Rorug07G0301200

pectinesterase pectinesterase inhibitor

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
29880990 .. 29881364
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0301200.1

Sequence Viewer

Length: 375 bp
ATGAGTAGCATTGTGAAGAAGCTCTTGTTCTGTGGAGCAAAAGGGTTTCCCTCCATTTCAGACTCAGACGACTCTCGATTAGTGCCTATGACACAAGCTGGTCAAGTCCGTGTGTGTGTTGGAAGAGACATTGATCTGATGTGCAAGTTTGAGATGGAAGCCAATTACCTAAACCACCCACTCTTCCAGAGTCTACTGGAGCTCTCCGCCGAGCAAGAGTTCGGTTATTCCTACGATGGAGCCCTAAGAATAGCGTGTGATGTCGATCTGTTCCACTATCTTCTTCATCTCCTTGAAACCAGCAATCCCTCCGCCCATTACATGGAGCTTTCCGATCTCATTTCCAAGTTCTACACTAATGCTATCTACAATTAG

Protein Analysis

124

Amino Acids

14.03

Weight (kDa)

4.85

Isoelectric Point (pI)

42.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 23 - 98 6.1e-15 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000522)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02810 AT2G47550 AT4G02330
fragaria_vesca FvH4_2g25960 FvH4_2g25960 FvH4_2g25970 FvH4_5g35570 FvH4_5g35580 FvH4_5g35590
malus_domestica MD03G1290900.v1.1 MD03G1291000.v1.1 MD08G1195600.v1.1 MD11G1307400.v1.1 MD11G1307500.v1.1
prunus_persica Prupe.1G529400_v2.0.a1 Prupe.1G529500_v2.0.a1 Prupe.8G263900_v2.0.a1 Prupe.8G264000_v2.0.a1
pyrus_communis pycom08g16800
rosa_chinensis RchiOBHm_Chr6g0294321 RchiOBHm_Chr6g0294331 RchiOBHm_Chr7g0236951 RchiOBHm_Chr7g0236971 RchiOBHm_Chr7g0237041 RchiOBHm_Chr7g0237051
rosa_laevigata RLG00000001034 RLG00000001035 RLG00000001039 RLG00000001043 RLG00000001045 RLG00000011880 RLG00000011881 RLG00000034181
rosa_multiflora Rmu_co8086188.1_g000001 Rmu_co8458485.1_g000001 Rmu_sc0000272.1_g000007 Rmu_sc0000272.1_g000009 Rmu_sc0002131.1_g000030 Rmu_sc0002131.1_g000037 Rmu_sc0005369.1_g000005 Rmu_sc0005369.1_g000008 Rmu_sc0007991.1_g000005 Rmu_sc0007991.1_g000013 Rmu_sc0033563.1_g000001
rosa_roxburghii Rroxscaffold_3G00224540 Rroxscaffold_3G00224600 Rroxscaffold_3G00224650 Rroxscaffold_3G00224660 Rroxscaffold_7G00173470 Rroxscaffold_7G00173480
rosa_rugosa Rorug06G0243400 Rorug06G0243500 Rorug07G0301200 Rorug07G0301500 Rorug07G0301600
rosa_samantha Rh6AG356000 Rh6AG356100 Rh6BG362600 Rh6BG362800 Rh6CG370000 Rh6CG370100 Rh6DG356500 Rh6DG356600 Rh7AG456200 Rh7AG456500 Rh7AG457500 Rh7AG457600 Rh7BG427500 Rh7BG427700 Rh7BG428400 Rh7BG428500 Rh7CG475100 Rh7CG475300 Rh7CG475700 Rh7CG475800 Rh7DG444100 Rh7DG444300 Rh7DG444700 Rh7DG444900
rosa_wichuraiana Rw6G031020 Rw6G031030 Rw7G037870 Rw7G037880 Rw7G037920 Rw7G037940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 322
AccI GTMKAC 1 cut(s) 193
AciI CCGC 2 cut(s) 207, 312
AfiI CCNNNNNNNGG 1 cut(s) 322
AgsI TTSAA 1 cut(s) 296
AluBI AGCT 4 cut(s) 22, 98, 202, 328
AluI AGCT 4 cut(s) 22, 98, 202, 328
Alw21I GWGCWC 1 cut(s) 204
Alw26I GTCTC 1 cut(s) 120
BanII GRGCYC 2 cut(s) 204, 244
Bbv12I GWGCWC 1 cut(s) 204
