1692
MluNI	TGGCCA	1 cut(s)	384
MlyI	GAGTC	2 cut(s)	194, 1581
MmeI	TCCRAC	3 cut(s)	642, 949, 1656
Mox20I	TGGCCA	1 cut(s)	384
MscI	TGGCCA	1 cut(s)	384
MseI	TTAA	3 cut(s)	344, 449, 1691
Msp20I	TGGCCA	1 cut(s)	384
MspI	CCGG	1 cut(s)	1329
MspR9I	CCNGG	4 cut(s)	767, 1330, 1551, 1584
Mva1269I	GAATGC	1 cut(s)	364
MvaI	CCWGG	3 cut(s)	767, 1551, 1584
MvnI	CGCG	1 cut(s)	186
MwoI	GCNNNNNNNGC	5 cut(s)	311, 809, 1013, 1373, 1610
NciI	CCSGG	1 cut(s)	1330
NcoI	CCATGG	1 cut(s)	1415
NdeI	CATATG	1 cut(s)	131
NdeII	GATC	4 cut(s)	505, 1369, 1553, 1596
NlaIII	CATG	4 cut(s)	1419, 1447, 1581, 1595
NlaIV	GGNNCC	2 cut(s)	376, 579
NmuCI	GTSAC	4 cut(s)	225, 326, 651, 1573
PaeR7I	CTCGAG	1 cut(s)	1429
PctI	GAATGC	1 cut(s)	364
PfeI	GAWTC	2 cut(s)	689, 1318
PkrI	GCNGC	9 cut(s)	814, 1015, 1124, 1127, 1228, 1363, 1366, 1615, 1659
PleI	GAGTC	2 cut(s)	194, 1580
PmaCI	CACGTG	1 cut(s)	677
PmlI	CACGTG	1 cut(s)	677
PpsI	GAGTC	2 cut(s)	194, 1580
Ppu21I	YACGTR	1 cut(s)	677
PshAI	GACNNNNGTC	2 cut(s)	494, 649
PsiI	TTATAA	1 cut(s)	698
Psp6I	CCWGG	3 cut(s)	765, 1549, 1582
PspCI	CACGTG	1 cut(s)	677
PspEI	GGTNACC	1 cut(s)	1586
PspGI	CCWGG	3 cut(s)	765, 1549, 1582
PspN4I	GGNNCC	2 cut(s)	376, 579
PspPI	GGNCC	4 cut(s)	981, 1061, 1308, 1547
PspXI	VCTCGAGB	1 cut(s)	1429
PstI	CTGCAG	1 cut(s)	1127
PstNI	CAGNNNCTG	1 cut(s)	416
RsaI	GTAC	7 cut(s)	158, 532, 542, 845, 884, 1154, 1535
RsaNI	GTAC	7 cut(s)	157, 531, 541, 844, 883, 1153, 1534
Rsr2I	CGGWCCG	1 cut(s)	1308
RsrII	CGGWCCG	1 cut(s)	1308
SaqAI	TTAA	3 cut(s)	344, 449, 1691
SatI	GCNGC	9 cut(s)	813, 1014, 1123, 1126, 1227, 1362, 1365, 1614, 1658
Sau3AI	GATC	4 cut(s)	505, 1369, 1553, 1596
Sau96I	GGNCC	4 cut(s)	981, 1061, 1308, 1547
SchI	GAGTC	2 cut(s)	194, 1581
ScrFI	CCNGG	4 cut(s)	767, 1330, 1551, 1584
SduI	GDGCHC	1 cut(s)	1517
SfaNI	GCATC	4 cut(s)	403, 634, 790, 1600
SfcI	CTRYAG	3 cut(s)	1117, 1123, 1177
Sfr274I	CTCGAG	1 cut(s)	1429
SinI	GGWCC	3 cut(s)	981, 1061, 1308
SlaI	CTCGAG	1 cut(s)	1429
SmlI	CTYRAG	4 cut(s)	317, 1017, 1299, 1429
SmoI	CTYRAG	4 cut(s)	317, 1017, 1299, 1429
SpeI	ACTAGT	1 cut(s)	389
Sse9I	AATT	9 cut(s)	481, 535, 631, 1172, 1345, 1399, 1437, 1651, 1692
SsiI	CCGC	4 cut(s)	303, 1013, 1306, 1362
SspI	AATATT	1 cut(s)	45
SspMI	CTAG	4 cut(s)	86, 390, 834, 1563
StyD4I	CCNGG	4 cut(s)	765, 1328, 1549, 1582
StyI	CCWWGG	3 cut(s)	274, 1273, 1415
TaaI	ACNGT	6 cut(s)	225, 496, 545, 1204, 1354, 1627
TaiI	ACGT	3 cut(s)	679, 888, 1151
TaqI	TCGA	5 cut(s)	703, 890, 1379, 1430, 1458
TaqII	GACCGA	1 cut(s)	1325
TasI	AATT	9 cut(s)	481, 535, 631, 1172, 1345, 1399, 1437, 1651, 1692
TatI	WGTACW	3 cut(s)	540, 1152, 1533
TauI	GCSGC	2 cut(s)	1016, 1364
TfiI	GAWTC	2 cut(s)	689, 1318
Tru1I	TTAA	3 cut(s)	344, 449, 1691
Tru9I	TTAA	3 cut(s)	344, 449, 1691
TscAI	CASTG	9 cut(s)	445, 499, 550, 660, 868, 1086, 1396, 1515, 1687
TseFI	GTSAC	4 cut(s)	225, 326, 651, 1573
TseI	GCWGC	7 cut(s)	812, 1122, 1125, 1226, 1364, 1613, 1657
Tsp45I	GTSAC	4 cut(s)	225, 326, 651, 1573
TspDTI	ATGAA	7 cut(s)	27, 747, 885, 1201, 1432, 1444, 1627
TspRI	CASTG	9 cut(s)	445, 499, 550, 660, 868, 1086, 1396, 1515, 1687
VpaK11BI	GGWCC	3 cut(s)	981, 1061, 1308
XapI	RAATTY	1 cut(s)	535
XcmI	CCANNNNNNNNNTGG	3 cut(s)	247, 773, 1639
XhoI	CTCGAG	1 cut(s)	1429
XspI	CTAG	4 cut(s)	86, 390, 834, 1563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.