BccI CCATC 2 cut(s) 148, 230
BcoDI GTCTC 1 cut(s) 120
BmiI GGNNCC 1 cut(s) 241
BpmI CTGGAG 1 cut(s) 218
BsaBI GATNNNNATC 1 cut(s) 264
Bsc4I CCNNNNNNNGG 1 cut(s) 322
Bse1I ACTGG 1 cut(s) 201
Bse8I GATNNNNATC 1 cut(s) 264
BseJI GATNNNNATC 1 cut(s) 264
BseLI CCNNNNNNNGG 1 cut(s) 322
BseMII CTCAG 1 cut(s) 78
BseNI ACTGG 1 cut(s) 201
BsiHKAI GWGCWC 1 cut(s) 204
BslI CCNNNNNNNGG 1 cut(s) 322
BsmAI GTCTC 1 cut(s) 120
Bsp1286I GDGCHC 2 cut(s) 204, 244
Bsp143I GATC 3 cut(s) 133, 265, 334
BspACI CCGC 2 cut(s) 207, 312
BspCNI CTCAG 1 cut(s) 77
BspLI GGNNCC 1 cut(s) 241
BsrI ACTGG 1 cut(s) 201
BssMI GATC 3 cut(s) 133, 265, 334
Bst6I CTCTTC 2 cut(s) 118, 188
BstDEI CTNAG 2 cut(s) 64, 245
BstKTI GATC 3 cut(s) 136, 268, 337
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 3 cut(s) 133, 265, 334
CviAII CATG 1 cut(s) 322
CviJI RGCY 6 cut(s) 22, 98, 161, 202, 242, 328
CviKI_1 RGCY 6 cut(s) 22, 98, 161, 202, 242, 328
DdeI CTNAG 2 cut(s) 64, 245
DpnI GATC 3 cut(s) 135, 267, 336
DpnII GATC 3 cut(s) 133, 265, 334
Eam1104I CTCTTC 2 cut(s) 118, 188
EarI CTCTTC 2 cut(s) 118, 188
EciI GGCGGA 2 cut(s) 196, 301
Ecl136II GAGCTC 1 cut(s) 202
Eco24I GRGCYC 2 cut(s) 204, 244
Eco53kI GAGCTC 1 cut(s) 202
EcoICRI GAGCTC 1 cut(s) 202
EcoT38I GRGCYC 2 cut(s) 204, 244
FaeI CATG 1 cut(s) 325
FaiI YATR 2 cut(s) 89, 323
FalI AAGNNNNNCTT 2 cut(s) 8, 40
FatI CATG 1 cut(s) 321
FblI GTMKAC 1 cut(s) 193
FriOI GRGCYC 2 cut(s) 204, 244
GsuI CTGGAG 1 cut(s) 218
Hin1II CATG 1 cut(s) 325
HinfI GANTC 3 cut(s) 62, 71, 190
Hpy166II GTNNAC 1 cut(s) 194
Hpy188I TCNGA 4 cut(s) 61, 67, 138, 334
Hpy188III TCNNGA 2 cut(s) 75, 187
Hpy8I GTNNAC 1 cut(s) 194
HpyCH4V TGCA 1 cut(s) 144
HpyF3I CTNAG 2 cut(s) 64, 245
Hsp92II CATG 1 cut(s) 325
Kzo9I GATC 3 cut(s) 133, 265, 334
LmnI GCTCC 4 cut(s) 35, 199, 239, 325
LpnPI CCDG 4 cut(s) 84, 182, 200, 313
MalI GATC 3 cut(s) 135, 267, 336
MboI GATC 3 cut(s) 133, 265, 334
MboII GAAGA 5 cut(s) 28, 135, 175, 272, 275
MhlI GDGCHC 2 cut(s) 204, 244
MluCI AATT 2 cut(s) 163, 370
MlyI GAGTC 3 cut(s) 56, 65, 199
MmeI TCCRAC 1 cut(s) 100
MnlI CCTC 2 cut(s) 61, 319
NdeII GATC 3 cut(s) 133, 265, 334
NlaIII CATG 1 cut(s) 325
NlaIV GGNNCC 1 cut(s) 241
NmeAIII GCCGAG 1 cut(s) 235
PflMI CCANNNNNTGG 1 cut(s) 322
PleI GAGTC 3 cut(s) 56, 65, 198
PpsI GAGTC 3 cut(s) 56, 65, 198
Psp124BI GAGCTC 1 cut(s) 204
PspN4I GGNNCC 1 cut(s) 241
SacI GAGCTC 1 cut(s) 204
Sau3AI GATC 3 cut(s) 133, 265, 334
SchI GAGTC 3 cut(s) 56, 65, 199
SduI GDGCHC 2 cut(s) 204, 244
SetI ASST 5 cut(s) 24, 100, 171, 204, 330
Sse9I AATT 2 cut(s) 163, 370
SsiI CCGC 2 cut(s) 207, 312
SstI GAGCTC 1 cut(s) 204
TaqI TCGA 2 cut(s) 76, 264
TasI AATT 2 cut(s) 163, 370
TspDTI ATGAA 1 cut(s) 275
TspGWI ACGGA 1 cut(s) 98
Van91I CCANNNNNTGG 1 cut(s) 322
XmiI GTMKAC 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.